Wall clock time and date at job start Tue Mar 31 2020 12:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37471 * 123.35197 * 2 1 4 4 C 1.33820 * 115.09866 * 180.02562 * 3 2 1 5 5 S 1.70622 * 110.95273 * 0.02562 * 4 3 2 6 6 C 1.36650 * 123.34611 * 180.02562 * 2 1 3 7 7 C 1.46584 * 125.46044 * 359.96219 * 6 2 1 8 8 O 1.21695 * 120.00144 * 42.66677 * 7 6 2 9 9 N 1.34774 * 119.99470 * 222.67013 * 7 6 2 10 10 C 1.46891 * 120.45971 * 185.43703 * 9 7 6 11 11 C 1.52861 * 109.01342 * 235.48579 * 10 9 7 12 12 C 1.52669 * 109.17941 * 307.81999 * 11 10 9 13 13 C 1.53484 * 113.62588 * 188.99850 * 12 11 10 14 14 N 1.47668 * 85.98462 * 137.70472 * 13 12 11 15 15 C 1.36937 * 134.45291 * 155.71747 * 14 13 12 16 16 H 1.07994 * 120.00459 * 179.97438 * 15 14 13 17 17 C 1.38817 * 120.00219 * 359.94992 * 15 14 13 18 18 N 1.31625 * 119.99762 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00151 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47029 * 89.99894 * 19 17 15 21 21 H 1.48502 * 109.47042 * 209.99803 * 19 17 15 22 22 H 1.48497 * 109.47092 * 329.99525 * 19 17 15 23 23 C 1.47660 * 91.08919 * 335.68089 * 14 13 12 24 24 C 1.52677 * 113.18443 * 57.46221 * 12 11 10 25 25 C 1.46877 * 120.47158 * 5.71357 * 9 7 6 26 26 H 1.09004 * 109.47078 * 89.97595 * 1 2 3 27 27 H 1.08996 * 109.47679 * 209.97676 * 1 2 3 28 28 H 1.08997 * 109.46781 * 329.97637 * 1 2 3 29 29 H 1.08000 * 122.44879 * 359.75217 * 3 2 1 30 30 H 1.07999 * 124.52207 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.58927 * 355.30815 * 10 9 7 32 32 H 1.08996 * 109.59065 * 115.75122 * 10 9 7 33 33 H 1.09001 * 109.60742 * 187.84075 * 11 10 9 34 34 H 1.09004 * 109.45060 * 67.70074 * 11 10 9 35 35 H 1.08996 * 113.78481 * 251.97285 * 13 12 11 36 36 H 1.08998 * 113.78807 * 23.43592 * 13 12 11 37 37 H 0.96995 * 119.99962 * 179.97438 * 18 17 15 38 38 H 1.09004 * 113.78995 * 270.04737 * 23 14 13 39 39 H 1.09000 * 113.78726 * 138.58207 * 23 14 13 40 40 H 1.09000 * 109.52834 * 182.52207 * 24 12 11 41 41 H 1.08995 * 109.59151 * 62.33401 * 24 12 11 42 42 H 1.09002 * 109.59098 * 244.26214 * 25 9 7 43 43 H 1.09004 * 109.58554 * 4.68674 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5872 0.9562 -0.0005 5 16 3.9623 -0.7083 -0.0018 6 6 2.2582 -1.1415 -0.0005 7 6 1.7283 -2.5082 -0.0003 8 8 0.7854 -2.7954 -0.7141 9 7 2.2853 -3.4468 0.7904 10 6 1.8420 -4.8450 0.7123 11 6 1.4070 -5.3079 2.1027 12 6 2.5223 -5.0108 3.1020 13 6 2.2877 -5.6285 4.4873 14 7 3.7203 -5.9853 4.4563 15 6 4.6660 -6.2401 5.4132 16 1 5.6762 -6.4869 5.1219 17 6 4.3265 -6.1807 6.7579 18 7 3.0955 -5.8790 7.1131 19 14 5.6169 -6.5276 8.0633 20 1 6.2979 -5.2614 8.4349 21 1 4.9631 -7.1087 9.2635 22 1 6.6152 -7.4886 7.5295 23 6 3.7240 -5.9582 2.9799 24 6 2.9107 -3.5349 3.1481 25 6 3.3399 -3.0848 1.7465 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8901 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 1.8201 2.1334 -0.0039 30 1 4.3206 1.7489 -0.0002 31 1 1.0013 -4.9238 0.0231 32 1 2.6637 -5.4700 0.3629 33 1 1.2086 -6.3795 2.0860 34 1 0.5029 -4.7745 2.3965 35 1 2.0327 -4.8993 5.2563 36 1 1.6197 -6.4897 4.4772 37 1 2.8581 -5.8379 8.0527 38 1 3.4829 -6.9176 2.5219 39 1 4.6105 -5.4911 2.5510 40 1 3.7380 -3.3975 3.8443 41 1 2.0565 -2.9423 3.4755 42 1 4.2695 -3.5831 1.4713 43 1 3.4856 -2.0046 1.7383 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035639754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:57 Heat of formation + Delta-G solvation = 36.911572 kcal Electronic energy + Delta-G solvation = -25176.093279 eV Core-core repulsion = 21734.956552 eV Total energy + Delta-G solvation = -3441.136727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65379 -40.30781 -38.76716 -37.05634 -34.43265 -32.79979 -31.88105 -31.71432 -29.44189 -28.36404 -26.73270 -25.31496 -24.52051 -24.24467 -23.05321 -21.64883 -19.75404 -19.25272 -18.68042 -18.35376 -17.31924 -16.86588 -16.77111 -16.31331 -16.09814 -15.83951 -15.61295 -15.12528 -14.85342 -14.56272 -14.45841 -14.16024 -13.94699 -13.70075 -13.61876 -13.22710 -13.11008 -13.01247 -12.89911 -12.80184 -12.72067 -12.55886 -12.18272 -12.16213 -11.89812 -11.64041 -11.61404 -11.13532 -11.06067 -10.97942 -10.79765 -9.83767 -9.57163 -9.26971 -8.85669 -7.86406 -5.18722 -0.37036 0.45689 0.98492 1.46566 1.47123 1.48046 1.56354 1.81695 2.13340 2.49967 3.33881 3.42120 3.50225 3.62944 3.82295 3.98727 4.07556 4.13515 4.28410 4.30646 4.36493 4.40152 4.55075 4.62899 4.64875 4.73226 4.75889 4.83149 4.84947 4.91692 5.02222 5.05184 5.06544 5.15231 5.19542 5.30041 5.32595 5.39489 5.45897 5.51064 5.61202 5.73964 5.98248 6.30449 6.96151 7.01946 7.65721 8.62792 9.30381 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.003442 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.091786 B = 8132.685244 C = 8781.774042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.039 4.039 3 C -0.154 4.154 4 C -0.227 4.227 5 S 0.229 5.771 6 C -0.306 4.306 7 C 0.590 3.410 8 O -0.567 6.567 9 N -0.600 5.600 10 C 0.120 3.880 11 C -0.109 4.109 12 C -0.083 4.083 13 C 0.168 3.832 14 N -0.636 5.636 15 C -0.229 4.229 16 H 0.083 0.917 17 C -0.067 4.067 18 N -0.954 5.954 19 Si 0.974 3.026 20 H -0.285 1.285 21 H -0.298 1.298 22 H -0.270 1.270 23 C 0.130 3.870 24 C -0.089 4.089 25 C 0.109 3.891 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.168 0.832 30 H 0.199 0.801 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.011 0.989 37 H 0.246 0.754 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 14.191 -16.879 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.054 4.054 3 C -0.185 4.185 4 C -0.364 4.364 5 S 0.498 5.502 6 C -0.426 4.426 7 C 0.379 3.621 8 O -0.448 6.448 9 N -0.331 5.331 10 C -0.002 4.002 11 C -0.148 4.148 12 C -0.084 4.084 13 C 0.042 3.958 14 N -0.362 5.362 15 C -0.358 4.358 16 H 0.101 0.899 17 C -0.260 4.260 18 N -0.604 5.604 19 Si 0.803 3.197 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.195 1.195 23 C 0.005 3.995 24 C -0.127 4.127 25 C -0.014 4.014 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.185 0.815 30 H 0.216 0.784 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.143 13.161 -16.954 21.493 hybrid contribution -0.957 0.212 1.378 1.691 sum 0.185 13.373 -15.576 20.530 Atomic orbital electron populations 1.20532 0.88864 1.02849 1.03011 1.19741 0.98068 0.91008 0.96615 1.20083 0.92725 0.99847 1.05815 1.25759 1.01178 1.02415 1.07091 1.83167 1.01494 0.98388 1.67188 1.24373 0.99562 0.96681 1.21959 1.17284 0.81747 0.83677 0.79386 1.90761 1.28982 1.81375 1.43674 1.48044 1.38709 1.08739 1.37632 1.21549 1.01137 0.80172 0.97301 1.21657 0.97374 1.01951 0.93785 1.22118 0.95788 0.95243 0.95290 1.22155 0.85361 0.94845 0.93398 1.46314 1.06789 1.81751 1.01348 1.19418 0.90865 1.39114 0.86381 0.89902 1.25555 0.98417 1.03125 0.98855 1.70020 1.18817 1.56233 1.15298 0.85144 0.78216 0.77811 0.78569 1.21148 1.22494 1.19474 1.22759 0.96195 0.96113 0.84387 1.21356 1.01233 0.93817 0.96289 1.22087 0.90033 1.01892 0.87426 0.90305 0.93306 0.89018 0.81472 0.78436 0.89315 0.89589 0.89747 0.92248 0.94504 0.97110 0.94513 0.93766 0.92484 0.91514 0.92528 0.89500 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.92 9.51 71.24 0.68 -1.24 16 2 C -0.04 -0.84 5.90 -20.42 -0.12 -0.96 16 3 C -0.15 -2.48 9.97 21.08 0.21 -2.27 16 4 C -0.23 -3.22 10.92 66.82 0.73 -2.49 16 5 S 0.23 4.09 20.18 -56.49 -1.14 2.95 16 6 C -0.31 -7.49 5.33 24.08 0.13 -7.36 16 7 C 0.59 17.28 7.02 86.42 0.61 17.89 16 8 O -0.57 -19.69 15.48 -4.33 -0.07 -19.76 16 9 N -0.60 -16.25 2.95 -824.31 -2.43 -18.68 16 10 C 0.12 3.13 6.29 86.26 0.54 3.68 16 11 C -0.11 -3.17 5.24 30.44 0.16 -3.02 16 12 C -0.08 -2.93 0.77 -52.03 -0.04 -2.97 16 13 C 0.17 7.94 6.64 86.31 0.57 8.51 16 14 N -0.64 -31.80 3.53 -722.74 -2.55 -34.35 16 15 C -0.23 -12.68 10.70 84.03 0.90 -11.78 16 16 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 17 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 18 N -0.95 -57.75 11.39 21.65 0.25 -57.50 16 19 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C 0.13 4.92 7.72 86.32 0.67 5.58 16 24 C -0.09 -2.88 5.22 30.60 0.16 -2.72 16 25 C 0.11 2.78 5.57 86.42 0.48 3.26 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.22 7.31 -2.39 -0.02 1.20 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.09 2.39 6.97 -2.39 -0.02 2.37 16 32 H 0.09 1.98 8.07 -2.39 -0.02 1.96 16 33 H 0.08 2.34 8.12 -2.39 -0.02 2.32 16 34 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.04 1.98 7.12 -2.39 -0.02 1.96 16 36 H 0.01 0.55 8.09 -2.39 -0.02 0.53 16 37 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.04 1.60 8.07 -2.39 -0.02 1.58 16 39 H 0.06 1.98 7.41 -2.39 -0.02 1.96 16 40 H 0.07 2.49 8.01 -2.39 -0.02 2.48 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.09 2.03 7.49 -2.39 -0.02 2.02 16 43 H 0.10 2.25 4.49 -11.08 -0.05 2.20 16 Total: -1.00 -70.65 352.69 3.19 -67.46 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.97 Total: 11.51 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 6.14 Total: 0.79 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.74 Total: -110.54 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.07 Total: -19.76 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.14 Total: 2.95 kcal Total: -70.65 3.19 -67.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035639754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.372 kcal (2) G-P(sol) polarization free energy of solvation -70.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds