Wall clock time and date at job start Tue Mar 31 2020 12:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37471 * 123.35197 * 2 1 4 4 C 1.33820 * 115.09866 * 180.02562 * 3 2 1 5 5 S 1.70622 * 110.95273 * 0.02562 * 4 3 2 6 6 C 1.36650 * 123.34611 * 180.02562 * 2 1 3 7 7 C 1.46584 * 125.46044 * 359.96219 * 6 2 1 8 8 O 1.21695 * 120.00144 * 42.66677 * 7 6 2 9 9 N 1.34774 * 119.99470 * 222.67013 * 7 6 2 10 10 C 1.46891 * 120.45971 * 185.43703 * 9 7 6 11 11 C 1.52861 * 109.01342 * 235.48579 * 10 9 7 12 12 C 1.52669 * 109.17941 * 307.81999 * 11 10 9 13 13 C 1.53484 * 113.62588 * 188.99850 * 12 11 10 14 14 N 1.47668 * 85.98462 * 137.70472 * 13 12 11 15 15 C 1.36937 * 134.45291 * 155.71747 * 14 13 12 16 16 H 1.07994 * 120.00459 * 179.97438 * 15 14 13 17 17 C 1.38817 * 120.00219 * 359.94992 * 15 14 13 18 18 N 1.31625 * 119.99762 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00151 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47029 * 89.99894 * 19 17 15 21 21 H 1.48502 * 109.47042 * 209.99803 * 19 17 15 22 22 H 1.48497 * 109.47092 * 329.99525 * 19 17 15 23 23 C 1.47660 * 91.08919 * 335.68089 * 14 13 12 24 24 C 1.52677 * 113.18443 * 57.46221 * 12 11 10 25 25 C 1.46877 * 120.47158 * 5.71357 * 9 7 6 26 26 H 1.09004 * 109.47078 * 89.97595 * 1 2 3 27 27 H 1.08996 * 109.47679 * 209.97676 * 1 2 3 28 28 H 1.08997 * 109.46781 * 329.97637 * 1 2 3 29 29 H 1.08000 * 122.44879 * 359.75217 * 3 2 1 30 30 H 1.07999 * 124.52207 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.58927 * 355.30815 * 10 9 7 32 32 H 1.08996 * 109.59065 * 115.75122 * 10 9 7 33 33 H 1.09001 * 109.60742 * 187.84075 * 11 10 9 34 34 H 1.09004 * 109.45060 * 67.70074 * 11 10 9 35 35 H 1.08996 * 113.78481 * 251.97285 * 13 12 11 36 36 H 1.08998 * 113.78807 * 23.43592 * 13 12 11 37 37 H 0.96995 * 119.99962 * 179.97438 * 18 17 15 38 38 H 1.09004 * 113.78995 * 270.04737 * 23 14 13 39 39 H 1.09000 * 113.78726 * 138.58207 * 23 14 13 40 40 H 1.09000 * 109.52834 * 182.52207 * 24 12 11 41 41 H 1.08995 * 109.59151 * 62.33401 * 24 12 11 42 42 H 1.09002 * 109.59098 * 244.26214 * 25 9 7 43 43 H 1.09004 * 109.58554 * 4.68674 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5872 0.9562 -0.0005 5 16 3.9623 -0.7083 -0.0018 6 6 2.2582 -1.1415 -0.0005 7 6 1.7283 -2.5082 -0.0003 8 8 0.7854 -2.7954 -0.7141 9 7 2.2853 -3.4468 0.7904 10 6 1.8420 -4.8450 0.7123 11 6 1.4070 -5.3079 2.1027 12 6 2.5223 -5.0108 3.1020 13 6 2.2877 -5.6285 4.4873 14 7 3.7203 -5.9853 4.4563 15 6 4.6660 -6.2401 5.4132 16 1 5.6762 -6.4869 5.1219 17 6 4.3265 -6.1807 6.7579 18 7 3.0955 -5.8790 7.1131 19 14 5.6169 -6.5276 8.0633 20 1 6.2979 -5.2614 8.4349 21 1 4.9631 -7.1087 9.2635 22 1 6.6152 -7.4886 7.5295 23 6 3.7240 -5.9582 2.9799 24 6 2.9107 -3.5349 3.1481 25 6 3.3399 -3.0848 1.7465 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8901 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 1.8201 2.1334 -0.0039 30 1 4.3206 1.7489 -0.0002 31 1 1.0013 -4.9238 0.0231 32 1 2.6637 -5.4700 0.3629 33 1 1.2086 -6.3795 2.0860 34 1 0.5029 -4.7745 2.3965 35 1 2.0327 -4.8993 5.2563 36 1 1.6197 -6.4897 4.4772 37 1 2.8581 -5.8379 8.0527 38 1 3.4829 -6.9176 2.5219 39 1 4.6105 -5.4911 2.5510 40 1 3.7380 -3.3975 3.8443 41 1 2.0565 -2.9423 3.4755 42 1 4.2695 -3.5831 1.4713 43 1 3.4856 -2.0046 1.7383 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035639754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:58 Heat of formation + Delta-G solvation = 55.039764 kcal Electronic energy + Delta-G solvation = -25175.307182 eV Core-core repulsion = 21734.956552 eV Total energy + Delta-G solvation = -3440.350630 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40692 -38.99122 -37.81107 -35.69671 -32.57527 -31.56868 -30.81668 -30.36580 -28.32446 -26.71207 -25.03982 -24.07319 -23.29676 -23.17588 -21.55168 -20.41513 -18.56544 -18.40311 -17.08446 -16.70957 -16.16239 -15.87338 -15.19560 -15.01787 -14.83434 -14.59806 -13.94905 -13.77274 -13.72418 -13.47594 -13.36834 -12.88158 -12.81057 -12.33960 -12.23337 -12.15896 -12.08043 -11.84950 -11.66428 -11.13422 -11.06232 -10.99663 -10.86381 -10.84845 -10.39962 -10.24162 -9.90181 -9.70224 -9.53411 -9.33709 -8.92576 -8.78457 -8.48388 -8.42873 -6.84580 -5.75131 -3.06853 0.46124 1.27924 1.74308 2.29100 2.88366 3.18908 3.38734 3.43916 3.45775 4.46578 4.50006 4.69105 4.98989 5.05640 5.07319 5.11153 5.17171 5.32469 5.34857 5.40016 5.49712 5.57165 5.62023 5.66353 5.76601 5.80961 5.84175 5.89070 5.98922 6.14594 6.20267 6.24841 6.28769 6.35080 6.50670 6.60447 6.64254 6.81529 6.83775 7.25645 7.38821 7.43046 7.59920 8.00369 8.13611 9.06613 9.72828 10.63464 11.41778 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.003442 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.091786 B = 8132.685244 C = 8781.774042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.036 4.036 3 C -0.144 4.144 4 C -0.243 4.243 5 S 0.215 5.785 6 C -0.264 4.264 7 C 0.591 3.409 8 O -0.534 6.534 9 N -0.598 5.598 10 C 0.116 3.884 11 C -0.117 4.117 12 C -0.109 4.109 13 C 0.174 3.826 14 N -0.609 5.609 15 C -0.222 4.222 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.126 3.874 24 C -0.094 4.094 25 C 0.097 3.903 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.142 0.858 30 H 0.167 0.833 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 12.704 -15.352 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.051 4.051 3 C -0.176 4.176 4 C -0.380 4.380 5 S 0.484 5.516 6 C -0.385 4.385 7 C 0.378 3.622 8 O -0.413 6.413 9 N -0.331 5.331 10 C -0.005 4.005 11 C -0.156 4.156 12 C -0.111 4.111 13 C 0.048 3.952 14 N -0.335 5.335 15 C -0.349 4.349 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.000 4.000 24 C -0.132 4.132 25 C -0.026 4.026 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.160 0.840 30 H 0.185 0.815 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.452 11.677 -15.392 19.325 hybrid contribution -0.464 0.624 0.942 1.221 sum -0.916 12.301 -14.450 18.999 Atomic orbital electron populations 1.20522 0.88951 1.02865 1.02962 1.19416 0.97592 0.90457 0.97593 1.19859 0.92558 0.99485 1.05657 1.25341 1.00710 1.02494 1.09482 1.83284 1.03604 0.97312 1.67446 1.24420 0.97596 0.97501 1.18935 1.16977 0.82348 0.82865 0.80034 1.90791 1.27550 1.80617 1.42372 1.47999 1.38697 1.08635 1.37723 1.21563 1.00443 0.79971 0.98564 1.21740 0.98787 1.01324 0.93787 1.22386 0.95688 0.94936 0.98059 1.22227 0.86097 0.95726 0.91125 1.45968 1.06536 1.81754 0.99224 1.19009 0.89950 1.40533 0.85436 0.90434 1.24752 0.96522 1.02355 0.96750 1.69819 1.16909 1.54476 1.15603 0.86172 0.80454 0.77873 0.81571 1.21587 1.21715 1.20775 1.22590 0.94911 0.95132 0.87324 1.21456 1.02259 0.94770 0.94703 1.22157 0.89984 1.00799 0.89652 0.90403 0.90976 0.91390 0.83986 0.81526 0.89297 0.91290 0.90608 0.91804 0.90996 0.95717 0.93726 0.95096 0.94200 0.89257 0.92034 0.90811 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.51 36.01 0.34 -0.66 16 2 C -0.04 -0.42 5.90 -105.47 -0.62 -1.04 16 3 C -0.14 -1.38 9.97 -41.41 -0.41 -1.79 16 4 C -0.24 -2.16 10.92 29.18 0.32 -1.84 16 5 S 0.21 2.19 20.18 -107.50 -2.17 0.02 16 6 C -0.26 -3.41 5.33 -36.79 -0.20 -3.61 16 7 C 0.59 8.86 7.02 -12.90 -0.09 8.77 16 8 O -0.53 -9.29 15.48 5.19 0.08 -9.21 16 9 N -0.60 -8.48 2.95 -174.53 -0.51 -9.00 16 10 C 0.12 1.61 6.29 -3.90 -0.02 1.58 16 11 C -0.12 -1.76 5.24 -26.97 -0.14 -1.90 16 12 C -0.11 -1.94 0.77 -154.42 -0.12 -2.06 16 13 C 0.17 3.97 6.64 -3.16 -0.02 3.95 16 14 N -0.61 -15.09 3.53 -179.79 -0.64 -15.73 16 15 C -0.22 -6.09 10.70 -15.06 -0.16 -6.25 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 18 N -0.92 -26.98 11.39 55.49 0.63 -26.35 16 19 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.13 2.47 7.72 -3.15 -0.02 2.44 16 24 C -0.09 -1.53 5.22 -26.72 -0.14 -1.67 16 25 C 0.10 1.32 5.57 -3.66 -0.02 1.30 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.89 7.31 -51.93 -0.38 0.51 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.09 1.24 6.97 -51.93 -0.36 0.88 16 32 H 0.07 0.88 8.07 -51.93 -0.42 0.47 16 33 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 36 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 39 H 0.04 0.74 7.41 -51.93 -0.38 0.35 16 40 H 0.09 1.66 8.01 -51.93 -0.42 1.24 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 43 H 0.08 1.03 4.49 -38.25 -0.17 0.86 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -31.86 352.69 -9.96 -41.82 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.24 Total: -0.66 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.41 Total: -3.09 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.52 Total: -51.08 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.17 Total: 0.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.86 -9.96 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035639754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.859 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds