Wall clock time and date at job start Tue Mar 31 2020 12:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37471 * 123.34803 * 2 1 4 4 C 1.33816 * 115.10211 * 179.97438 * 3 2 1 5 5 S 1.70619 * 110.95299 * 359.72090 * 4 3 2 6 6 C 1.36644 * 123.35611 * 179.97438 * 2 1 3 7 7 C 1.46581 * 125.45536 * 0.02562 * 6 2 1 8 8 O 1.21706 * 120.00284 * 318.58989 * 7 6 2 9 9 N 1.34773 * 119.99753 * 138.59047 * 7 6 2 10 10 C 1.46531 * 120.97847 * 354.37257 * 9 7 6 11 11 C 1.51780 * 110.13504 * 233.74969 * 10 9 7 12 12 C 1.49516 * 115.06785 * 318.38196 * 11 10 9 13 13 H 1.09002 * 105.92649 * 157.46379 * 12 11 10 14 14 C 1.52676 * 116.96746 * 40.06274 * 12 11 10 15 15 H 1.09003 * 112.03484 * 83.76475 * 14 12 11 16 16 C 1.56119 * 101.71301 * 203.76796 * 14 12 11 17 17 C 1.55094 * 101.12037 * 37.83421 * 16 14 12 18 18 N 1.46252 * 113.51987 * 272.75777 * 12 11 10 19 19 C 1.36941 * 125.96337 * 315.01815 * 18 12 11 20 20 H 1.08001 * 119.99956 * 0.02562 * 19 18 12 21 21 C 1.38810 * 120.00257 * 179.97438 * 19 18 12 22 22 N 1.31615 * 119.99764 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99970 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47365 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47276 * 120.00115 * 23 21 19 26 26 H 1.48506 * 109.46993 * 240.00226 * 23 21 19 27 27 C 1.45044 * 120.59082 * 174.93534 * 9 7 6 28 28 H 1.09002 * 109.47107 * 270.02138 * 1 2 3 29 29 H 1.08999 * 109.47777 * 30.02039 * 1 2 3 30 30 H 1.09000 * 109.46779 * 150.02811 * 1 2 3 31 31 H 1.07999 * 122.45029 * 359.95866 * 3 2 1 32 32 H 1.08000 * 124.52431 * 180.02562 * 4 3 2 33 33 H 1.08990 * 109.36357 * 113.54212 * 10 9 7 34 34 H 1.09008 * 109.35596 * 353.94785 * 10 9 7 35 35 H 1.08995 * 108.36842 * 196.93036 * 11 10 9 36 36 H 1.09005 * 108.22675 * 79.72536 * 11 10 9 37 37 H 1.08998 * 111.09649 * 155.80672 * 16 14 12 38 38 H 1.08999 * 111.09514 * 279.86080 * 16 14 12 39 39 H 1.08998 * 110.35188 * 81.81599 * 17 16 14 40 40 H 1.08997 * 110.35151 * 204.09948 * 17 16 14 41 41 H 0.97002 * 120.00046 * 179.97438 * 22 21 19 42 42 H 1.08994 * 110.03033 * 0.95627 * 27 9 7 43 43 H 1.09008 * 108.13918 * 241.28990 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1484 0.0000 4 6 3.5870 0.9564 0.0005 5 16 3.9623 -0.7079 0.0089 6 6 2.2583 -1.1413 0.0005 7 6 1.7285 -2.5081 0.0006 8 8 0.7712 -2.7897 0.6974 9 7 2.3015 -3.4529 -0.7710 10 6 3.3748 -3.1122 -1.7086 11 6 3.0251 -3.5998 -3.1027 12 6 2.4053 -4.9591 -3.1615 13 1 1.8580 -4.9979 -4.1033 14 6 1.3859 -5.3027 -2.0780 15 1 0.3896 -4.9342 -2.3222 16 6 1.4510 -6.8625 -2.0648 17 6 2.9674 -7.1005 -2.2864 18 7 3.3835 -6.0440 -3.2330 19 6 4.4909 -6.0765 -4.0378 20 1 4.7038 -5.2481 -4.6971 21 6 5.3406 -7.1738 -4.0053 22 7 5.0814 -8.1831 -3.2014 23 14 6.8516 -7.2177 -5.1026 24 1 6.9168 -5.9703 -5.9056 25 1 8.0708 -7.3290 -4.2621 26 1 6.7689 -8.3887 -6.0122 27 6 1.8589 -4.8323 -0.6998 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8903 -0.5134 31 1 1.8199 2.1334 -0.0007 32 1 4.3204 1.7492 0.0010 33 1 4.3021 -3.5833 -1.3830 34 1 3.5085 -2.0305 -1.7271 35 1 3.9361 -3.6116 -3.7010 36 1 2.3320 -2.8868 -3.5495 37 1 1.1278 -7.2605 -1.1029 38 1 0.8640 -7.2865 -2.8795 39 1 3.5084 -7.0003 -1.3455 40 1 3.1371 -8.0865 -2.7191 41 1 5.6749 -8.9501 -3.1789 42 1 1.0432 -4.9262 0.0170 43 1 2.7019 -5.4429 -0.3761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036620013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:14 Heat of formation + Delta-G solvation = 15.329682 kcal Electronic energy + Delta-G solvation = -25614.604263 eV Core-core repulsion = 22172.531675 eV Total energy + Delta-G solvation = -3442.072588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67933 -40.01984 -38.67532 -36.71952 -34.65187 -33.42941 -31.99223 -31.22425 -29.88794 -28.79267 -26.86370 -25.75428 -24.31027 -24.12941 -22.14335 -21.85922 -20.18968 -19.29065 -19.08794 -18.15826 -17.43865 -17.15007 -16.85120 -16.32724 -16.20959 -15.75608 -15.60434 -14.94409 -14.85816 -14.61069 -14.36473 -14.14777 -13.91583 -13.81894 -13.43410 -13.24226 -13.14183 -13.04315 -12.88855 -12.77361 -12.54746 -12.48586 -12.18209 -11.93273 -11.84344 -11.66229 -11.60795 -11.41577 -11.29265 -11.07429 -10.67783 -9.85108 -9.58811 -9.32038 -8.79331 -7.74479 -5.14715 -0.39082 0.43358 0.98284 1.45151 1.48964 1.49517 1.59114 1.81949 2.10900 2.52142 3.36690 3.43831 3.65459 3.74910 3.83156 3.97987 3.99612 4.10140 4.19818 4.27134 4.35918 4.41655 4.47401 4.57963 4.64309 4.72128 4.75818 4.77507 4.86929 4.91598 5.01687 5.06306 5.06951 5.13782 5.28693 5.38184 5.41089 5.46705 5.49692 5.55307 5.67744 5.85429 6.31553 6.32967 6.98276 7.14933 7.83685 8.50107 9.30502 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018016 B = 0.004089 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.842610 B = 6846.552183 C = 7868.711067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.032 4.032 3 C -0.152 4.152 4 C -0.223 4.223 5 S 0.212 5.788 6 C -0.306 4.306 7 C 0.590 3.410 8 O -0.565 6.565 9 N -0.595 5.595 10 C 0.116 3.884 11 C -0.130 4.130 12 C 0.167 3.833 13 H 0.001 0.999 14 C -0.095 4.095 15 H 0.097 0.903 16 C -0.129 4.129 17 C 0.161 3.839 18 N -0.610 5.610 19 C -0.224 4.224 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.972 3.028 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.297 1.297 27 C 0.127 3.873 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.173 0.827 32 H 0.200 0.800 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.067 0.933 39 H -0.009 1.009 40 H 0.063 0.937 41 H 0.244 0.756 42 H 0.091 0.909 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 19.330 5.656 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.048 4.048 3 C -0.182 4.182 4 C -0.360 4.360 5 S 0.481 5.519 6 C -0.425 4.425 7 C 0.379 3.621 8 O -0.446 6.446 9 N -0.326 5.326 10 C -0.007 4.007 11 C -0.169 4.169 12 C 0.060 3.940 13 H 0.019 0.981 14 C -0.115 4.115 15 H 0.116 0.884 16 C -0.167 4.167 17 C 0.036 3.964 18 N -0.335 5.335 19 C -0.353 4.353 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.802 3.198 24 H -0.189 1.189 25 H -0.223 1.223 26 H -0.224 1.224 27 C 0.004 3.996 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.190 0.810 32 H 0.217 0.783 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.009 0.991 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.497 18.250 5.957 19.717 hybrid contribution -0.168 0.071 -0.578 0.606 sum -4.665 18.321 5.379 19.656 Atomic orbital electron populations 1.20549 0.88541 1.03052 1.03083 1.19768 0.98188 0.90741 0.96082 1.20105 0.92555 0.99893 1.05645 1.25766 1.01309 1.01987 1.06923 1.83448 1.02054 0.98913 1.67515 1.24296 0.99297 0.96493 1.22451 1.17326 0.81934 0.83725 0.79127 1.90755 1.28357 1.81645 1.43873 1.47471 1.37183 1.08477 1.39428 1.21532 0.88914 1.01484 0.88760 1.21134 1.02256 0.97032 0.96504 1.19655 0.89873 0.88431 0.96003 0.98086 1.22263 0.98431 0.96643 0.94115 0.88443 1.23151 0.97548 0.94197 1.01850 1.21674 0.89797 0.94109 0.90781 1.44746 1.26681 1.16381 1.45712 1.19374 0.99204 1.02249 1.14444 0.89738 1.25514 1.02012 0.96907 1.01367 1.70096 1.39008 1.08669 1.42191 0.85089 0.79256 0.77533 0.77967 1.18863 1.22318 1.22404 1.21236 1.00106 0.80774 0.97467 0.90371 0.88616 0.93158 0.81014 0.78290 0.92390 0.87936 0.90874 0.91020 0.89732 0.91420 0.99130 0.91920 0.94631 0.89056 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 9.49 71.23 0.68 -1.21 16 2 C -0.03 -0.71 5.90 -20.42 -0.12 -0.83 16 3 C -0.15 -2.45 9.97 21.08 0.21 -2.24 16 4 C -0.22 -3.35 10.92 66.81 0.73 -2.62 16 5 S 0.21 4.40 20.15 -56.49 -1.14 3.26 16 6 C -0.31 -8.14 5.37 24.07 0.13 -8.01 16 7 C 0.59 19.34 7.05 86.42 0.61 19.95 16 8 O -0.57 -21.30 15.39 -4.37 -0.07 -21.36 16 9 N -0.60 -19.60 2.93 -832.30 -2.44 -22.04 16 10 C 0.12 3.64 5.72 85.97 0.49 4.13 16 11 C -0.13 -4.42 5.59 29.08 0.16 -4.26 16 12 C 0.17 6.64 2.66 43.82 0.12 6.76 16 13 H 0.00 0.06 8.08 -2.39 -0.02 0.04 16 14 C -0.09 -3.31 3.72 -9.78 -0.04 -3.35 16 15 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 16 C -0.13 -4.77 6.46 32.39 0.21 -4.56 16 17 C 0.16 7.79 5.35 86.84 0.46 8.25 16 18 N -0.61 -29.90 3.30 -678.01 -2.24 -32.14 16 19 C -0.22 -11.91 9.57 84.03 0.80 -11.11 16 20 H 0.08 4.28 7.01 -2.91 -0.02 4.26 16 21 C -0.07 -3.61 5.49 84.86 0.47 -3.15 16 22 N -0.95 -55.73 10.18 21.65 0.22 -55.50 16 23 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 27 C 0.13 4.41 5.42 86.69 0.47 4.88 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.24 7.27 -2.39 -0.02 1.22 16 31 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 2.71 4.56 -10.67 -0.05 2.66 16 35 H 0.07 2.68 6.59 -2.39 -0.02 2.66 16 36 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.08 2.74 7.98 -2.39 -0.02 2.72 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H -0.01 -0.48 7.10 -2.39 -0.02 -0.50 16 40 H 0.06 3.48 6.10 -2.39 -0.01 3.47 16 41 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.09 3.10 6.97 -2.39 -0.02 3.09 16 43 H 0.06 2.19 6.49 -2.38 -0.02 2.17 16 Total: -1.00 -67.06 342.95 2.73 -64.33 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.98 Total: 14.11 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.38 Total: 2.64 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -4.46 Total: -109.69 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.07 Total: -21.36 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.14 Total: 3.26 kcal Total: -67.06 2.73 -64.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036620013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.661 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds