Wall clock time and date at job start Tue Mar 31 2020 12:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38424 * 122.54029 * 2 1 4 4 C 1.33387 * 114.92317 * 180.26970 * 3 2 1 5 5 S 1.75886 * 109.59281 * 359.76596 * 4 3 2 6 6 C 1.33380 * 122.53971 * 179.82155 * 2 1 3 7 7 C 1.50706 * 125.20446 * 0.02562 * 6 2 1 8 8 H 1.09006 * 115.54488 * 334.13390 * 7 6 2 9 9 C 1.52996 * 117.50082 * 188.46610 * 7 6 2 10 10 C 1.52994 * 117.50161 * 119.80249 * 7 6 2 11 11 H 1.09004 * 117.50009 * 359.97438 * 10 7 6 12 12 C 1.50696 * 117.50292 * 214.98338 * 10 7 6 13 13 O 1.21282 * 119.99915 * 359.97438 * 12 10 7 14 14 N 1.34775 * 120.00641 * 180.02562 * 12 10 7 15 15 C 1.46494 * 120.00333 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.47049 * 179.97438 * 15 14 12 17 17 C 1.53939 * 113.74395 * 273.73963 * 16 15 14 18 18 N 1.47810 * 86.03827 * 222.08420 * 17 16 15 19 19 C 1.36936 * 134.45868 * 204.64329 * 18 17 16 20 20 H 1.08003 * 120.00097 * 179.87129 * 19 18 17 21 21 C 1.38807 * 120.00069 * 359.86541 * 19 18 17 22 22 N 1.31628 * 119.99698 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00444 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46940 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47358 * 120.00165 * 23 21 19 26 26 H 1.48501 * 109.47266 * 240.00464 * 23 21 19 27 27 C 1.47580 * 91.05094 * 24.54940 * 18 17 16 28 28 H 1.08995 * 109.47733 * 270.17616 * 1 2 3 29 29 H 1.09007 * 109.47025 * 30.17898 * 1 2 3 30 30 H 1.09001 * 109.47103 * 150.17156 * 1 2 3 31 31 H 1.08004 * 122.54250 * 0.03274 * 3 2 1 32 32 H 1.07997 * 125.20749 * 179.75076 * 4 3 2 33 33 H 1.09002 * 117.49661 * 359.97438 * 9 7 6 34 34 H 1.08996 * 117.50170 * 144.99429 * 9 7 6 35 35 H 0.97002 * 119.99610 * 359.97438 * 14 12 10 36 36 H 1.09001 * 109.46763 * 299.99777 * 15 14 12 37 37 H 1.09001 * 109.47624 * 59.99546 * 15 14 12 38 38 H 1.08999 * 112.94088 * 45.33429 * 16 15 14 39 39 H 1.09008 * 113.76692 * 336.34724 * 17 16 15 40 40 H 1.08991 * 113.76988 * 107.74592 * 17 16 15 41 41 H 0.96996 * 119.99615 * 179.97438 * 22 21 19 42 42 H 1.09004 * 113.76893 * 221.15131 * 27 18 17 43 43 H 1.09006 * 113.87444 * 89.76802 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9901 -0.0057 5 16 3.9386 -0.7304 -0.0047 6 6 2.2244 -1.1244 0.0035 7 6 1.6536 -2.5192 0.0073 8 1 0.6564 -2.6178 0.4363 9 6 2.6283 -3.6808 0.2108 10 6 2.0107 -3.4319 -1.1675 11 1 2.6582 -3.0234 -1.9435 12 6 0.9571 -4.3988 -1.6428 13 8 -0.1254 -4.4327 -1.0970 14 7 1.2180 -5.2267 -2.6738 15 6 0.1936 -6.1663 -3.1362 16 6 0.7417 -6.9819 -4.3089 17 6 0.5613 -6.2992 -5.6768 18 7 0.1794 -7.6359 -6.1788 19 6 0.2013 -8.2415 -7.4067 20 1 -0.1413 -9.2603 -7.5126 21 6 0.6636 -7.5460 -8.5155 22 7 1.0805 -6.3042 -8.3865 23 14 0.6927 -8.3718 -10.1908 24 1 0.1740 -9.7579 -10.0685 25 1 -0.1601 -7.6062 -11.1350 26 1 2.0870 -8.4078 -10.7008 27 6 -0.2323 -8.0565 -4.8254 28 1 -0.3634 0.0032 1.0276 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3633 -0.8915 -0.5112 31 1 1.7965 2.1464 0.0005 32 1 4.3077 1.7822 -0.0104 33 1 3.6824 -3.4363 0.3415 34 1 2.2724 -4.5437 0.7736 35 1 2.0839 -5.1999 -3.1102 36 1 -0.0778 -6.8377 -2.3215 37 1 -0.6879 -5.6126 -3.4596 38 1 1.7514 -7.3529 -4.1333 39 1 -0.2507 -5.5723 -5.7013 40 1 1.4889 -5.9171 -6.1028 41 1 1.4039 -5.8184 -9.1612 42 1 0.0630 -9.0749 -4.5730 43 1 -1.2777 -7.8479 -4.5975 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031666408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:52 Heat of formation + Delta-G solvation = 49.988177 kcal Electronic energy + Delta-G solvation = -23378.010568 eV Core-core repulsion = 19937.440885 eV Total energy + Delta-G solvation = -3440.569683 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17397 -39.87624 -39.28029 -37.32396 -35.70817 -34.16647 -31.78636 -30.70763 -28.78096 -27.78282 -26.55756 -25.13258 -24.32089 -23.43311 -22.49387 -21.44954 -20.44473 -19.62432 -18.76273 -18.21462 -17.95840 -17.08292 -16.98445 -16.42010 -16.12684 -15.85143 -15.57459 -14.98849 -14.90366 -14.77786 -14.53423 -14.11025 -13.96086 -13.56049 -13.32719 -13.19837 -13.11097 -12.97270 -12.89644 -12.82513 -12.54397 -12.48628 -12.22291 -11.89929 -11.81530 -11.68297 -11.55509 -11.46078 -11.29126 -10.92738 -10.85356 -10.05568 -9.41232 -9.20737 -8.92586 -7.91420 -5.24731 0.01367 0.69958 1.07961 1.45250 1.45608 1.46290 1.56508 1.75577 2.16403 2.46862 2.86456 3.29372 3.38107 3.48584 3.62470 3.73498 3.80771 4.03060 4.08849 4.13883 4.20362 4.35764 4.51679 4.58964 4.60069 4.64337 4.72209 4.77555 4.80907 4.85645 4.86764 4.91990 5.01202 5.09643 5.13638 5.17972 5.25201 5.42985 5.54447 5.55043 5.62367 5.64637 5.93517 6.55872 6.91812 7.22312 7.60123 8.55715 9.25582 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002246 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.264701 B =12464.211138 C =13062.602627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.112 4.112 3 C -0.140 4.140 4 C -0.213 4.213 5 S 0.103 5.897 6 C -0.170 4.170 7 C -0.054 4.054 8 H 0.122 0.878 9 C -0.124 4.124 10 C -0.180 4.180 11 H 0.138 0.862 12 C 0.541 3.459 13 O -0.582 6.582 14 N -0.711 5.711 15 C 0.142 3.858 16 C -0.114 4.114 17 C 0.166 3.834 18 N -0.646 5.646 19 C -0.234 4.234 20 H 0.084 0.916 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.979 3.021 24 H -0.265 1.265 25 H -0.294 1.294 26 H -0.290 1.290 27 C 0.126 3.874 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.157 0.843 32 H 0.187 0.813 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.414 0.586 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.010 0.990 40 H 0.044 0.956 41 H 0.248 0.752 42 H 0.063 0.937 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 12.991 21.642 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.170 4.170 4 C -0.348 4.348 5 S 0.369 5.631 6 C -0.286 4.286 7 C -0.075 4.075 8 H 0.139 0.861 9 C -0.162 4.162 10 C -0.201 4.201 11 H 0.156 0.844 12 C 0.329 3.671 13 O -0.463 6.463 14 N -0.361 5.361 15 C 0.018 3.982 16 C -0.134 4.134 17 C 0.040 3.960 18 N -0.373 5.373 19 C -0.363 4.363 20 H 0.101 0.899 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.807 3.193 24 H -0.190 1.190 25 H -0.222 1.222 26 H -0.217 1.217 27 C 0.001 3.999 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.175 0.825 32 H 0.204 0.796 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.028 0.972 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.487 12.062 21.670 25.906 hybrid contribution -1.171 0.698 -1.652 2.142 sum 6.316 12.760 20.018 24.565 Atomic orbital electron populations 1.20547 0.89332 1.02842 1.02784 1.19124 0.98208 0.91948 1.03111 1.20267 0.93116 0.99676 1.03976 1.25936 1.00175 0.99180 1.09520 1.84071 1.04373 1.01305 1.73378 1.23605 0.96447 0.96734 1.11849 1.20347 1.00469 0.86166 1.00516 0.86065 1.23221 0.99351 0.99332 0.94271 1.22379 1.01654 1.01430 0.94657 0.84415 1.19942 0.87547 0.80379 0.79257 1.90667 1.26410 1.70932 1.58264 1.45894 1.18444 1.37909 1.33871 1.21196 0.90457 0.90879 0.95713 1.23398 1.00504 0.96815 0.92642 1.22263 0.97031 0.87632 0.89037 1.46435 1.74468 1.12432 1.03972 1.19475 1.35466 0.96580 0.84737 0.89859 1.25643 1.02105 0.97011 1.01479 1.70009 1.49610 1.11018 1.29581 0.85002 0.76956 0.77933 0.79384 1.18954 1.22159 1.21655 1.22696 0.96347 0.97483 0.83412 0.90370 0.90428 0.92646 0.82517 0.79555 0.85997 0.86846 0.75004 0.90484 0.93055 0.87674 0.97212 0.93712 0.94304 0.91878 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.72 71.24 0.69 -0.96 16 2 C -0.11 -2.10 5.80 -20.92 -0.12 -2.23 16 3 C -0.14 -2.20 9.98 21.22 0.21 -1.98 16 4 C -0.21 -3.02 11.23 66.72 0.75 -2.27 16 5 S 0.10 1.63 22.16 -56.49 -1.25 0.38 16 6 C -0.17 -3.27 6.13 24.59 0.15 -3.12 16 7 C -0.05 -1.10 4.98 -11.54 -0.06 -1.16 16 8 H 0.12 2.80 7.07 -2.38 -0.02 2.79 16 9 C -0.12 -2.03 9.75 30.62 0.30 -1.73 16 10 C -0.18 -3.67 5.90 -11.52 -0.07 -3.74 16 11 H 0.14 2.50 8.14 -2.38 -0.02 2.48 16 12 C 0.54 14.67 7.61 87.66 0.67 15.33 16 13 O -0.58 -19.95 16.26 -3.04 -0.05 -20.00 16 14 N -0.71 -18.40 5.56 -463.07 -2.57 -20.97 16 15 C 0.14 4.21 5.51 86.38 0.48 4.68 16 16 C -0.11 -3.89 3.93 -10.13 -0.04 -3.93 16 17 C 0.17 7.70 7.08 86.44 0.61 8.32 16 18 N -0.65 -33.12 3.70 -716.15 -2.65 -35.78 16 19 C -0.23 -13.21 10.70 84.03 0.90 -12.31 16 20 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 22 N -0.95 -57.56 11.39 21.65 0.25 -57.31 16 23 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 C 0.13 4.88 8.51 86.49 0.74 5.61 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.13 8.13 -2.38 -0.02 1.11 16 30 H 0.05 1.14 7.25 -2.39 -0.02 1.12 16 31 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 32 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.12 1.58 7.27 -2.39 -0.02 1.56 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.41 9.07 8.47 -92.71 -0.79 8.29 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.05 1.73 7.87 -2.39 -0.02 1.71 16 38 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.01 0.50 7.92 -2.38 -0.02 0.48 16 40 H 0.04 2.31 7.17 -2.39 -0.02 2.29 16 41 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 42 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 Total: -1.00 -71.59 372.62 1.65 -69.94 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.23 Total: 18.86 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.67 Total: -3.01 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -4.98 Total: -114.06 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.05 Total: -20.00 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.25 Total: 0.38 kcal Total: -71.59 1.65 -69.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031666408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.928 kcal (2) G-P(sol) polarization free energy of solvation -71.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds