Wall clock time and date at job start Tue Mar 31 2020 12:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32777 * 123.45714 * 2 1 4 4 S 1.75506 * 110.57525 * 180.02562 * 3 2 1 5 5 C 1.70446 * 92.44235 * 0.02562 * 4 3 2 6 6 C 1.36006 * 110.82223 * 359.71960 * 5 4 3 7 7 C 1.47185 * 123.46654 * 180.25578 * 6 5 4 8 8 O 1.21636 * 120.00149 * 233.50638 * 7 6 5 9 9 N 1.34780 * 119.99864 * 53.50232 * 7 6 5 10 10 C 1.46883 * 120.46193 * 185.60863 * 9 7 6 11 11 C 1.52859 * 109.01495 * 235.48625 * 10 9 7 12 12 C 1.52679 * 109.17531 * 307.81713 * 11 10 9 13 13 C 1.53475 * 113.62073 * 188.99616 * 12 11 10 14 14 N 1.47664 * 85.98690 * 137.70898 * 13 12 11 15 15 C 1.36940 * 134.46156 * 155.71535 * 14 13 12 16 16 H 1.07995 * 120.00583 * 179.97438 * 15 14 13 17 17 C 1.38818 * 119.99741 * 359.94796 * 15 14 13 18 18 N 1.31618 * 119.99922 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99995 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47288 * 59.99955 * 19 17 15 21 21 H 1.48499 * 109.46890 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46913 * 300.00075 * 19 17 15 23 23 C 1.47661 * 91.08745 * 335.68111 * 14 13 12 24 24 C 1.52675 * 113.18046 * 57.46379 * 12 11 10 25 25 C 1.46877 * 120.46655 * 5.88119 * 9 7 6 26 26 H 1.08992 * 109.47336 * 90.01816 * 1 2 3 27 27 H 1.09001 * 109.46949 * 330.01591 * 1 2 3 28 28 H 1.08999 * 109.47093 * 210.02116 * 1 2 3 29 29 H 1.08004 * 124.71121 * 0.02562 * 3 2 1 30 30 H 1.08003 * 124.58604 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.59104 * 355.31109 * 10 9 7 32 32 H 1.09001 * 109.58944 * 115.74504 * 10 9 7 33 33 H 1.09004 * 109.60801 * 187.84220 * 11 10 9 34 34 H 1.08996 * 109.44948 * 67.69672 * 11 10 9 35 35 H 1.09004 * 113.79179 * 251.97262 * 13 12 11 36 36 H 1.09003 * 113.79557 * 23.43942 * 13 12 11 37 37 H 0.96998 * 120.00099 * 179.97438 * 18 17 15 38 38 H 1.09010 * 113.79188 * 270.05175 * 23 14 13 39 39 H 1.09003 * 113.79702 * 138.58382 * 23 14 13 40 40 H 1.08999 * 109.52608 * 182.51898 * 24 12 11 41 41 H 1.09001 * 109.59169 * 62.33450 * 24 12 11 42 42 H 1.09004 * 109.58989 * 244.25589 * 25 9 7 43 43 H 1.08994 * 109.58792 * 4.69130 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1078 0.0000 4 16 3.9499 0.7165 -0.0007 5 6 3.6410 -0.9598 -0.0018 6 6 2.3033 -1.2049 0.0046 7 6 1.7262 -2.5589 0.0109 8 8 0.9078 -2.8752 -0.8315 9 7 2.1047 -3.4484 0.9501 10 6 1.6303 -4.8374 0.8945 11 6 0.9468 -5.1836 2.2172 12 6 1.8848 -4.8390 3.3716 13 6 1.3937 -5.3447 4.7349 14 7 2.7962 -5.7372 4.9781 15 6 3.5542 -5.9419 6.1002 16 1 4.5896 -6.2342 6.0065 17 6 2.9917 -5.7731 7.3580 18 7 1.7298 -5.4169 7.4721 19 14 4.0257 -6.0516 8.8886 20 1 5.1796 -5.1168 8.8832 21 1 3.1969 -5.8089 10.0966 22 1 4.5224 -7.4510 8.9025 23 6 3.0539 -5.8215 3.5266 24 6 2.3133 -3.3736 3.3808 25 6 2.9925 -3.0408 2.0470 26 1 -0.3633 -0.0003 -1.0276 27 1 -0.3633 0.8901 0.5136 28 1 -0.3633 -0.8898 0.5142 29 1 1.8374 2.1103 0.0004 30 1 4.4044 -1.7238 -0.0029 31 1 0.9178 -4.9477 0.0770 32 1 2.4764 -5.5065 0.7375 33 1 0.7151 -6.2484 2.2414 34 1 0.0261 -4.6080 2.3115 35 1 1.0377 -4.5538 5.3951 36 1 0.7061 -6.1880 4.6695 37 1 1.3366 -5.2993 8.3510 38 1 2.8597 -6.8066 3.1020 39 1 4.0174 -5.4096 3.2263 40 1 3.0136 -3.2040 4.1986 41 1 1.4380 -2.7377 3.5127 42 1 3.9365 -3.5808 1.9729 43 1 3.1770 -1.9682 1.9885 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035678310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:27 Heat of formation + Delta-G solvation = 33.423280 kcal Electronic energy + Delta-G solvation = -25206.103668 eV Core-core repulsion = 21764.815677 eV Total energy + Delta-G solvation = -3441.287991 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71936 -40.33441 -38.21283 -37.05406 -34.43817 -32.91772 -31.87966 -31.59206 -28.96713 -28.37935 -26.76775 -25.85317 -24.41889 -24.31882 -22.83666 -21.45357 -19.80925 -18.80925 -18.67992 -18.40243 -17.74338 -16.92758 -16.82276 -16.18035 -16.12927 -15.63222 -15.38733 -15.10280 -14.75269 -14.58610 -14.25930 -14.15552 -14.02085 -13.73020 -13.59583 -13.31942 -13.13871 -12.98522 -12.89097 -12.78071 -12.75290 -12.61359 -12.22340 -12.14893 -11.90323 -11.64998 -11.63848 -11.13148 -10.98645 -10.93484 -10.78456 -9.80155 -9.64205 -9.18888 -8.86299 -7.86731 -5.19221 -0.07720 0.68141 0.95318 1.15127 1.46022 1.48869 1.54983 1.75835 2.18069 2.49720 3.33286 3.42671 3.58046 3.65353 3.78212 3.86741 4.09727 4.16225 4.23791 4.32347 4.37475 4.41470 4.57310 4.62804 4.65159 4.73587 4.75468 4.81453 4.84235 4.86346 4.91272 4.96185 5.06254 5.15405 5.20397 5.29481 5.30581 5.33517 5.44515 5.53669 5.60776 5.74598 5.97779 6.35906 6.95459 7.08411 7.65256 8.62407 9.29839 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.003368 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.731880 B = 8312.373325 C = 9022.648536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.087 4.087 3 C -0.236 4.236 4 S 0.231 5.769 5 C -0.217 4.217 6 C -0.170 4.170 7 C 0.579 3.421 8 O -0.575 6.575 9 N -0.597 5.597 10 C 0.119 3.881 11 C -0.109 4.109 12 C -0.082 4.082 13 C 0.167 3.833 14 N -0.636 5.636 15 C -0.232 4.232 16 H 0.083 0.917 17 C -0.066 4.066 18 N -0.954 5.954 19 Si 0.974 3.026 20 H -0.274 1.274 21 H -0.297 1.297 22 H -0.280 1.280 23 C 0.130 3.870 24 C -0.090 4.090 25 C 0.118 3.882 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.192 0.808 30 H 0.183 0.817 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.010 0.990 37 H 0.246 0.754 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 13.293 -17.424 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.371 4.371 4 S 0.499 5.501 5 C -0.354 4.354 6 C -0.188 4.188 7 C 0.367 3.633 8 O -0.456 6.456 9 N -0.328 5.328 10 C -0.003 4.003 11 C -0.148 4.148 12 C -0.083 4.083 13 C 0.042 3.958 14 N -0.362 5.362 15 C -0.360 4.360 16 H 0.101 0.899 17 C -0.259 4.259 18 N -0.603 5.603 19 Si 0.803 3.197 20 H -0.200 1.200 21 H -0.223 1.223 22 H -0.206 1.206 23 C 0.006 3.994 24 C -0.129 4.129 25 C -0.004 4.004 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.210 0.790 30 H 0.200 0.800 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.028 0.972 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.603 13.979 -17.522 22.883 hybrid contribution -1.250 -1.672 1.425 2.528 sum 3.353 12.307 -16.097 20.538 Atomic orbital electron populations 1.20435 0.89100 1.02636 1.02668 1.19926 0.97550 0.90365 1.01934 1.25616 0.97131 1.03049 1.11309 1.82860 1.04239 0.94764 1.68198 1.25816 0.98790 1.04507 1.06334 1.20070 0.93549 0.93441 1.11782 1.18044 0.80301 0.84383 0.80568 1.90743 1.34918 1.79719 1.40237 1.48075 1.48437 1.10595 1.25702 1.21521 0.99849 0.81086 0.97798 1.21654 0.97841 1.02033 0.93246 1.22111 0.96366 0.95479 0.94381 1.22158 0.86650 0.95228 0.91783 1.46309 1.08626 1.80462 1.00792 1.19386 0.93553 1.38707 0.84362 0.89929 1.25560 0.97343 1.02865 1.00135 1.70012 1.13183 1.54744 1.22399 0.85216 0.77635 0.78098 0.78781 1.20000 1.22328 1.20636 1.22751 0.96923 0.96146 0.83598 1.21377 1.00372 0.93991 0.97134 1.21887 0.92600 1.01810 0.84153 0.90858 0.89248 0.93601 0.79044 0.79954 0.89548 0.89671 0.89925 0.92338 0.94540 0.97223 0.94490 0.93892 0.92479 0.91733 0.92643 0.89711 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.76 71.24 0.69 -1.15 16 2 C -0.09 -1.85 6.01 -19.47 -0.12 -1.97 16 3 C -0.24 -3.69 10.91 66.64 0.73 -2.96 16 4 S 0.23 3.14 23.02 -56.49 -1.30 1.84 16 5 C -0.22 -3.91 8.77 67.30 0.59 -3.32 16 6 C -0.17 -4.03 4.70 -19.87 -0.09 -4.12 16 7 C 0.58 16.67 6.69 86.59 0.58 17.25 16 8 O -0.58 -20.18 16.23 -4.14 -0.07 -20.24 16 9 N -0.60 -15.77 2.95 -823.65 -2.43 -18.20 16 10 C 0.12 3.10 6.29 86.26 0.54 3.65 16 11 C -0.11 -3.19 5.24 30.44 0.16 -3.03 16 12 C -0.08 -2.89 0.77 -52.03 -0.04 -2.93 16 13 C 0.17 7.94 6.64 86.31 0.57 8.51 16 14 N -0.64 -31.86 3.53 -722.81 -2.55 -34.41 16 15 C -0.23 -12.83 10.70 84.03 0.90 -11.93 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 17 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 18 N -0.95 -57.82 11.39 21.65 0.25 -57.57 16 19 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 C 0.13 4.93 7.72 86.32 0.67 5.60 16 24 C -0.09 -2.92 5.22 30.60 0.16 -2.76 16 25 C 0.12 2.90 5.72 86.42 0.49 3.40 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 1.38 8.13 -2.39 -0.02 1.36 16 28 H 0.04 1.14 7.66 -2.39 -0.02 1.12 16 29 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.18 2.70 7.98 -2.91 -0.02 2.68 16 31 H 0.09 2.35 6.97 -2.39 -0.02 2.33 16 32 H 0.09 1.95 8.08 -2.39 -0.02 1.93 16 33 H 0.08 2.31 8.12 -2.38 -0.02 2.30 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.04 1.97 7.12 -2.38 -0.02 1.95 16 36 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 37 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.04 1.56 8.07 -2.38 -0.02 1.54 16 39 H 0.06 1.97 7.41 -2.39 -0.02 1.95 16 40 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 1.89 7.49 -2.38 -0.02 1.87 16 43 H 0.10 2.17 5.29 -2.39 -0.01 2.16 16 Total: -1.00 -71.01 355.67 3.23 -67.78 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.01 Total: 12.30 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 6.30 Total: 0.94 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -4.74 Total: -110.19 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.07 Total: -20.24 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.30 Total: 1.84 kcal Total: -71.01 3.23 -67.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035678310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.205 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds