Wall clock time and date at job start Tue Mar 31 2020 12:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46911 * 2 1 4 4 C 1.50705 * 109.47545 * 119.99867 * 2 1 3 5 5 C 1.37475 * 123.34909 * 305.42208 * 4 2 1 6 6 C 1.33818 * 115.09759 * 180.26972 * 5 4 2 7 7 S 1.70615 * 110.95368 * 359.74809 * 6 5 4 8 8 C 1.36643 * 123.34828 * 125.21837 * 4 2 1 9 9 C 1.46579 * 125.46427 * 0.02562 * 8 4 2 10 10 O 1.21700 * 119.99883 * 354.18346 * 9 8 4 11 11 N 1.34772 * 120.00540 * 174.18170 * 9 8 4 12 12 C 1.47876 * 126.94267 * 0.02697 * 11 9 8 13 13 C 1.56017 * 105.19438 * 181.95011 * 12 11 9 14 14 H 1.08999 * 116.24903 * 159.73114 * 13 12 11 15 15 C 1.57357 * 99.48809 * 32.80906 * 13 12 11 16 16 C 1.49289 * 126.94817 * 180.02562 * 11 9 8 17 17 H 1.08989 * 116.15134 * 16.70700 * 16 11 9 18 18 C 1.56015 * 104.09120 * 247.55830 * 16 11 9 19 19 N 1.47870 * 105.10954 * 288.76745 * 18 16 11 20 20 C 1.36932 * 126.94654 * 182.02492 * 19 18 16 21 21 H 1.08002 * 120.00128 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00207 * 359.97438 * 20 19 18 23 23 N 1.31623 * 119.99980 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00121 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47095 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47096 * 119.99934 * 24 22 20 27 27 H 1.48501 * 109.46769 * 239.99958 * 24 22 20 28 28 H 1.09003 * 109.47469 * 299.99467 * 1 2 3 29 29 H 1.08996 * 109.47303 * 60.00187 * 1 2 3 30 30 H 1.09007 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47469 * 240.00533 * 2 1 3 32 32 H 1.09004 * 109.47202 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47568 * 300.00392 * 3 2 1 34 34 H 1.09002 * 109.47318 * 60.00275 * 3 2 1 35 35 H 1.07996 * 122.45228 * 0.03996 * 5 4 2 36 36 H 1.08002 * 124.52329 * 179.77144 * 6 5 4 37 37 H 1.08998 * 110.31364 * 300.91130 * 12 11 9 38 38 H 1.09006 * 110.31641 * 62.99185 * 12 11 9 39 39 H 1.09002 * 112.35290 * 191.71608 * 15 13 12 40 40 H 1.09000 * 112.36650 * 64.29114 * 15 13 12 41 41 H 1.08996 * 110.31803 * 47.67407 * 18 16 11 42 42 H 1.09004 * 110.31355 * 169.76119 * 18 16 11 43 43 H 0.96991 * 120.00042 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6568 -0.3671 2.5076 6 6 2.2077 -1.1047 3.4788 7 16 3.2413 -2.2961 2.8284 8 6 2.9034 -1.7623 1.1875 9 6 3.4703 -2.3479 -0.0309 10 8 3.0916 -1.9661 -1.1226 11 7 4.4109 -3.3089 0.0578 12 6 4.9794 -3.8846 1.2956 13 6 6.0523 -4.9101 0.8145 14 1 6.8130 -5.1896 1.5433 15 6 6.5387 -4.1823 -0.4931 16 6 5.0896 -4.0075 -1.0736 17 1 5.0110 -3.5293 -2.0498 18 6 4.5695 -5.4755 -0.9804 19 7 5.2200 -6.0393 0.2219 20 6 5.1043 -7.3183 0.6970 21 1 5.6334 -7.6120 1.5916 22 6 4.3071 -8.2375 0.0289 23 7 3.6619 -7.8795 -1.0611 24 14 4.1487 -9.9821 0.6775 25 1 4.9672 -10.1290 1.9078 26 1 2.7255 -10.2658 0.9923 27 1 4.6280 -10.9385 -0.3525 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 0.9705 0.4412 2.7124 36 1 2.0224 -0.9647 4.5336 37 1 5.4450 -3.1039 1.8970 38 1 4.2027 -4.3906 1.8692 39 1 7.1611 -4.8235 -1.1173 40 1 7.0189 -3.2269 -0.2818 41 1 3.4858 -5.4864 -0.8644 42 1 4.8601 -6.0370 -1.8683 43 1 3.1051 -8.5218 -1.5282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032797874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:42 Heat of formation + Delta-G solvation = 53.213703 kcal Electronic energy + Delta-G solvation = -25477.502413 eV Core-core repulsion = 22037.072599 eV Total energy + Delta-G solvation = -3440.429814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.13414 -38.96163 -37.19725 -34.01693 -33.60298 -31.69393 -29.77959 -28.78334 -28.51342 -27.06561 -25.34935 -24.78180 -23.28971 -21.84036 -21.17327 -20.00534 -19.18444 -17.98420 -17.61572 -16.67285 -15.88102 -15.77772 -15.39067 -14.87245 -14.34000 -14.09500 -13.84934 -13.61386 -13.48537 -13.31081 -13.03250 -12.52624 -12.43457 -12.27143 -12.05790 -11.95198 -11.71147 -11.46128 -11.32929 -11.05920 -11.02411 -10.91739 -10.84765 -10.72809 -10.66155 -10.50006 -10.20039 -10.08053 -9.62806 -9.26884 -8.73693 -8.71139 -8.38251 -7.99633 -6.95591 -5.77879 -3.12165 0.68583 1.65681 2.07349 2.50246 3.30279 3.36486 3.41109 3.44567 3.53330 4.37337 4.76318 4.84775 5.01045 5.06415 5.11384 5.19454 5.29164 5.31217 5.44228 5.50946 5.56470 5.66309 5.71184 5.72090 5.73394 5.81551 5.86271 6.02723 6.07436 6.13009 6.16436 6.24794 6.33243 6.34480 6.40999 6.45209 6.52509 6.63540 6.77050 7.37502 7.46072 7.70421 8.00120 8.05876 8.51951 9.08087 9.67214 10.37663 11.34286 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.004010 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.581711 B = 6980.648855 C = 7195.360170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.022 4.022 5 C -0.144 4.144 6 C -0.257 4.257 7 S 0.220 5.780 8 C -0.257 4.257 9 C 0.603 3.397 10 O -0.541 6.541 11 N -0.601 5.601 12 C 0.074 3.926 13 C 0.140 3.860 14 H 0.112 0.888 15 C -0.149 4.149 16 C 0.102 3.898 17 H 0.115 0.885 18 C 0.175 3.825 19 N -0.600 5.600 20 C -0.229 4.229 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 15.753 6.865 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.037 4.037 5 C -0.176 4.176 6 C -0.395 4.395 7 S 0.491 5.509 8 C -0.377 4.377 9 C 0.392 3.608 10 O -0.422 6.422 11 N -0.334 5.334 12 C -0.052 4.052 13 C 0.032 3.968 14 H 0.129 0.871 15 C -0.188 4.188 16 C 0.000 4.000 17 H 0.133 0.867 18 C 0.050 3.950 19 N -0.325 5.325 20 C -0.357 4.357 21 H 0.099 0.901 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.154 0.846 36 H 0.180 0.820 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.566 14.587 6.935 16.162 hybrid contribution -1.313 0.205 0.087 1.332 sum -0.747 14.792 7.022 16.391 Atomic orbital electron populations 1.21776 0.94610 1.01889 1.01244 1.20386 0.95564 0.95753 0.97046 1.21748 1.01062 0.95194 1.01258 1.19383 0.94556 0.93981 0.95768 1.19769 1.03816 1.02840 0.91144 1.25541 1.05904 1.03652 1.04354 1.83588 1.40914 1.30310 0.96121 1.24479 1.10205 1.05798 0.97259 1.16494 0.78603 0.78560 0.87136 1.90646 1.61261 1.62440 1.27839 1.49076 1.38328 1.36327 1.09640 1.23370 0.98763 0.96622 0.86448 1.23766 0.91621 0.87282 0.94148 0.87075 1.24139 0.95684 0.99922 0.99073 1.24390 0.91265 0.94411 0.89983 0.86691 1.21916 0.96586 0.85922 0.90538 1.45936 1.51959 1.07018 1.27633 1.19096 1.24367 0.84680 1.07582 0.90075 1.24813 0.99549 0.98364 0.97564 1.69921 1.33829 1.33852 1.19017 0.86046 0.77424 0.84365 0.77893 1.20448 1.21792 1.21737 0.93133 0.92405 0.92614 0.85977 0.92848 0.92403 0.93161 0.84593 0.82048 0.92233 0.90373 0.89481 0.91393 0.93367 0.92523 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.99 37.15 0.33 -1.31 16 2 C -0.07 -0.94 3.07 -91.77 -0.28 -1.22 16 3 C -0.13 -1.55 9.09 37.16 0.34 -1.21 16 4 C -0.02 -0.32 4.72 -105.47 -0.50 -0.81 16 5 C -0.14 -1.78 9.18 -41.41 -0.38 -2.16 16 6 C -0.26 -3.00 10.92 29.18 0.32 -2.68 16 7 S 0.22 2.98 18.72 -107.50 -2.01 0.97 16 8 C -0.26 -4.24 6.38 -36.80 -0.23 -4.48 16 9 C 0.60 11.61 7.85 -12.90 -0.10 11.51 16 10 O -0.54 -11.45 14.34 5.19 0.07 -11.38 16 11 N -0.60 -11.31 2.94 -158.34 -0.47 -11.77 16 12 C 0.07 1.27 4.55 -1.67 -0.01 1.26 16 13 C 0.14 2.52 5.70 -60.66 -0.35 2.17 16 14 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 15 C -0.15 -2.44 6.84 -22.14 -0.15 -2.60 16 16 C 0.10 1.95 5.18 -62.55 -0.32 1.63 16 17 H 0.12 2.13 8.06 -51.94 -0.42 1.71 16 18 C 0.18 4.18 4.79 -1.68 -0.01 4.17 16 19 N -0.60 -14.21 3.09 -153.84 -0.48 -14.68 16 20 C -0.23 -6.02 10.42 -15.06 -0.16 -6.18 16 21 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 23 N -0.92 -26.67 10.56 55.49 0.59 -26.08 16 24 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 H 0.05 0.52 7.49 -51.93 -0.39 0.13 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.12 2.07 4.95 -51.93 -0.26 1.81 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.50 8.00 -51.93 -0.42 0.09 16 35 H 0.14 1.38 7.66 -52.49 -0.40 0.98 16 36 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.06 0.85 7.13 -51.93 -0.37 0.48 16 38 H 0.08 1.47 7.01 -51.93 -0.36 1.10 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 1.34 7.68 -51.93 -0.40 0.94 16 42 H 0.06 1.48 7.46 -51.93 -0.39 1.09 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -30.83 350.32 -9.96 -40.80 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.33 Total: 2.50 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.60 Total: -2.17 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.36 Total: -52.54 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.01 Total: 0.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.83 -9.96 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032797874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.009 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds