Wall clock time and date at job start Tue Mar 31 2020 12:14:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.37475 * 123.34969 * 2 1
4 4 C 1.33823 * 115.09657 * 179.97438 * 3 2 1
5 5 S 1.70615 * 110.95838 * 359.76374 * 4 3 2
6 6 C 1.36647 * 123.35542 * 179.97438 * 2 1 3
7 7 C 1.46588 * 125.45548 * 359.97438 * 6 2 1
8 8 O 1.21696 * 120.00159 * 321.49798 * 7 6 2
9 9 N 1.34770 * 119.99751 * 141.49478 * 7 6 2
10 10 C 1.46599 * 119.68585 * 174.70737 * 9 7 6
11 11 C 1.53951 * 110.58267 * 132.19352 * 10 9 7
12 12 C 1.51521 * 107.34057 * 51.05476 * 11 10 9
13 13 H 1.08994 * 108.81012 * 53.44324 * 12 11 10
14 14 C 1.55093 * 107.77053 * 295.29414 * 12 11 10
15 15 H 1.08998 * 111.34105 * 309.00402 * 14 12 11
16 16 C 1.53747 * 100.32368 * 191.11806 * 14 12 11
17 17 C 1.55289 * 101.84101 * 38.95113 * 16 14 12
18 18 N 1.45478 * 117.34529 * 178.09342 * 12 11 10
19 19 C 1.36931 * 126.40554 * 329.41605 * 18 12 11
20 20 H 1.07998 * 119.99884 * 6.71722 * 19 18 12
21 21 C 1.38812 * 119.99969 * 186.72306 * 19 18 12
22 22 N 1.31624 * 119.99889 * 25.99280 * 21 19 18
23 23 Si 1.86799 * 119.99820 * 205.99607 * 21 19 18
24 24 H 1.48498 * 109.46855 * 265.58935 * 23 21 19
25 25 H 1.48504 * 109.47200 * 145.59481 * 23 21 19
26 26 H 1.48492 * 109.47337 * 25.58922 * 23 21 19
27 27 C 1.47799 * 119.83722 * 355.05230 * 9 7 6
28 28 H 1.09008 * 109.46858 * 270.02141 * 1 2 3
29 29 H 1.09000 * 109.47393 * 30.01784 * 1 2 3
30 30 H 1.09001 * 109.47286 * 150.02266 * 1 2 3
31 31 H 1.07995 * 122.45220 * 359.97438 * 3 2 1
32 32 H 1.08005 * 124.51811 * 179.97438 * 4 3 2
33 33 H 1.09008 * 109.25175 * 11.90998 * 10 9 7
34 34 H 1.09004 * 109.25575 * 252.48224 * 10 9 7
35 35 H 1.08998 * 109.87965 * 291.59793 * 11 10 9
36 36 H 1.08993 * 109.88366 * 170.51233 * 11 10 9
37 37 H 1.09005 * 110.95430 * 280.81353 * 16 14 12
38 38 H 1.08998 * 110.95264 * 157.09202 * 16 14 12
39 39 H 1.08997 * 109.91821 * 218.17218 * 17 16 14
40 40 H 1.08993 * 110.08752 * 96.96145 * 17 16 14
41 41 H 0.97002 * 119.99371 * 180.02562 * 22 21 19
42 42 H 1.09000 * 110.64301 * 112.73460 * 27 9 7
43 43 H 1.08999 * 109.73229 * 351.01146 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2627 1.1484 0.0000
4 6 3.5871 0.9563 0.0005
5 16 3.9623 -0.7081 0.0077
6 6 2.2582 -1.1414 0.0005
7 6 1.7284 -2.5081 0.0017
8 8 0.7397 -2.7770 0.6583
9 7 2.3362 -3.4670 -0.7246
10 6 1.8724 -4.8544 -0.6282
11 6 1.6940 -5.4640 -2.0306
12 6 2.9765 -5.2145 -2.7980
13 1 3.8153 -5.5903 -2.2123
14 6 3.1300 -3.6816 -2.9775
15 1 2.2227 -3.2373 -3.3868
16 6 4.2818 -3.6374 -3.9950
17 6 3.9310 -4.8300 -4.9256
18 7 3.0598 -5.7440 -4.1504
19 6 2.4434 -6.8727 -4.6207
20 1 1.7388 -7.4028 -3.9971
21 6 2.7243 -7.3356 -5.8988
22 7 3.8816 -7.0563 -6.4603
23 14 1.4600 -8.3549 -6.8218
24 1 1.7365 -9.7982 -6.6083
25 1 1.5379 -8.0453 -8.2722
26 1 0.1008 -8.0315 -6.3189
27 6 3.4693 -3.1149 -1.6058
28 1 -0.3633 0.0004 1.0278
29 1 -0.3634 0.8898 -0.5141
30 1 -0.3634 -0.8902 -0.5135
31 1 1.8200 2.1334 -0.0004
32 1 4.3205 1.7491 0.0002
33 1 0.9183 -4.8787 -0.1017
34 1 2.6042 -5.4402 -0.0720
35 1 0.8581 -4.9844 -2.5397
36 1 1.5137 -6.5358 -1.9487
37 1 5.2420 -3.7954 -3.5039
38 1 4.2781 -2.6977 -4.5472
39 1 4.8419 -5.3490 -5.2235
40 1 3.4017 -4.4725 -5.8088
41 1 4.0777 -7.3795 -7.3536
42 1 4.3948 -3.5569 -1.2370
43 1 3.5680 -2.0309 -1.6630
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001036620011.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:09
Heat of formation + Delta-G solvation = 30.734494 kcal
Electronic energy + Delta-G solvation = -25359.679515 eV
Core-core repulsion = 21918.274929 eV
Total energy + Delta-G solvation = -3441.404585 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.36560 -38.75568 -37.67996 -35.28347 -32.62519 -32.16687 -30.98275 -29.75717
-28.51615 -27.79145 -25.00275 -23.93746 -23.32128 -22.51474 -20.72523 -20.13299
-19.55136 -18.40182 -17.93584 -16.69047 -16.01205 -15.85729 -15.21701 -15.01052
-14.99143 -14.47617 -13.99034 -13.81121 -13.56441 -13.39464 -13.14286 -12.94539
-12.80315 -12.50286 -12.28930 -12.13809 -12.01736 -11.73968 -11.52492 -11.37225
-11.09776 -10.93956 -10.72074 -10.64314 -10.31947 -10.17221 -9.95311 -9.93021
-9.63311 -9.56756 -8.94478 -8.60916 -8.48263 -8.44062 -6.86590 -5.80019
-3.04974 0.44227 1.28255 1.73584 2.27662 2.89234 3.17891 3.39549
3.47840 3.50911 4.45616 4.50644 4.68455 4.86823 5.05578 5.10584
5.14158 5.28870 5.30613 5.38657 5.42649 5.51348 5.54004 5.58751
5.76269 5.77488 5.81219 5.83742 5.90133 6.06285 6.15377 6.18071
6.20028 6.25788 6.35575 6.40500 6.54132 6.60332 6.80031 7.02936
7.30095 7.39165 7.57534 7.75670 8.14414 8.18570 9.10927 9.80904
10.48998 11.31651
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.022012 B = 0.003548 C = 0.003320
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1271.738687 B = 7889.166457 C = 8432.216580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C -0.034 4.034
3 C -0.145 4.145
4 C -0.244 4.244
5 S 0.215 5.785
6 C -0.266 4.266
7 C 0.588 3.412
8 O -0.533 6.533
9 N -0.600 5.600
10 C 0.117 3.883
11 C -0.128 4.128
12 C 0.167 3.833
13 H 0.020 0.980
14 C -0.123 4.123
15 H 0.081 0.919
16 C -0.130 4.130
17 C 0.162 3.838
18 N -0.589 5.589
19 C -0.236 4.236
20 H 0.079 0.921
21 C -0.001 4.001
22 N -0.900 5.900
23 Si 0.893 3.107
24 H -0.290 1.290
25 H -0.290 1.290
26 H -0.280 1.280
27 C 0.109 3.891
28 H 0.078 0.922
29 H 0.066 0.934
30 H 0.073 0.927
31 H 0.142 0.858
32 H 0.167 0.833
33 H 0.090 0.910
34 H 0.064 0.936
35 H 0.067 0.933
36 H 0.078 0.922
37 H 0.063 0.937
38 H 0.061 0.939
39 H 0.060 0.940
40 H 0.027 0.973
41 H 0.252 0.748
42 H 0.077 0.923
43 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.782 16.294 12.834 20.757
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.048 4.048
3 C -0.176 4.176
4 C -0.382 4.382
5 S 0.485 5.515
6 C -0.386 4.386
7 C 0.375 3.625
8 O -0.412 6.412
9 N -0.333 5.333
10 C -0.005 4.005
11 C -0.167 4.167
12 C 0.059 3.941
13 H 0.037 0.963
14 C -0.143 4.143
15 H 0.100 0.900
16 C -0.169 4.169
17 C 0.038 3.962
18 N -0.313 5.313
19 C -0.364 4.364
20 H 0.096 0.904
21 C -0.199 4.199
22 N -0.545 5.545
23 Si 0.722 3.278
24 H -0.217 1.217
25 H -0.216 1.216
26 H -0.206 1.206
27 C -0.014 4.014
28 H 0.096 0.904
29 H 0.085 0.915
30 H 0.092 0.908
31 H 0.160 0.840
32 H 0.185 0.815
33 H 0.109 0.891
34 H 0.083 0.917
35 H 0.086 0.914
36 H 0.096 0.904
37 H 0.081 0.919
38 H 0.080 0.920
39 H 0.078 0.922
40 H 0.045 0.955
41 H 0.062 0.938
42 H 0.095 0.905
43 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 1.690 15.162 12.988 20.036
hybrid contribution -1.725 0.449 -0.734 1.928
sum -0.036 15.612 12.254 19.846
Atomic orbital electron populations
1.20532 0.88919 1.02886 1.02997 1.19430 0.97632 0.90469 0.97308
1.19862 0.92571 0.99469 1.05727 1.25378 1.00705 1.02684 1.09382
1.83284 1.03731 0.97146 1.67389 1.24434 0.97526 0.97503 1.19120
1.17014 0.82968 0.82909 0.79563 1.90792 1.25391 1.81518 1.43524
1.48185 1.33641 1.08314 1.43131 1.21686 1.00823 0.79757 0.98270
1.21878 0.99766 1.01211 0.93893 1.20564 0.94625 0.90494 0.88406
0.96300 1.22565 0.99824 0.98719 0.93226 0.90027 1.22621 0.96882
0.99764 0.97611 1.21542 0.95490 0.87452 0.91749 1.44188 1.56598
1.25554 1.04920 1.18868 1.17521 1.01998 0.97974 0.90356 1.24656
0.96736 0.99935 0.98582 1.70101 1.19412 1.49295 1.15730 0.86406
0.82145 0.79572 0.79629 1.21692 1.21607 1.20611 1.22117 0.88455
1.00777 0.90063 0.90379 0.91460 0.90836 0.84010 0.81548 0.89148
0.91723 0.91448 0.90362 0.91869 0.91991 0.92163 0.95469 0.93775
0.90506 0.89640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.03 9.45 36.00 0.34 -0.69 16
2 C -0.03 -0.40 5.90 -105.48 -0.62 -1.02 16
3 C -0.14 -1.38 9.97 -41.41 -0.41 -1.79 16
4 C -0.24 -2.13 10.92 29.18 0.32 -1.81 16
5 S 0.22 2.16 19.82 -107.50 -2.13 0.03 16
6 C -0.27 -3.47 5.44 -36.79 -0.20 -3.67 16
7 C 0.59 9.11 7.10 -12.90 -0.09 9.02 16
8 O -0.53 -9.55 15.14 5.19 0.08 -9.47 16
9 N -0.60 -8.97 2.99 -173.99 -0.52 -9.49 16
10 C 0.12 1.78 6.34 -3.49 -0.02 1.76 16
11 C -0.13 -2.27 5.45 -26.98 -0.15 -2.42 16
12 C 0.17 3.30 2.57 -68.12 -0.18 3.12 16
13 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16
14 C -0.12 -2.06 2.84 -89.51 -0.25 -2.31 16
15 H 0.08 1.48 8.11 -51.93 -0.42 1.05 16
16 C -0.13 -2.23 6.54 -25.13 -0.16 -2.40 16
17 C 0.16 3.74 5.70 -1.91 -0.01 3.73 16
18 N -0.59 -14.43 3.35 -163.26 -0.55 -14.98 16
19 C -0.24 -6.40 9.76 -15.06 -0.15 -6.55 16
20 H 0.08 2.07 7.29 -52.49 -0.38 1.68 16
21 C 0.00 -0.03 5.26 -17.43 -0.09 -0.12 16
22 N -0.90 -26.08 11.35 55.49 0.63 -25.45 16
23 Si 0.89 21.76 29.63 -169.99 -5.04 16.73 16
24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
27 C 0.11 1.50 5.05 -3.72 -0.02 1.48 16
28 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16
29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
30 H 0.07 0.94 7.19 -51.93 -0.37 0.57 16
31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16
32 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16
33 H 0.09 1.40 6.92 -51.92 -0.36 1.04 16
34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16
36 H 0.08 1.41 7.63 -51.93 -0.40 1.01 16
37 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16
38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
39 H 0.06 1.55 7.13 -51.93 -0.37 1.18 16
40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16
41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16
42 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16
43 H 0.09 1.06 4.44 -33.93 -0.15 0.91 16
LS Contribution 347.95 15.07 5.24 5.24
Total: -1.00 -31.42 347.95 -10.20 -41.62
By element:
Atomic # 1 Polarization: 5.65 SS G_CDS: -6.22 Total: -0.57 kcal
Atomic # 6 Polarization: -1.97 SS G_CDS: -1.70 Total: -3.67 kcal
Atomic # 7 Polarization: -49.47 SS G_CDS: -0.44 Total: -49.91 kcal
Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -5.04 Total: 16.73 kcal
Atomic # 16 Polarization: 2.16 SS G_CDS: -2.13 Total: 0.03 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -31.42 -10.20 -41.62 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036620011.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.359 kcal
(2) G-P(sol) polarization free energy of solvation -31.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.734 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds