Wall clock time and date at job start Tue Mar 31 2020 12:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46911 * 2 1 4 4 C 1.50705 * 109.47545 * 119.99867 * 2 1 3 5 5 C 1.37475 * 123.34909 * 305.42208 * 4 2 1 6 6 C 1.33818 * 115.09759 * 180.26972 * 5 4 2 7 7 S 1.70615 * 110.95368 * 359.74809 * 6 5 4 8 8 C 1.36643 * 123.34828 * 125.21837 * 4 2 1 9 9 C 1.46579 * 125.46427 * 0.02562 * 8 4 2 10 10 O 1.21700 * 119.99883 * 354.18346 * 9 8 4 11 11 N 1.34772 * 120.00540 * 174.18170 * 9 8 4 12 12 C 1.47876 * 126.94267 * 0.02697 * 11 9 8 13 13 C 1.56017 * 105.19438 * 181.95011 * 12 11 9 14 14 H 1.08999 * 116.24903 * 159.73114 * 13 12 11 15 15 C 1.57357 * 99.48809 * 32.80906 * 13 12 11 16 16 C 1.49289 * 126.94817 * 180.02562 * 11 9 8 17 17 H 1.08989 * 116.15134 * 16.70700 * 16 11 9 18 18 C 1.56015 * 104.09120 * 247.55830 * 16 11 9 19 19 N 1.47870 * 105.10954 * 288.76745 * 18 16 11 20 20 C 1.36932 * 126.94654 * 182.02492 * 19 18 16 21 21 H 1.08002 * 120.00128 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00207 * 359.97438 * 20 19 18 23 23 N 1.31623 * 119.99980 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00121 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47095 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47096 * 119.99934 * 24 22 20 27 27 H 1.48501 * 109.46769 * 239.99958 * 24 22 20 28 28 H 1.09003 * 109.47469 * 299.99467 * 1 2 3 29 29 H 1.08996 * 109.47303 * 60.00187 * 1 2 3 30 30 H 1.09007 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47469 * 240.00533 * 2 1 3 32 32 H 1.09004 * 109.47202 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47568 * 300.00392 * 3 2 1 34 34 H 1.09002 * 109.47318 * 60.00275 * 3 2 1 35 35 H 1.07996 * 122.45228 * 0.03996 * 5 4 2 36 36 H 1.08002 * 124.52329 * 179.77144 * 6 5 4 37 37 H 1.08998 * 110.31364 * 300.91130 * 12 11 9 38 38 H 1.09006 * 110.31641 * 62.99185 * 12 11 9 39 39 H 1.09002 * 112.35290 * 191.71608 * 15 13 12 40 40 H 1.09000 * 112.36650 * 64.29114 * 15 13 12 41 41 H 1.08996 * 110.31803 * 47.67407 * 18 16 11 42 42 H 1.09004 * 110.31355 * 169.76119 * 18 16 11 43 43 H 0.96991 * 120.00042 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6568 -0.3671 2.5076 6 6 2.2077 -1.1047 3.4788 7 16 3.2413 -2.2961 2.8284 8 6 2.9034 -1.7623 1.1875 9 6 3.4703 -2.3479 -0.0309 10 8 3.0916 -1.9661 -1.1226 11 7 4.4109 -3.3089 0.0578 12 6 4.9794 -3.8846 1.2956 13 6 6.0523 -4.9101 0.8145 14 1 6.8130 -5.1896 1.5433 15 6 6.5387 -4.1823 -0.4931 16 6 5.0896 -4.0075 -1.0736 17 1 5.0110 -3.5293 -2.0498 18 6 4.5695 -5.4755 -0.9804 19 7 5.2200 -6.0393 0.2219 20 6 5.1043 -7.3183 0.6970 21 1 5.6334 -7.6120 1.5916 22 6 4.3071 -8.2375 0.0289 23 7 3.6619 -7.8795 -1.0611 24 14 4.1487 -9.9821 0.6775 25 1 4.9672 -10.1290 1.9078 26 1 2.7255 -10.2658 0.9923 27 1 4.6280 -10.9385 -0.3525 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 0.9705 0.4412 2.7124 36 1 2.0224 -0.9647 4.5336 37 1 5.4450 -3.1039 1.8970 38 1 4.2027 -4.3906 1.8692 39 1 7.1611 -4.8235 -1.1173 40 1 7.0189 -3.2269 -0.2818 41 1 3.4858 -5.4864 -0.8644 42 1 4.8601 -6.0370 -1.8683 43 1 3.1051 -8.5218 -1.5282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032797874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:41 Heat of formation + Delta-G solvation = 35.717805 kcal Electronic energy + Delta-G solvation = -25478.261092 eV Core-core repulsion = 22037.072599 eV Total energy + Delta-G solvation = -3441.188493 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61165 -40.20185 -38.58243 -35.48217 -34.96268 -33.39844 -31.26464 -30.37250 -29.96872 -27.98830 -27.04429 -26.11107 -24.83896 -23.02488 -22.43034 -21.54010 -20.71914 -19.49624 -18.76606 -18.37206 -17.33273 -17.10079 -16.76306 -16.39828 -15.92850 -15.51101 -15.09742 -14.94032 -14.83237 -14.42253 -14.33016 -13.89362 -13.62214 -13.58598 -13.36802 -13.31978 -13.14775 -12.93299 -12.82513 -12.75925 -12.56165 -12.21898 -12.17827 -12.04895 -12.03021 -11.93561 -11.83997 -11.52262 -11.45629 -10.80314 -10.58585 -9.89855 -9.57808 -9.29749 -8.92516 -7.83817 -5.19384 -0.42139 0.57227 1.05106 1.43169 1.47094 1.47597 1.57864 1.88704 2.18293 2.47130 3.28629 3.34417 3.53704 3.78533 3.81189 3.88264 3.98651 4.02816 4.15699 4.28564 4.32195 4.44562 4.47092 4.57695 4.73650 4.74785 4.80454 4.80930 4.85576 4.96615 4.98278 5.05710 5.09304 5.16687 5.21673 5.24040 5.38703 5.41777 5.42952 5.52790 5.65040 5.68332 6.06123 6.56078 7.02101 7.07215 7.68318 8.40225 9.27629 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.004010 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.581711 B = 6980.648855 C = 7195.360170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.128 4.128 4 C -0.014 4.014 5 C -0.154 4.154 6 C -0.231 4.231 7 S 0.226 5.774 8 C -0.307 4.307 9 C 0.594 3.406 10 O -0.575 6.575 11 N -0.608 5.608 12 C 0.082 3.918 13 C 0.137 3.863 14 H 0.145 0.855 15 C -0.126 4.126 16 C 0.103 3.897 17 H 0.115 0.885 18 C 0.190 3.810 19 N -0.620 5.620 20 C -0.225 4.225 21 H 0.098 0.902 22 C -0.073 4.073 23 N -0.959 5.959 24 Si 0.976 3.024 25 H -0.256 1.256 26 H -0.302 1.302 27 H -0.297 1.297 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.166 0.834 36 H 0.199 0.801 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.105 0.895 41 H -0.007 1.007 42 H 0.020 0.980 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 17.964 10.289 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.095 4.095 3 C -0.185 4.185 4 C -0.031 4.031 5 C -0.184 4.184 6 C -0.369 4.369 7 S 0.497 5.503 8 C -0.427 4.427 9 C 0.386 3.614 10 O -0.459 6.459 11 N -0.339 5.339 12 C -0.043 4.043 13 C 0.032 3.968 14 H 0.163 0.837 15 C -0.164 4.164 16 C 0.000 4.000 17 H 0.133 0.867 18 C 0.064 3.936 19 N -0.346 5.346 20 C -0.354 4.354 21 H 0.116 0.884 22 C -0.265 4.265 23 N -0.609 5.609 24 Si 0.805 3.195 25 H -0.180 1.180 26 H -0.229 1.229 27 H -0.224 1.224 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.184 0.816 36 H 0.216 0.784 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.012 0.988 42 H 0.038 0.962 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.535 16.821 10.410 19.841 hybrid contribution -1.650 -0.385 -0.920 1.928 sum -0.115 16.436 9.491 18.979 Atomic orbital electron populations 1.21746 0.93150 1.01086 1.03045 1.20379 0.96789 0.96853 0.95437 1.21692 1.00277 0.93638 1.02899 1.19732 0.93225 0.92948 0.97166 1.19985 1.04599 1.03961 0.89869 1.25963 1.03555 1.01346 1.06002 1.83418 1.41753 1.30998 0.94178 1.24350 1.12811 1.07833 0.97669 1.17008 0.78119 0.78362 0.87952 1.90628 1.62139 1.63623 1.29483 1.49144 1.38620 1.36333 1.09852 1.23278 0.97909 0.97206 0.85910 1.24211 0.91856 0.85330 0.95389 0.83707 1.24058 0.93543 1.01410 0.97435 1.24221 0.93411 0.91319 0.91010 0.86677 1.21469 0.93596 0.88840 0.89699 1.46203 1.52797 1.07732 1.27825 1.19601 1.22791 0.85680 1.07291 0.88433 1.25653 1.00316 1.02294 0.98230 1.70170 1.35354 1.34549 1.20844 0.85031 0.76784 0.79825 0.77851 1.18007 1.22932 1.22436 0.90659 0.91276 0.94687 0.89729 0.94016 0.91351 0.90900 0.81641 0.78384 0.88462 0.92216 0.89403 0.87713 0.98831 0.96196 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.99 71.98 0.65 -2.37 16 2 C -0.07 -2.02 3.07 -11.54 -0.04 -2.06 16 3 C -0.13 -2.70 9.09 71.98 0.65 -2.04 16 4 C -0.01 -0.40 4.72 -20.42 -0.10 -0.50 16 5 C -0.15 -3.26 9.18 21.08 0.19 -3.06 16 6 C -0.23 -4.46 10.92 66.81 0.73 -3.73 16 7 S 0.23 5.63 18.72 -56.49 -1.06 4.58 16 8 C -0.31 -10.03 6.38 24.07 0.15 -9.88 16 9 C 0.59 23.65 7.85 86.42 0.68 24.33 16 10 O -0.58 -25.88 14.34 -4.35 -0.06 -25.94 16 11 N -0.61 -23.17 2.94 -773.07 -2.27 -25.44 16 12 C 0.08 2.70 4.55 87.16 0.40 3.09 16 13 C 0.14 4.69 5.70 46.42 0.26 4.95 16 14 H 0.15 3.99 8.14 -2.39 -0.02 3.97 16 15 C -0.13 -3.90 6.84 33.57 0.23 -3.67 16 16 C 0.10 4.08 5.18 46.93 0.24 4.33 16 17 H 0.12 4.49 8.06 -2.39 -0.02 4.48 16 18 C 0.19 9.63 4.79 87.16 0.42 10.05 16 19 N -0.62 -29.78 3.09 -640.63 -1.98 -31.76 16 20 C -0.22 -11.87 10.42 84.03 0.88 -11.00 16 21 H 0.10 4.72 7.83 -2.91 -0.02 4.70 16 22 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 23 N -0.96 -59.05 10.56 21.65 0.23 -58.83 16 24 Si 0.98 45.35 29.55 68.60 2.03 47.37 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 28 H 0.07 1.32 7.49 -2.39 -0.02 1.30 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.08 3.01 4.95 -2.39 -0.01 3.00 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.21 8.00 -2.39 -0.02 1.19 16 35 H 0.17 2.52 7.66 -2.91 -0.02 2.50 16 36 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.10 2.48 7.13 -2.39 -0.02 2.47 16 38 H 0.06 2.21 7.01 -2.38 -0.02 2.19 16 39 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 41 H -0.01 -0.40 7.68 -2.39 -0.02 -0.41 16 42 H 0.02 1.13 7.46 -2.39 -0.02 1.11 16 43 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -73.38 350.32 3.71 -69.67 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 1.01 Total: 15.55 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.82 Total: 4.80 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -4.02 Total: -116.03 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.06 Total: -25.94 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 5.63 SS G_CDS: -1.06 Total: 4.58 kcal Total: -73.38 3.71 -69.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032797874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.387 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds