Wall clock time and date at job start Tue Mar 31 2020 12:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32777 * 123.45714 * 2 1 4 4 S 1.75506 * 110.57525 * 180.02562 * 3 2 1 5 5 C 1.70446 * 92.44235 * 0.02562 * 4 3 2 6 6 C 1.36006 * 110.82223 * 359.71960 * 5 4 3 7 7 C 1.47185 * 123.46654 * 180.25578 * 6 5 4 8 8 O 1.21636 * 120.00149 * 233.50638 * 7 6 5 9 9 N 1.34780 * 119.99864 * 53.50232 * 7 6 5 10 10 C 1.46883 * 120.46193 * 185.60863 * 9 7 6 11 11 C 1.52859 * 109.01495 * 235.48625 * 10 9 7 12 12 C 1.52679 * 109.17531 * 307.81713 * 11 10 9 13 13 C 1.53475 * 113.62073 * 188.99616 * 12 11 10 14 14 N 1.47664 * 85.98690 * 137.70898 * 13 12 11 15 15 C 1.36940 * 134.46156 * 155.71535 * 14 13 12 16 16 H 1.07995 * 120.00583 * 179.97438 * 15 14 13 17 17 C 1.38818 * 119.99741 * 359.94796 * 15 14 13 18 18 N 1.31618 * 119.99922 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99995 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47288 * 59.99955 * 19 17 15 21 21 H 1.48499 * 109.46890 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46913 * 300.00075 * 19 17 15 23 23 C 1.47661 * 91.08745 * 335.68111 * 14 13 12 24 24 C 1.52675 * 113.18046 * 57.46379 * 12 11 10 25 25 C 1.46877 * 120.46655 * 5.88119 * 9 7 6 26 26 H 1.08992 * 109.47336 * 90.01816 * 1 2 3 27 27 H 1.09001 * 109.46949 * 330.01591 * 1 2 3 28 28 H 1.08999 * 109.47093 * 210.02116 * 1 2 3 29 29 H 1.08004 * 124.71121 * 0.02562 * 3 2 1 30 30 H 1.08003 * 124.58604 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.59104 * 355.31109 * 10 9 7 32 32 H 1.09001 * 109.58944 * 115.74504 * 10 9 7 33 33 H 1.09004 * 109.60801 * 187.84220 * 11 10 9 34 34 H 1.08996 * 109.44948 * 67.69672 * 11 10 9 35 35 H 1.09004 * 113.79179 * 251.97262 * 13 12 11 36 36 H 1.09003 * 113.79557 * 23.43942 * 13 12 11 37 37 H 0.96998 * 120.00099 * 179.97438 * 18 17 15 38 38 H 1.09010 * 113.79188 * 270.05175 * 23 14 13 39 39 H 1.09003 * 113.79702 * 138.58382 * 23 14 13 40 40 H 1.08999 * 109.52608 * 182.51898 * 24 12 11 41 41 H 1.09001 * 109.59169 * 62.33450 * 24 12 11 42 42 H 1.09004 * 109.58989 * 244.25589 * 25 9 7 43 43 H 1.08994 * 109.58792 * 4.69130 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1078 0.0000 4 16 3.9499 0.7165 -0.0007 5 6 3.6410 -0.9598 -0.0018 6 6 2.3033 -1.2049 0.0046 7 6 1.7262 -2.5589 0.0109 8 8 0.9078 -2.8752 -0.8315 9 7 2.1047 -3.4484 0.9501 10 6 1.6303 -4.8374 0.8945 11 6 0.9468 -5.1836 2.2172 12 6 1.8848 -4.8390 3.3716 13 6 1.3937 -5.3447 4.7349 14 7 2.7962 -5.7372 4.9781 15 6 3.5542 -5.9419 6.1002 16 1 4.5896 -6.2342 6.0065 17 6 2.9917 -5.7731 7.3580 18 7 1.7298 -5.4169 7.4721 19 14 4.0257 -6.0516 8.8886 20 1 5.1796 -5.1168 8.8832 21 1 3.1969 -5.8089 10.0966 22 1 4.5224 -7.4510 8.9025 23 6 3.0539 -5.8215 3.5266 24 6 2.3133 -3.3736 3.3808 25 6 2.9925 -3.0408 2.0470 26 1 -0.3633 -0.0003 -1.0276 27 1 -0.3633 0.8901 0.5136 28 1 -0.3633 -0.8898 0.5142 29 1 1.8374 2.1103 0.0004 30 1 4.4044 -1.7238 -0.0029 31 1 0.9178 -4.9477 0.0770 32 1 2.4764 -5.5065 0.7375 33 1 0.7151 -6.2484 2.2414 34 1 0.0261 -4.6080 2.3115 35 1 1.0377 -4.5538 5.3951 36 1 0.7061 -6.1880 4.6695 37 1 1.3366 -5.2993 8.3510 38 1 2.8597 -6.8066 3.1020 39 1 4.0174 -5.4096 3.2263 40 1 3.0136 -3.2040 4.1986 41 1 1.4380 -2.7377 3.5127 42 1 3.9365 -3.5808 1.9729 43 1 3.1770 -1.9682 1.9885 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035678310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:28 Heat of formation + Delta-G solvation = 51.655816 kcal Electronic energy + Delta-G solvation = -25205.313046 eV Core-core repulsion = 21764.815677 eV Total energy + Delta-G solvation = -3440.497369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51224 -38.95627 -37.27683 -35.69395 -32.61943 -31.72643 -30.69515 -30.23861 -27.92359 -26.84083 -25.12414 -24.60686 -23.16865 -23.02716 -21.35592 -20.29889 -18.69992 -17.94026 -17.33061 -16.71230 -16.55345 -15.82184 -15.10419 -14.86005 -14.69600 -14.36278 -13.93313 -13.76272 -13.66925 -13.52285 -13.34965 -12.97201 -12.69471 -12.45447 -12.27131 -12.16408 -12.01916 -11.96137 -11.66105 -11.17065 -11.06247 -11.03345 -10.85380 -10.83437 -10.40224 -10.23909 -9.81070 -9.69876 -9.52814 -9.33984 -9.02227 -8.77430 -8.52885 -8.37948 -6.84824 -5.75159 -3.06956 0.70458 1.38731 1.72228 2.00341 2.81553 3.22982 3.39062 3.43520 3.44704 4.46545 4.50306 4.61198 4.96357 5.01757 5.08446 5.15347 5.17846 5.31434 5.35963 5.39442 5.49936 5.55717 5.59593 5.62505 5.68051 5.76466 5.86085 5.90139 6.00361 6.06839 6.17359 6.24386 6.29120 6.35146 6.51346 6.61278 6.65224 6.82208 6.84530 7.25411 7.38901 7.47290 7.59573 8.00258 8.18965 9.06405 9.72673 10.63432 11.41668 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.003368 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.731880 B = 8312.373325 C = 9022.648536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.060 4.060 3 C -0.240 4.240 4 S 0.174 5.826 5 C -0.213 4.213 6 C -0.139 4.139 7 C 0.579 3.421 8 O -0.541 6.541 9 N -0.597 5.597 10 C 0.115 3.885 11 C -0.117 4.117 12 C -0.109 4.109 13 C 0.173 3.827 14 N -0.609 5.609 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.127 3.873 24 C -0.095 4.095 25 C 0.105 3.895 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 12.057 -16.118 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 C -0.374 4.374 4 S 0.441 5.559 5 C -0.351 4.351 6 C -0.157 4.157 7 C 0.365 3.635 8 O -0.419 6.419 9 N -0.329 5.329 10 C -0.007 4.007 11 C -0.156 4.156 12 C -0.110 4.110 13 C 0.048 3.952 14 N -0.335 5.335 15 C -0.351 4.351 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.739 3.261 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.001 3.999 24 C -0.134 4.134 25 C -0.018 4.018 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.185 0.815 30 H 0.188 0.812 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.459 12.743 -16.186 20.747 hybrid contribution -0.630 -1.332 1.054 1.812 sum 1.829 11.411 -15.132 19.040 Atomic orbital electron populations 1.20474 0.88932 1.02856 1.02877 1.19814 0.97243 0.89980 1.00070 1.25260 0.96442 1.02487 1.13256 1.82997 1.05599 0.97010 1.70264 1.25543 0.99341 1.02536 1.07682 1.20122 0.92459 0.94327 1.08790 1.17679 0.81006 0.83603 0.81218 1.90772 1.33295 1.78945 1.38874 1.48034 1.48505 1.10592 1.25747 1.21550 0.99330 0.80668 0.99119 1.21737 0.98662 1.01577 0.93647 1.22379 0.97195 0.94975 0.96463 1.22227 0.87294 0.96531 0.89142 1.45962 1.07995 1.80359 0.99148 1.18964 0.92898 1.40067 0.83128 0.90508 1.24748 0.96190 1.02199 0.97187 1.69806 1.11505 1.53015 1.22479 0.86250 0.79092 0.77971 0.82742 1.21134 1.21595 1.21292 1.22585 0.95511 0.95144 0.86702 1.21472 1.00865 0.95137 0.95882 1.21965 0.92843 1.00535 0.86419 0.90589 0.91313 0.91162 0.81487 0.81239 0.89382 0.91417 0.90683 0.91836 0.91014 0.95751 0.93665 0.95149 0.94266 0.89399 0.92092 0.91234 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.76 36.01 0.35 -0.62 16 2 C -0.06 -0.68 6.01 -104.06 -0.63 -1.30 16 3 C -0.24 -2.21 10.91 28.86 0.31 -1.90 16 4 S 0.17 1.48 23.02 -107.50 -2.48 -1.00 16 5 C -0.21 -2.21 8.77 29.93 0.26 -1.95 16 6 C -0.14 -1.75 4.70 -104.63 -0.49 -2.24 16 7 C 0.58 8.57 6.69 -12.63 -0.08 8.49 16 8 O -0.54 -9.48 16.23 5.25 0.09 -9.40 16 9 N -0.60 -8.32 2.95 -174.31 -0.51 -8.84 16 10 C 0.12 1.59 6.29 -3.91 -0.02 1.57 16 11 C -0.12 -1.76 5.24 -26.97 -0.14 -1.90 16 12 C -0.11 -1.93 0.77 -154.43 -0.12 -2.05 16 13 C 0.17 3.98 6.64 -3.17 -0.02 3.96 16 14 N -0.61 -15.13 3.53 -179.81 -0.64 -15.77 16 15 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 18 N -0.92 -27.02 11.39 55.49 0.63 -26.38 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.13 2.48 7.72 -3.15 -0.02 2.45 16 24 C -0.10 -1.56 5.22 -26.73 -0.14 -1.70 16 25 C 0.10 1.40 5.72 -3.66 -0.02 1.37 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.07 0.85 7.66 -51.93 -0.40 0.46 16 29 H 0.17 1.14 8.06 -52.48 -0.42 0.71 16 30 H 0.17 1.53 7.98 -52.48 -0.42 1.11 16 31 H 0.09 1.24 6.97 -51.93 -0.36 0.88 16 32 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 36 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.03 0.59 8.07 -51.92 -0.42 0.17 16 39 H 0.04 0.73 7.41 -51.93 -0.38 0.34 16 40 H 0.09 1.64 8.01 -51.93 -0.42 1.22 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.89 7.49 -51.93 -0.39 0.50 16 43 H 0.08 1.01 5.29 -51.93 -0.27 0.73 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -31.97 355.67 -9.94 -41.92 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.35 Total: -0.39 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.02 Total: -2.42 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.52 Total: -50.99 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.48 Total: -1.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.97 -9.94 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035678310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.571 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds