Wall clock time and date at job start Tue Mar 31 2020 12:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32770 * 123.45759 * 2 1 4 4 S 1.75508 * 110.57821 * 179.97438 * 3 2 1 5 5 C 1.70451 * 92.43979 * 359.80362 * 4 3 2 6 6 C 1.36006 * 110.82075 * 0.34850 * 5 4 3 7 7 C 1.47188 * 123.46045 * 179.86062 * 6 5 4 8 8 O 1.21639 * 119.99666 * 213.08668 * 7 6 5 9 9 N 1.34779 * 120.00191 * 33.09236 * 7 6 5 10 10 C 1.46598 * 119.67964 * 354.59346 * 9 7 6 11 11 C 1.53954 * 110.56828 * 132.20589 * 10 9 7 12 12 C 1.51513 * 107.35345 * 51.05319 * 11 10 9 13 13 H 1.09000 * 108.80584 * 53.43820 * 12 11 10 14 14 C 1.55100 * 107.76869 * 295.29711 * 12 11 10 15 15 H 1.08996 * 111.33639 * 309.00070 * 14 12 11 16 16 C 1.53739 * 100.32407 * 191.11220 * 14 12 11 17 17 C 1.55286 * 101.84414 * 38.94477 * 16 14 12 18 18 N 1.45467 * 117.35257 * 178.09277 * 12 11 10 19 19 C 1.36932 * 126.40405 * 329.41000 * 18 12 11 20 20 H 1.08002 * 120.00253 * 6.90602 * 19 18 12 21 21 C 1.38815 * 120.00012 * 186.90251 * 19 18 12 22 22 N 1.31622 * 119.99987 * 7.42691 * 21 19 18 23 23 Si 1.86796 * 120.00098 * 187.42289 * 21 19 18 24 24 H 1.48498 * 109.47386 * 265.01029 * 23 21 19 25 25 H 1.48498 * 109.47074 * 145.01303 * 23 21 19 26 26 H 1.48497 * 109.47345 * 25.01409 * 23 21 19 27 27 C 1.48157 * 119.16947 * 174.41241 * 9 7 6 28 28 H 1.08999 * 109.47469 * 270.01922 * 1 2 3 29 29 H 1.09003 * 109.47244 * 30.02377 * 1 2 3 30 30 H 1.08999 * 109.47348 * 150.02344 * 1 2 3 31 31 H 1.07999 * 124.70877 * 359.97438 * 3 2 1 32 32 H 1.08006 * 124.58880 * 180.22379 * 5 4 3 33 33 H 1.08995 * 109.25819 * 11.92647 * 10 9 7 34 34 H 1.08999 * 109.22852 * 252.45982 * 10 9 7 35 35 H 1.09004 * 109.88394 * 291.58696 * 11 10 9 36 36 H 1.09005 * 109.88354 * 170.51674 * 11 10 9 37 37 H 1.09005 * 110.95485 * 280.81320 * 16 14 12 38 38 H 1.08997 * 110.95529 * 157.08441 * 16 14 12 39 39 H 1.09000 * 109.92341 * 218.17274 * 17 16 14 40 40 H 1.09004 * 110.08347 * 96.95883 * 17 16 14 41 41 H 0.96998 * 120.00399 * 179.97438 * 22 21 19 42 42 H 1.08998 * 110.14327 * 112.31612 * 27 9 7 43 43 H 1.09004 * 110.41352 * 350.46788 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2389 1.1077 0.0000 4 16 3.9499 0.7165 0.0007 5 6 3.6410 -0.9598 0.0069 6 6 2.3032 -1.2049 0.0005 7 6 1.7263 -2.5590 0.0007 8 8 0.6789 -2.7738 -0.5793 9 7 2.3584 -3.5608 0.6435 10 6 3.6770 -3.3235 1.2386 11 6 3.7241 -3.8605 2.6807 12 6 3.2273 -5.2915 2.6465 13 1 3.8044 -5.8462 1.9067 14 6 1.7385 -5.2655 2.2125 15 1 1.1620 -4.5636 2.8150 16 6 1.3386 -6.7193 2.5125 17 6 2.0992 -6.9919 3.8386 18 7 3.2221 -6.0274 3.9013 19 6 4.0893 -5.8565 4.9472 20 1 4.8001 -5.0435 4.9322 21 6 4.0549 -6.7284 6.0268 22 7 3.2940 -7.8014 5.9822 23 14 5.0886 -6.3788 7.5429 24 1 6.3756 -7.1132 7.4447 25 1 4.3558 -6.8244 8.7552 26 1 5.3563 -4.9210 7.6343 27 6 1.7018 -4.8855 0.7386 28 1 -0.3634 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.8373 2.1102 -0.0004 32 1 4.4043 -1.7239 0.0128 33 1 3.8801 -2.2527 1.2470 34 1 4.4363 -3.8289 0.6420 35 1 3.0790 -3.2594 3.3215 36 1 4.7480 -3.8324 3.0535 37 1 1.6801 -7.3884 1.7227 38 1 0.2616 -6.8056 2.6560 39 1 2.4846 -8.0114 3.8429 40 1 1.4339 -6.8430 4.6891 41 1 3.2702 -8.4109 6.7365 42 1 2.2509 -5.6198 0.1493 43 1 0.6696 -4.8239 0.3939 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036679106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:15 Heat of formation + Delta-G solvation = 43.720521 kcal Electronic energy + Delta-G solvation = -25347.425160 eV Core-core repulsion = 21906.583691 eV Total energy + Delta-G solvation = -3440.841469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56613 -38.60357 -37.13365 -35.50691 -32.89171 -31.60691 -31.43477 -29.53238 -28.31747 -27.48101 -25.53700 -24.33994 -22.92699 -22.34344 -20.77641 -20.05186 -19.42688 -18.60180 -17.63333 -16.84303 -16.16738 -15.72804 -15.27916 -15.13097 -14.53760 -14.21922 -14.04154 -13.83694 -13.52550 -13.47385 -13.18226 -13.01313 -12.55910 -12.53433 -12.38019 -12.02454 -11.99026 -11.72602 -11.43576 -11.28574 -11.08709 -10.86733 -10.76786 -10.70546 -10.18352 -10.11139 -9.94593 -9.68155 -9.63339 -9.49466 -8.95414 -8.65203 -8.59451 -8.41240 -6.83926 -5.74317 -3.07820 0.63504 1.37636 1.73020 1.91096 2.93403 3.27873 3.37682 3.43341 3.45225 4.46605 4.48531 4.58754 4.95478 5.00240 5.04037 5.17339 5.23161 5.31778 5.37062 5.50896 5.51777 5.53697 5.59870 5.61659 5.77811 5.82658 5.87541 6.00493 6.06959 6.12480 6.16109 6.20923 6.33957 6.37100 6.47373 6.58173 6.62015 6.81003 7.04587 7.45714 7.48344 7.62874 7.77415 8.21316 8.22247 9.16291 9.80858 10.49479 11.38385 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017343 B = 0.003627 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.133471 B = 7718.888173 C = 8757.171802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.052 4.052 3 C -0.243 4.243 4 S 0.171 5.829 5 C -0.222 4.222 6 C -0.145 4.145 7 C 0.575 3.425 8 O -0.541 6.541 9 N -0.598 5.598 10 C 0.083 3.917 11 C -0.130 4.130 12 C 0.168 3.832 13 H 0.019 0.981 14 C -0.125 4.125 15 H 0.078 0.922 16 C -0.135 4.135 17 C 0.175 3.825 18 N -0.593 5.593 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.129 3.871 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.167 0.833 32 H 0.186 0.814 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.252 0.748 42 H 0.070 0.930 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 15.335 -13.188 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.064 4.064 3 C -0.377 4.377 4 S 0.438 5.562 5 C -0.359 4.359 6 C -0.163 4.163 7 C 0.361 3.639 8 O -0.420 6.420 9 N -0.329 5.329 10 C -0.040 4.040 11 C -0.169 4.169 12 C 0.060 3.940 13 H 0.036 0.964 14 C -0.145 4.145 15 H 0.096 0.904 16 C -0.173 4.173 17 C 0.051 3.949 18 N -0.318 5.318 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.008 3.992 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.185 0.815 32 H 0.203 0.797 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.010 15.965 -13.259 20.753 hybrid contribution -0.540 -0.829 1.040 1.435 sum -0.531 15.136 -12.220 19.460 Atomic orbital electron populations 1.20672 0.88900 1.04119 1.02794 1.19818 0.97410 0.89840 0.99300 1.25275 0.96385 1.02514 1.13575 1.83028 1.05739 0.97248 1.70162 1.26148 1.00102 1.02526 1.07109 1.20188 0.92272 0.94566 1.09268 1.17686 0.83912 0.83458 0.78799 1.90721 1.23404 1.83375 1.44533 1.48293 1.19578 1.11274 1.53792 1.22644 0.83476 1.02690 0.95234 1.21899 1.02617 0.98215 0.94146 1.20531 0.92548 0.91046 0.89883 0.96403 1.22587 0.99607 0.97932 0.94388 0.90359 1.22695 0.99892 0.94502 1.00260 1.21521 0.87945 0.94138 0.91326 1.44174 1.33332 1.40643 1.13602 1.18974 1.11590 1.09665 0.95376 0.90471 1.24793 0.99962 0.96622 0.98942 1.69947 1.42697 1.13016 1.30879 0.86164 0.79461 0.77596 0.82927 1.21654 1.21668 1.20662 1.21717 0.98701 0.81977 0.96810 0.91135 0.91565 0.88916 0.81542 0.79748 0.87944 0.91482 0.91425 0.90496 0.92142 0.92057 0.92788 0.94520 0.93757 0.91186 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.92 36.00 0.36 -0.81 16 2 C -0.05 -0.62 6.00 -104.06 -0.62 -1.24 16 3 C -0.24 -2.30 10.91 28.86 0.31 -1.98 16 4 S 0.17 1.46 23.02 -107.50 -2.48 -1.01 16 5 C -0.22 -2.32 8.40 29.93 0.25 -2.07 16 6 C -0.14 -1.88 5.58 -104.63 -0.58 -2.46 16 7 C 0.57 8.82 7.37 -12.63 -0.09 8.72 16 8 O -0.54 -9.57 14.21 5.24 0.07 -9.49 16 9 N -0.60 -8.83 3.01 -173.48 -0.52 -9.35 16 10 C 0.08 1.09 5.02 -3.49 -0.02 1.07 16 11 C -0.13 -2.17 5.45 -26.99 -0.15 -2.31 16 12 C 0.17 3.32 2.58 -68.13 -0.18 3.15 16 13 H 0.02 0.38 7.96 -51.93 -0.41 -0.04 16 14 C -0.12 -2.21 2.79 -89.51 -0.25 -2.46 16 15 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 16 C -0.13 -2.48 6.54 -25.14 -0.16 -2.64 16 17 C 0.18 4.18 5.46 -1.91 -0.01 4.17 16 18 N -0.59 -14.67 3.35 -163.26 -0.55 -15.21 16 19 C -0.23 -6.15 9.89 -15.06 -0.15 -6.29 16 20 H 0.08 1.99 7.18 -52.49 -0.38 1.62 16 21 C -0.01 -0.18 5.45 -17.43 -0.10 -0.28 16 22 N -0.92 -26.72 10.63 55.49 0.59 -26.13 16 23 Si 0.91 21.77 29.56 -169.99 -5.02 16.74 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.13 1.99 5.99 -3.52 -0.02 1.97 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.09 1.22 5.99 -51.93 -0.31 0.91 16 31 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.19 1.65 5.69 -52.48 -0.30 1.35 16 33 H 0.10 1.17 3.51 -52.07 -0.18 0.99 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 36 H 0.08 1.29 7.63 -51.93 -0.40 0.89 16 37 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.43 7.28 -51.93 -0.38 1.05 16 40 H 0.04 0.96 7.82 -51.93 -0.41 0.56 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.07 1.02 8.12 -51.93 -0.42 0.59 16 43 H 0.09 1.43 7.04 -51.93 -0.37 1.07 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -31.41 343.92 -10.19 -41.60 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.06 Total: 1.15 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.41 Total: -3.47 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.48 Total: -50.70 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.48 Total: -1.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.41 -10.19 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036679106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.320 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds