Wall clock time and date at job start Tue Mar 31 2020 12:14:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.37475 * 123.34969 * 2 1
4 4 C 1.33823 * 115.09657 * 179.97438 * 3 2 1
5 5 S 1.70615 * 110.95838 * 359.76374 * 4 3 2
6 6 C 1.36647 * 123.35542 * 179.97438 * 2 1 3
7 7 C 1.46588 * 125.45548 * 359.97438 * 6 2 1
8 8 O 1.21696 * 120.00159 * 321.49798 * 7 6 2
9 9 N 1.34770 * 119.99751 * 141.49478 * 7 6 2
10 10 C 1.46599 * 119.68585 * 174.70737 * 9 7 6
11 11 C 1.53951 * 110.58267 * 132.19352 * 10 9 7
12 12 C 1.51521 * 107.34057 * 51.05476 * 11 10 9
13 13 H 1.08994 * 108.81012 * 53.44324 * 12 11 10
14 14 C 1.55093 * 107.77053 * 295.29414 * 12 11 10
15 15 H 1.08998 * 111.34105 * 309.00402 * 14 12 11
16 16 C 1.53747 * 100.32368 * 191.11806 * 14 12 11
17 17 C 1.55289 * 101.84101 * 38.95113 * 16 14 12
18 18 N 1.45478 * 117.34529 * 178.09342 * 12 11 10
19 19 C 1.36931 * 126.40554 * 329.41605 * 18 12 11
20 20 H 1.07998 * 119.99884 * 6.71722 * 19 18 12
21 21 C 1.38812 * 119.99969 * 186.72306 * 19 18 12
22 22 N 1.31624 * 119.99889 * 25.99280 * 21 19 18
23 23 Si 1.86799 * 119.99820 * 205.99607 * 21 19 18
24 24 H 1.48498 * 109.46855 * 265.58935 * 23 21 19
25 25 H 1.48504 * 109.47200 * 145.59481 * 23 21 19
26 26 H 1.48492 * 109.47337 * 25.58922 * 23 21 19
27 27 C 1.47799 * 119.83722 * 355.05230 * 9 7 6
28 28 H 1.09008 * 109.46858 * 270.02141 * 1 2 3
29 29 H 1.09000 * 109.47393 * 30.01784 * 1 2 3
30 30 H 1.09001 * 109.47286 * 150.02266 * 1 2 3
31 31 H 1.07995 * 122.45220 * 359.97438 * 3 2 1
32 32 H 1.08005 * 124.51811 * 179.97438 * 4 3 2
33 33 H 1.09008 * 109.25175 * 11.90998 * 10 9 7
34 34 H 1.09004 * 109.25575 * 252.48224 * 10 9 7
35 35 H 1.08998 * 109.87965 * 291.59793 * 11 10 9
36 36 H 1.08993 * 109.88366 * 170.51233 * 11 10 9
37 37 H 1.09005 * 110.95430 * 280.81353 * 16 14 12
38 38 H 1.08998 * 110.95264 * 157.09202 * 16 14 12
39 39 H 1.08997 * 109.91821 * 218.17218 * 17 16 14
40 40 H 1.08993 * 110.08752 * 96.96145 * 17 16 14
41 41 H 0.97002 * 119.99371 * 180.02562 * 22 21 19
42 42 H 1.09000 * 110.64301 * 112.73460 * 27 9 7
43 43 H 1.08999 * 109.73229 * 351.01146 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2627 1.1484 0.0000
4 6 3.5871 0.9563 0.0005
5 16 3.9623 -0.7081 0.0077
6 6 2.2582 -1.1414 0.0005
7 6 1.7284 -2.5081 0.0017
8 8 0.7397 -2.7770 0.6583
9 7 2.3362 -3.4670 -0.7246
10 6 1.8724 -4.8544 -0.6282
11 6 1.6940 -5.4640 -2.0306
12 6 2.9765 -5.2145 -2.7980
13 1 3.8153 -5.5903 -2.2123
14 6 3.1300 -3.6816 -2.9775
15 1 2.2227 -3.2373 -3.3868
16 6 4.2818 -3.6374 -3.9950
17 6 3.9310 -4.8300 -4.9256
18 7 3.0598 -5.7440 -4.1504
19 6 2.4434 -6.8727 -4.6207
20 1 1.7388 -7.4028 -3.9971
21 6 2.7243 -7.3356 -5.8988
22 7 3.8816 -7.0563 -6.4603
23 14 1.4600 -8.3549 -6.8218
24 1 1.7365 -9.7982 -6.6083
25 1 1.5379 -8.0453 -8.2722
26 1 0.1008 -8.0315 -6.3189
27 6 3.4693 -3.1149 -1.6058
28 1 -0.3633 0.0004 1.0278
29 1 -0.3634 0.8898 -0.5141
30 1 -0.3634 -0.8902 -0.5135
31 1 1.8200 2.1334 -0.0004
32 1 4.3205 1.7491 0.0002
33 1 0.9183 -4.8787 -0.1017
34 1 2.6042 -5.4402 -0.0720
35 1 0.8581 -4.9844 -2.5397
36 1 1.5137 -6.5358 -1.9487
37 1 5.2420 -3.7954 -3.5039
38 1 4.2781 -2.6977 -4.5472
39 1 4.8419 -5.3490 -5.2235
40 1 3.4017 -4.4725 -5.8088
41 1 4.0777 -7.3795 -7.3536
42 1 4.3948 -3.5569 -1.2370
43 1 3.5680 -2.0309 -1.6630
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036620011.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:08
Heat of formation + Delta-G solvation = 12.555738 kcal
Electronic energy + Delta-G solvation = -25360.467805 eV
Core-core repulsion = 21918.274929 eV
Total energy + Delta-G solvation = -3442.192875 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.60112 -40.01010 -38.69365 -36.74780 -34.45079 -33.56874 -31.86577 -31.43281
-29.83761 -28.98223 -26.70542 -25.24023 -24.44910 -23.73533 -22.11298 -21.62350
-20.96878 -19.29453 -19.07254 -18.41915 -17.28891 -16.94242 -16.78443 -16.28165
-16.08919 -15.89277 -15.69687 -14.99301 -14.81485 -14.61643 -14.37935 -14.23278
-13.95268 -13.75803 -13.71355 -13.25116 -13.11643 -13.00714 -12.87760 -12.84239
-12.63010 -12.44569 -12.16743 -12.09889 -11.93986 -11.74644 -11.64620 -11.45185
-11.22340 -10.96147 -10.59856 -9.90803 -9.62476 -9.23684 -8.88465 -7.90657
-5.16447 -0.38406 0.47189 0.99516 1.43162 1.45986 1.46575 1.55951
1.77856 2.09947 2.50182 3.23224 3.40444 3.43746 3.76285 3.94875
3.97532 4.01118 4.14698 4.22058 4.28033 4.33320 4.41944 4.45783
4.54993 4.61979 4.64881 4.73735 4.75577 4.81583 4.86741 4.97741
5.03406 5.07010 5.08911 5.15961 5.36979 5.42991 5.46308 5.50721
5.54046 5.64147 5.71270 6.18113 6.24159 6.98994 7.04421 7.78588
8.47614 9.19983
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.022012 B = 0.003548 C = 0.003320
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1271.738687 B = 7889.166457 C = 8432.216580
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C -0.035 4.035
3 C -0.156 4.156
4 C -0.225 4.225
5 S 0.239 5.761
6 C -0.310 4.310
7 C 0.588 3.412
8 O -0.568 6.568
9 N -0.604 5.604
10 C 0.126 3.874
11 C -0.119 4.119
12 C 0.156 3.844
13 H 0.021 0.979
14 C -0.107 4.107
15 H 0.066 0.934
16 C -0.112 4.112
17 C 0.163 3.837
18 N -0.610 5.610
19 C -0.242 4.242
20 H 0.079 0.921
21 C -0.056 4.056
22 N -0.932 5.932
23 Si 0.955 3.045
24 H -0.286 1.286
25 H -0.294 1.294
26 H -0.275 1.275
27 C 0.118 3.882
28 H 0.078 0.922
29 H 0.091 0.909
30 H 0.046 0.954
31 H 0.168 0.832
32 H 0.200 0.800
33 H 0.086 0.914
34 H 0.081 0.919
35 H 0.050 0.950
36 H 0.070 0.930
37 H 0.085 0.915
38 H 0.088 0.912
39 H 0.027 0.973
40 H -0.004 1.004
41 H 0.248 0.752
42 H 0.096 0.904
43 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.618 18.880 14.197 23.678
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.051 4.051
3 C -0.186 4.186
4 C -0.363 4.363
5 S 0.508 5.492
6 C -0.430 4.430
7 C 0.377 3.623
8 O -0.450 6.450
9 N -0.335 5.335
10 C 0.003 3.997
11 C -0.158 4.158
12 C 0.049 3.951
13 H 0.038 0.962
14 C -0.128 4.128
15 H 0.085 0.915
16 C -0.150 4.150
17 C 0.038 3.962
18 N -0.334 5.334
19 C -0.371 4.371
20 H 0.097 0.903
21 C -0.251 4.251
22 N -0.579 5.579
23 Si 0.784 3.216
24 H -0.213 1.213
25 H -0.220 1.220
26 H -0.200 1.200
27 C -0.005 4.005
28 H 0.096 0.904
29 H 0.110 0.890
30 H 0.065 0.935
31 H 0.185 0.815
32 H 0.217 0.783
33 H 0.105 0.895
34 H 0.099 0.901
35 H 0.069 0.931
36 H 0.088 0.912
37 H 0.104 0.896
38 H 0.107 0.893
39 H 0.045 0.955
40 H 0.014 0.986
41 H 0.057 0.943
42 H 0.114 0.886
43 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 2.526 17.759 14.377 22.989
hybrid contribution -1.975 -0.300 -1.108 2.285
sum 0.550 17.459 13.269 21.936
Atomic orbital electron populations
1.20535 0.89077 1.02757 1.02958 1.19737 0.97974 0.91104 0.96297
1.20068 0.92789 0.99730 1.06023 1.25817 1.01116 1.02690 1.06634
1.83120 1.01054 0.98075 1.66931 1.24336 0.99880 0.96335 1.22447
1.17382 0.82332 0.83851 0.78777 1.90760 1.26934 1.82320 1.44943
1.48225 1.33950 1.08033 1.43327 1.21535 1.01340 0.80430 0.96387
1.21756 0.98202 1.00808 0.95081 1.20791 0.95366 0.92519 0.86398
0.96182 1.22410 0.99143 0.96263 0.94956 0.91517 1.22511 0.97843
0.98093 0.96598 1.21439 0.93339 0.89121 0.92322 1.44477 1.56605
1.25159 1.07128 1.19196 1.17089 1.02588 0.98233 0.90335 1.25379
0.98208 1.02018 0.99497 1.70241 1.20831 1.51178 1.15646 0.85432
0.80033 0.78239 0.77936 1.21297 1.22033 1.20026 1.22158 0.88579
1.02085 0.87661 0.90382 0.88986 0.93477 0.81500 0.78258 0.89550
0.90077 0.93110 0.91190 0.89597 0.89324 0.95503 0.98579 0.94328
0.88606 0.87582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.97 9.45 71.23 0.67 -1.29 16
2 C -0.04 -0.76 5.90 -20.42 -0.12 -0.88 16
3 C -0.16 -2.37 9.97 21.09 0.21 -2.16 16
4 C -0.23 -2.89 10.92 66.82 0.73 -2.16 16
5 S 0.24 3.94 19.82 -56.49 -1.12 2.82 16
6 C -0.31 -7.52 5.44 24.08 0.13 -7.39 16
7 C 0.59 17.75 7.10 86.42 0.61 18.36 16
8 O -0.57 -20.52 15.14 -4.34 -0.07 -20.59 16
9 N -0.60 -17.30 2.99 -822.62 -2.46 -19.76 16
10 C 0.13 3.77 6.34 86.68 0.55 4.32 16
11 C -0.12 -4.26 5.45 30.43 0.17 -4.10 16
12 C 0.16 6.13 2.57 45.42 0.12 6.25 16
13 H 0.02 0.82 7.91 -2.39 -0.02 0.80 16
14 C -0.11 -3.45 2.84 -10.08 -0.03 -3.48 16
15 H 0.07 2.37 8.11 -2.39 -0.02 2.35 16
16 C -0.11 -3.65 6.54 31.63 0.21 -3.45 16
17 C 0.16 7.68 5.70 86.85 0.50 8.17 16
18 N -0.61 -30.54 3.35 -670.44 -2.25 -32.79 16
19 C -0.24 -13.48 9.76 84.03 0.82 -12.66 16
20 H 0.08 4.24 7.29 -2.91 -0.02 4.22 16
21 C -0.06 -3.20 5.26 84.86 0.45 -2.75 16
22 N -0.93 -55.80 11.35 21.65 0.25 -55.56 16
23 Si 0.95 45.90 29.63 68.60 2.03 47.93 16
24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16
25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16
26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16
27 C 0.12 2.95 5.05 85.88 0.43 3.38 16
28 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16
29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
30 H 0.05 1.22 7.19 -2.39 -0.02 1.20 16
31 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16
32 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16
33 H 0.09 2.69 6.92 -2.38 -0.02 2.67 16
34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16
35 H 0.05 1.95 8.11 -2.39 -0.02 1.94 16
36 H 0.07 2.58 7.63 -2.39 -0.02 2.56 16
37 H 0.09 2.45 8.12 -2.38 -0.02 2.43 16
38 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16
39 H 0.03 1.44 7.13 -2.39 -0.02 1.42 16
40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16
41 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16
42 H 0.10 2.10 8.08 -2.39 -0.02 2.08 16
43 H 0.11 2.27 4.44 -13.83 -0.06 2.21 16
Total: -1.00 -71.29 347.95 2.78 -68.51
By element:
Atomic # 1 Polarization: 8.31 SS G_CDS: 0.96 Total: 9.27 kcal
Atomic # 6 Polarization: -5.28 SS G_CDS: 5.44 Total: 0.17 kcal
Atomic # 7 Polarization: -103.64 SS G_CDS: -4.46 Total: -108.11 kcal
Atomic # 8 Polarization: -20.52 SS G_CDS: -0.07 Total: -20.59 kcal
Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal
Atomic # 16 Polarization: 3.94 SS G_CDS: -1.12 Total: 2.82 kcal
Total: -71.29 2.78 -68.51 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036620011.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.061 kcal
(2) G-P(sol) polarization free energy of solvation -71.290 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.771 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.556 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds