Wall clock time and date at job start Tue Mar 31 2020 12:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32771 * 123.45878 * 2 1 4 4 S 1.75499 * 110.57787 * 180.02562 * 3 2 1 5 5 C 1.70448 * 92.44352 * 359.80478 * 4 3 2 6 6 C 1.36002 * 110.81992 * 0.34594 * 5 4 3 7 7 C 1.47192 * 123.46321 * 179.86056 * 6 5 4 8 8 O 1.21637 * 119.99691 * 131.15361 * 7 6 5 9 9 N 1.34776 * 119.99744 * 311.14693 * 7 6 5 10 10 C 1.47138 * 121.01203 * 354.39250 * 9 7 6 11 11 C 1.53050 * 107.68364 * 237.45712 * 10 9 7 12 12 C 1.51142 * 111.10537 * 305.59096 * 11 10 9 13 13 H 1.09002 * 108.46294 * 175.38652 * 12 11 10 14 14 C 1.54000 * 113.17080 * 55.13821 * 12 11 10 15 15 H 1.09001 * 112.71985 * 75.18369 * 14 12 11 16 16 C 1.56018 * 100.38393 * 196.33585 * 14 12 11 17 17 C 1.54499 * 102.61893 * 36.86734 * 16 14 12 18 18 N 1.46467 * 113.22736 * 295.67646 * 12 11 10 19 19 C 1.36938 * 126.05539 * 330.50089 * 18 12 11 20 20 H 1.07995 * 119.99959 * 0.02562 * 19 18 12 21 21 C 1.38808 * 119.99629 * 180.02562 * 19 18 12 22 22 N 1.31622 * 120.00494 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99713 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47087 * 89.99870 * 23 21 19 25 25 H 1.48500 * 109.47288 * 209.99846 * 23 21 19 26 26 H 1.48500 * 109.47055 * 329.99853 * 23 21 19 27 27 C 1.46523 * 121.00688 * 174.41261 * 9 7 6 28 28 H 1.09009 * 109.46783 * 269.97367 * 1 2 3 29 29 H 1.08997 * 109.47261 * 29.97090 * 1 2 3 30 30 H 1.08999 * 109.47202 * 149.98132 * 1 2 3 31 31 H 1.08006 * 124.70699 * 0.02562 * 3 2 1 32 32 H 1.08003 * 124.58793 * 180.22219 * 5 4 3 33 33 H 1.09000 * 109.81557 * 356.99557 * 10 9 7 34 34 H 1.09000 * 109.82094 * 117.91115 * 10 9 7 35 35 H 1.09000 * 109.14932 * 66.00383 * 11 10 9 36 36 H 1.08995 * 109.15247 * 185.17434 * 11 10 9 37 37 H 1.09007 * 110.77890 * 155.14973 * 16 14 12 38 38 H 1.08996 * 110.77840 * 278.39249 * 16 14 12 39 39 H 1.09005 * 109.90117 * 96.54759 * 17 16 14 40 40 H 1.09000 * 109.89962 * 217.78112 * 17 16 14 41 41 H 0.97003 * 119.99987 * 179.97438 * 22 21 19 42 42 H 1.09003 * 109.34619 * 244.60874 * 27 9 7 43 43 H 1.09005 * 109.34700 * 4.15518 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7165 -0.0007 5 6 3.6410 -0.9598 0.0048 6 6 2.3033 -1.2049 -0.0006 7 6 1.7263 -2.5590 -0.0008 8 8 0.8467 -2.8453 0.7891 9 7 2.1725 -3.4816 -0.8761 10 6 3.1465 -3.1270 -1.9205 11 6 2.5238 -3.4755 -3.2745 12 6 2.0769 -4.9188 -3.3126 13 1 1.5682 -5.0978 -4.2600 14 6 1.1134 -5.2853 -2.1685 15 1 0.1074 -4.8956 -2.3242 16 6 1.1941 -6.8425 -2.2209 17 6 2.6794 -7.0922 -2.5651 18 7 3.1849 -5.8699 -3.1975 19 6 4.4717 -5.6628 -3.6176 20 1 4.7439 -4.7269 -4.0826 21 6 5.4261 -6.6559 -3.4456 22 7 5.0942 -7.7968 -2.8792 23 14 7.1813 -6.3738 -4.0192 24 1 7.9714 -5.7695 -2.9166 25 1 7.7890 -7.6712 -4.4101 26 1 7.1790 -5.4565 -5.1870 27 6 1.7021 -4.8680 -0.8169 28 1 -0.3633 -0.0005 1.0278 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.8373 2.1103 0.0004 32 1 4.4044 -1.7238 0.0097 33 1 3.3627 -2.0596 -1.8770 34 1 4.0647 -3.6969 -1.7784 35 1 1.6631 -2.8300 -3.4490 36 1 3.2603 -3.3084 -4.0604 37 1 0.9435 -7.2755 -1.2524 38 1 0.5419 -7.2375 -2.9997 39 1 3.2436 -7.2891 -1.6534 40 1 2.7650 -7.9380 -3.2473 41 1 5.7611 -8.4909 -2.7593 42 1 2.5378 -5.5226 -0.5694 43 1 0.9362 -4.9569 -0.0465 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036679103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:04 Heat of formation + Delta-G solvation = 10.708864 kcal Electronic energy + Delta-G solvation = -25890.070129 eV Core-core repulsion = 22447.797168 eV Total energy + Delta-G solvation = -3442.272962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.67412 -40.02432 -38.11589 -36.54649 -34.62938 -33.20820 -32.29072 -30.98772 -29.35337 -28.50319 -27.06729 -26.03313 -24.43836 -23.97144 -21.91499 -21.61493 -20.22262 -19.23800 -18.63142 -18.25855 -17.80516 -17.03702 -16.80841 -16.37861 -16.04151 -15.68960 -15.36082 -14.94456 -14.67247 -14.47735 -14.19343 -14.06191 -13.94628 -13.91953 -13.37048 -13.22029 -13.14971 -12.97452 -12.81367 -12.77727 -12.61378 -12.49918 -12.26656 -11.98766 -11.89902 -11.66367 -11.53541 -11.47590 -11.21401 -10.91204 -10.62238 -9.81384 -9.63440 -9.20484 -8.79922 -7.77672 -5.11448 -0.12424 0.65240 0.94442 1.12290 1.48062 1.49023 1.57067 1.82867 2.16674 2.53104 3.40931 3.53149 3.64623 3.76211 3.83831 3.95069 4.05293 4.20915 4.23927 4.25380 4.39372 4.44854 4.55732 4.57829 4.63269 4.75733 4.76573 4.80435 4.83048 4.86517 4.94668 4.98316 5.09391 5.22196 5.24095 5.30994 5.37549 5.47388 5.53034 5.59207 5.70433 5.82458 6.25977 6.42793 7.07906 7.16994 7.86374 8.51866 9.32973 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.004591 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.715111 B = 6097.395420 C = 7393.026280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.082 4.082 3 C -0.231 4.231 4 S 0.235 5.765 5 C -0.224 4.224 6 C -0.166 4.166 7 C 0.576 3.424 8 O -0.577 6.577 9 N -0.594 5.594 10 C 0.119 3.881 11 C -0.122 4.122 12 C 0.163 3.837 13 H 0.018 0.982 14 C -0.102 4.102 15 H 0.103 0.897 16 C -0.130 4.130 17 C 0.187 3.813 18 N -0.607 5.607 19 C -0.219 4.219 20 H 0.089 0.911 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.966 3.034 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.267 1.267 27 C 0.133 3.867 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.199 0.801 32 H 0.169 0.831 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.013 0.987 40 H 0.003 0.997 41 H 0.242 0.758 42 H 0.050 0.950 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 18.960 3.706 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.366 4.366 4 S 0.502 5.498 5 C -0.362 4.362 6 C -0.185 4.185 7 C 0.364 3.636 8 O -0.459 6.459 9 N -0.324 5.324 10 C -0.003 4.003 11 C -0.161 4.161 12 C 0.057 3.943 13 H 0.035 0.965 14 C -0.122 4.122 15 H 0.121 0.879 16 C -0.168 4.168 17 C 0.062 3.938 18 N -0.332 5.332 19 C -0.348 4.348 20 H 0.107 0.893 21 C -0.259 4.259 22 N -0.603 5.603 23 Si 0.796 3.204 24 H -0.216 1.216 25 H -0.230 1.230 26 H -0.191 1.191 27 C 0.011 3.989 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.216 0.784 32 H 0.186 0.814 33 H 0.119 0.881 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.031 0.969 40 H 0.021 0.979 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.281 19.591 4.083 20.697 hybrid contribution 0.030 -2.007 -0.269 2.025 sum -5.251 17.584 3.814 18.744 Atomic orbital electron populations 1.20436 0.88618 1.02842 1.02700 1.19903 0.97745 0.89874 1.01796 1.25646 0.96698 1.03153 1.11122 1.82804 1.04708 0.94053 1.68188 1.25798 0.98968 1.04716 1.06701 1.20097 0.93352 0.93457 1.11552 1.18088 0.81168 0.84483 0.79823 1.90723 1.32530 1.81230 1.41412 1.48007 1.43463 1.09544 1.31385 1.21836 0.91086 1.01242 0.86138 1.21519 1.01300 0.96136 0.97118 1.20479 0.88457 0.90116 0.95286 0.96496 1.22696 0.99011 0.96033 0.94447 0.87925 1.23019 0.97107 0.94913 1.01804 1.20813 0.89871 0.88242 0.94894 1.44364 1.05659 1.12774 1.70390 1.19342 0.84619 0.99934 1.30876 0.89296 1.25514 1.01602 0.96449 1.02364 1.70193 1.33148 1.06468 1.50477 0.85243 0.80751 0.76297 0.78095 1.21618 1.23036 1.19137 1.21379 0.98806 0.81003 0.97753 0.91070 0.88759 0.93387 0.78429 0.81358 0.88078 0.92113 0.90346 0.90815 0.90497 0.90764 0.96891 0.97929 0.94895 0.93157 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.63 71.24 0.69 -1.11 16 2 C -0.08 -1.86 6.00 -19.46 -0.12 -1.97 16 3 C -0.23 -3.79 10.91 66.64 0.73 -3.07 16 4 S 0.23 3.79 23.02 -56.49 -1.30 2.49 16 5 C -0.22 -5.20 8.53 67.30 0.57 -4.62 16 6 C -0.17 -4.56 4.92 -19.87 -0.10 -4.66 16 7 C 0.58 19.63 6.82 86.60 0.59 20.22 16 8 O -0.58 -22.89 15.92 -4.15 -0.07 -22.95 16 9 N -0.59 -20.23 2.93 -823.74 -2.42 -22.65 16 10 C 0.12 3.83 5.57 86.27 0.48 4.31 16 11 C -0.12 -3.95 5.18 30.01 0.16 -3.79 16 12 C 0.16 6.22 2.89 44.73 0.13 6.35 16 13 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 14 C -0.10 -3.49 3.86 -9.34 -0.04 -3.52 16 15 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 16 C -0.13 -4.73 6.29 32.15 0.20 -4.52 16 17 C 0.19 9.03 4.61 86.87 0.40 9.43 16 18 N -0.61 -28.87 3.04 -676.40 -2.06 -30.92 16 19 C -0.22 -11.28 8.93 84.03 0.75 -10.53 16 20 H 0.09 4.29 6.71 -2.91 -0.02 4.27 16 21 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 22 N -0.95 -56.24 10.31 21.65 0.22 -56.02 16 23 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 C 0.13 4.85 5.44 86.45 0.47 5.32 16 28 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.09 1.34 8.13 -2.39 -0.02 1.32 16 30 H 0.05 1.19 7.53 -2.39 -0.02 1.17 16 31 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.17 3.93 7.70 -2.91 -0.02 3.91 16 33 H 0.10 2.73 5.09 -2.39 -0.01 2.72 16 34 H 0.06 2.31 7.39 -2.39 -0.02 2.30 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.42 7.05 -2.39 -0.02 2.41 16 37 H 0.08 2.56 7.97 -2.38 -0.02 2.54 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.01 0.71 6.90 -2.38 -0.02 0.69 16 40 H 0.00 0.14 7.59 -2.39 -0.02 0.12 16 41 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.05 2.12 6.79 -2.39 -0.02 2.11 16 43 H 0.08 2.91 6.99 -2.38 -0.02 2.89 16 Total: -1.00 -67.13 344.11 2.81 -64.33 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.02 Total: 14.72 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.38 Total: 4.64 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -4.25 Total: -109.59 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.07 Total: -22.95 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.30 Total: 2.49 kcal Total: -67.13 2.81 -64.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036679103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.035 kcal (2) G-P(sol) polarization free energy of solvation -67.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds