Wall clock time and date at job start Tue Mar 31 2020 12:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32770 * 123.45831 * 2 1 4 4 S 1.75506 * 110.57271 * 179.97438 * 3 2 1 5 5 C 1.70444 * 92.44738 * 359.81964 * 4 3 2 6 6 C 1.36009 * 110.81452 * 0.32127 * 5 4 3 7 7 C 1.47190 * 123.45864 * 179.88801 * 6 5 4 8 8 O 1.21638 * 120.00040 * 209.43744 * 7 6 5 9 9 N 1.34780 * 120.00073 * 29.44460 * 7 6 5 10 10 C 1.46820 * 120.30317 * 174.36049 * 9 7 6 11 11 C 1.52971 * 107.39072 * 235.03655 * 10 9 7 12 12 C 1.53544 * 109.95844 * 298.40908 * 11 10 9 13 13 H 1.09000 * 110.98215 * 289.23899 * 12 11 10 14 14 C 1.51776 * 112.12238 * 53.07480 * 12 11 10 15 15 H 1.08996 * 104.99247 * 206.70538 * 14 12 11 16 16 C 1.53380 * 105.83593 * 95.17833 * 14 12 11 17 17 C 1.54464 * 102.53975 * 29.49361 * 16 14 12 18 18 N 1.46867 * 106.65697 * 332.25903 * 17 16 14 19 19 C 1.36932 * 125.33651 * 195.40625 * 18 17 16 20 20 H 1.08003 * 119.99910 * 170.35235 * 19 18 17 21 21 C 1.38809 * 120.00385 * 350.35232 * 19 18 17 22 22 N 1.31622 * 119.99628 * 4.06499 * 21 19 18 23 23 Si 1.86797 * 120.00164 * 184.06362 * 21 19 18 24 24 H 1.48499 * 109.46960 * 94.99540 * 23 21 19 25 25 H 1.48507 * 109.47180 * 214.99246 * 23 21 19 26 26 H 1.48491 * 109.47362 * 334.99589 * 23 21 19 27 27 C 1.45653 * 120.30247 * 354.38545 * 9 7 6 28 28 H 1.09006 * 109.46874 * 270.02577 * 1 2 3 29 29 H 1.08997 * 109.46948 * 30.01610 * 1 2 3 30 30 H 1.09000 * 109.47417 * 150.02157 * 1 2 3 31 31 H 1.08002 * 124.71126 * 359.95040 * 3 2 1 32 32 H 1.07993 * 124.59650 * 180.20487 * 5 4 3 33 33 H 1.09001 * 109.87749 * 354.50892 * 10 9 7 34 34 H 1.09000 * 109.87230 * 115.49863 * 10 9 7 35 35 H 1.09002 * 109.38323 * 58.68880 * 11 10 9 36 36 H 1.08999 * 109.38112 * 178.47048 * 11 10 9 37 37 H 1.09004 * 110.79308 * 271.22657 * 16 14 12 38 38 H 1.09006 * 110.79267 * 147.75828 * 16 14 12 39 39 H 1.08996 * 110.02291 * 212.95902 * 17 16 14 40 40 H 1.09000 * 110.02154 * 91.55743 * 17 16 14 41 41 H 0.97000 * 119.99687 * 179.97438 * 22 21 19 42 42 H 1.09003 * 108.44155 * 22.15822 * 27 9 7 43 43 H 1.09005 * 108.30685 * 264.75570 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7163 0.0007 5 6 3.6411 -0.9599 0.0064 6 6 2.3032 -1.2049 0.0005 7 6 1.7262 -2.5590 0.0010 8 8 0.6463 -2.7601 -0.5215 9 7 2.3943 -3.5761 0.5805 10 6 1.7726 -4.9012 0.6944 11 6 1.8097 -5.2982 2.1713 12 6 3.2647 -5.3869 2.6537 13 1 3.7676 -6.2514 2.2202 14 6 4.0444 -4.1196 2.3544 15 1 5.0831 -4.4400 2.2739 16 6 3.9697 -3.2712 3.6300 17 6 3.8545 -4.3411 4.7381 18 7 3.2118 -5.5120 4.1275 19 6 2.6560 -6.5583 4.8141 20 1 2.0696 -7.2980 4.2892 21 6 2.8461 -6.6684 6.1847 22 7 3.4924 -5.7255 6.8372 23 14 2.1847 -8.1544 7.1031 24 1 3.2561 -9.1749 7.2301 25 1 1.7332 -7.7398 8.4557 26 1 1.0393 -8.7300 6.3537 27 6 3.7394 -3.3704 1.0998 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.8374 2.1102 -0.0008 32 1 4.4042 -1.7240 0.0119 33 1 0.7398 -4.8571 0.3485 34 1 2.3313 -5.6249 0.1010 35 1 1.2761 -4.5520 2.7600 36 1 1.3301 -6.2689 2.2971 37 1 3.0880 -2.6304 3.6175 38 1 4.8771 -2.6803 3.7554 39 1 3.2428 -3.9648 5.5580 40 1 4.8461 -4.6080 5.1037 41 1 3.6250 -5.8022 7.7950 42 1 3.8760 -2.3062 1.2919 43 1 4.4525 -3.6756 0.3339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036679105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:12 Heat of formation + Delta-G solvation = 24.361220 kcal Electronic energy + Delta-G solvation = -25572.776418 eV Core-core repulsion = 22131.095467 eV Total energy + Delta-G solvation = -3441.680951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77628 -39.92077 -38.15150 -36.86432 -34.50152 -33.83967 -32.00242 -31.13483 -29.79734 -28.56442 -27.11629 -25.87270 -24.41059 -23.88247 -22.16313 -21.70191 -20.04751 -19.46978 -18.91105 -18.26277 -17.73987 -16.82123 -16.75582 -16.68272 -16.16023 -15.70878 -15.34900 -14.77464 -14.54422 -14.43021 -14.38727 -14.27508 -14.10600 -13.81746 -13.44893 -13.32005 -13.10451 -12.99210 -12.90725 -12.79119 -12.65149 -12.51143 -12.30382 -12.01006 -11.82571 -11.68304 -11.66644 -11.35075 -11.04941 -10.78603 -10.67258 -9.76267 -9.69560 -9.17334 -8.82738 -7.84726 -5.20253 -0.15120 0.68327 0.97167 1.04315 1.44856 1.45542 1.54439 1.88815 2.26771 2.48699 3.31631 3.52144 3.59151 3.69329 3.76858 3.93603 3.98882 4.19234 4.22787 4.28106 4.40644 4.42567 4.48739 4.58924 4.65218 4.70660 4.72284 4.76176 4.78926 4.82715 4.92196 5.00760 5.07025 5.13506 5.29583 5.33139 5.48076 5.53541 5.55294 5.56475 5.69044 5.79241 6.23799 6.38228 7.10885 7.12536 7.80145 8.43947 9.25009 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.003580 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.129079 B = 7819.194559 C = 8306.045902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.081 4.081 3 C -0.241 4.241 4 S 0.238 5.762 5 C -0.222 4.222 6 C -0.179 4.179 7 C 0.573 3.427 8 O -0.576 6.576 9 N -0.594 5.594 10 C 0.122 3.878 11 C -0.125 4.125 12 C 0.165 3.835 13 H 0.046 0.954 14 C -0.099 4.099 15 H 0.083 0.917 16 C -0.120 4.120 17 C 0.180 3.820 18 N -0.620 5.620 19 C -0.233 4.233 20 H 0.079 0.921 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.972 3.028 24 H -0.287 1.287 25 H -0.297 1.297 26 H -0.270 1.270 27 C 0.108 3.892 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.191 0.809 32 H 0.203 0.797 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.022 0.978 40 H -0.002 1.002 41 H 0.245 0.755 42 H 0.114 0.886 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 14.422 -16.647 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.092 4.092 3 C -0.376 4.376 4 S 0.506 5.494 5 C -0.359 4.359 6 C -0.197 4.197 7 C 0.362 3.638 8 O -0.458 6.458 9 N -0.326 5.326 10 C -0.001 4.001 11 C -0.165 4.165 12 C 0.059 3.941 13 H 0.064 0.936 14 C -0.118 4.118 15 H 0.102 0.898 16 C -0.159 4.159 17 C 0.055 3.945 18 N -0.345 5.345 19 C -0.362 4.362 20 H 0.097 0.903 21 C -0.257 4.257 22 N -0.598 5.598 23 Si 0.801 3.199 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.195 1.195 27 C -0.014 4.014 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.208 0.792 32 H 0.220 0.780 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.041 0.959 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.131 0.869 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.212 15.111 -16.700 22.912 hybrid contribution -1.806 -2.138 1.352 3.108 sum 2.407 12.972 -15.348 20.240 Atomic orbital electron populations 1.20612 0.89396 1.03825 1.02386 1.19923 0.97606 0.90432 1.01255 1.25627 0.97361 1.02970 1.11618 1.82842 1.03946 0.94852 1.67744 1.26523 0.99492 1.04808 1.05119 1.20071 0.93528 0.93350 1.12744 1.18046 0.83777 0.84296 0.77684 1.90689 1.23089 1.84474 1.47500 1.47692 1.17330 1.10277 1.57253 1.21553 0.99440 0.83151 0.95959 1.22269 0.98921 1.00495 0.94815 1.20817 0.93481 0.95631 0.84122 0.93614 1.20697 1.01406 0.95088 0.94649 0.89849 1.22536 1.01640 0.97183 0.94520 1.20945 0.94504 0.85856 0.93204 1.44978 1.67735 1.21058 1.00699 1.19350 1.24555 1.01613 0.90714 0.90345 1.25614 1.01469 1.00964 0.97685 1.70185 1.47941 1.34371 1.07335 0.85152 0.77877 0.79225 0.77680 1.21368 1.22359 1.19461 1.21455 0.82619 1.02781 0.94570 0.91744 0.89391 0.91542 0.79172 0.78040 0.90174 0.89198 0.94623 0.92268 0.93109 0.88757 0.95918 0.98443 0.94546 0.86892 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 9.90 71.24 0.71 -1.67 16 2 C -0.08 -1.87 6.00 -19.46 -0.12 -1.98 16 3 C -0.24 -3.98 10.91 66.64 0.73 -3.25 16 4 S 0.24 3.20 23.02 -56.49 -1.30 1.90 16 5 C -0.22 -3.96 8.45 67.30 0.57 -3.39 16 6 C -0.18 -4.44 5.62 -19.87 -0.11 -4.55 16 7 C 0.57 17.58 7.44 86.59 0.64 18.23 16 8 O -0.58 -21.19 14.11 -4.15 -0.06 -21.25 16 9 N -0.59 -16.80 3.00 -834.28 -2.50 -19.30 16 10 C 0.12 3.65 6.42 86.31 0.55 4.20 16 11 C -0.12 -4.58 5.19 30.77 0.16 -4.43 16 12 C 0.17 6.36 3.43 44.48 0.15 6.51 16 13 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 14 C -0.10 -2.96 2.45 -12.26 -0.03 -2.99 16 15 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 16 C -0.12 -4.16 6.37 31.22 0.20 -3.96 16 17 C 0.18 8.76 5.40 86.81 0.47 9.22 16 18 N -0.62 -31.05 3.04 -671.87 -2.04 -33.10 16 19 C -0.23 -12.94 9.81 84.03 0.82 -12.11 16 20 H 0.08 4.20 7.68 -2.91 -0.02 4.18 16 21 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 22 N -0.95 -57.17 10.34 21.65 0.22 -56.95 16 23 Si 0.97 46.11 29.56 68.60 2.03 48.14 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 C 0.11 2.48 4.51 85.35 0.38 2.86 16 28 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.09 1.51 8.13 -2.39 -0.02 1.49 16 30 H 0.07 1.90 5.91 -2.39 -0.01 1.88 16 31 H 0.19 2.09 8.06 -2.91 -0.02 2.06 16 32 H 0.20 2.71 5.25 -2.91 -0.02 2.69 16 33 H 0.08 2.57 7.02 -2.39 -0.02 2.55 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 2.25 7.97 -2.39 -0.02 2.24 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 39 H 0.02 1.27 6.94 -2.39 -0.02 1.26 16 40 H 0.00 -0.13 7.89 -2.39 -0.02 -0.15 16 41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.11 2.28 3.79 -2.39 -0.01 2.27 16 43 H 0.10 1.60 7.80 -2.38 -0.02 1.58 16 Total: -1.00 -72.37 343.42 2.96 -69.40 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.02 Total: 11.68 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.60 Total: -0.53 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.32 Total: -109.34 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.25 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.30 Total: 1.90 kcal Total: -72.37 2.96 -69.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036679105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.764 kcal (2) G-P(sol) polarization free energy of solvation -72.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds