Wall clock time and date at job start Tue Mar 31 2020 12:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33811 * 122.44887 * 2 1 4 4 S 1.70620 * 110.95436 * 180.02562 * 3 2 1 5 5 C 1.75825 * 91.56275 * 0.02562 * 4 3 2 6 6 C 1.46588 * 125.45677 * 180.02562 * 5 4 3 7 7 O 1.21699 * 119.99669 * 154.08239 * 6 5 4 8 8 N 1.34778 * 119.99629 * 334.07551 * 6 5 4 9 9 C 1.46598 * 119.67741 * 174.58347 * 8 6 5 10 10 C 1.53954 * 110.57733 * 132.20113 * 9 8 6 11 11 C 1.51520 * 107.34725 * 51.04675 * 10 9 8 12 12 H 1.09001 * 108.80338 * 53.43960 * 11 10 9 13 13 C 1.55094 * 107.76886 * 295.30453 * 11 10 9 14 14 H 1.08997 * 111.33514 * 308.99346 * 13 11 10 15 15 C 1.53747 * 100.32299 * 191.11385 * 13 11 10 16 16 C 1.55293 * 101.84176 * 38.94324 * 15 13 11 17 17 N 1.45466 * 117.35219 * 178.09588 * 11 10 9 18 18 C 1.36940 * 126.40186 * 329.41677 * 17 11 10 19 19 H 1.07997 * 119.99889 * 348.23192 * 18 17 11 20 20 C 1.38811 * 119.99765 * 168.23392 * 18 17 11 21 21 N 1.31611 * 120.00042 * 7.72340 * 20 18 17 22 22 Si 1.86807 * 119.99812 * 187.72082 * 20 18 17 23 23 H 1.48497 * 109.47301 * 265.82143 * 22 20 18 24 24 H 1.48499 * 109.46992 * 145.81835 * 22 20 18 25 25 H 1.48502 * 109.47050 * 25.82133 * 22 20 18 26 26 C 1.47796 * 119.83666 * 354.93257 * 8 6 5 27 27 C 1.36647 * 109.08653 * 0.26043 * 5 4 3 28 28 H 1.09002 * 109.47509 * 89.97445 * 1 2 3 29 29 H 1.09002 * 109.47257 * 209.97152 * 1 2 3 30 30 H 1.08998 * 109.47177 * 329.97027 * 1 2 3 31 31 H 1.08000 * 124.52371 * 0.05230 * 3 2 1 32 32 H 1.08998 * 109.26287 * 11.91170 * 9 8 6 33 33 H 1.09004 * 109.25189 * 252.47646 * 9 8 6 34 34 H 1.09001 * 109.88052 * 291.59281 * 10 9 8 35 35 H 1.09000 * 109.88428 * 170.50720 * 10 9 8 36 36 H 1.09005 * 110.95426 * 280.81101 * 15 13 11 37 37 H 1.08998 * 110.95916 * 157.08142 * 15 13 11 38 38 H 1.08996 * 109.92067 * 218.17676 * 16 15 13 39 39 H 1.09005 * 110.08535 * 96.96120 * 16 15 13 40 40 H 0.97003 * 120.00181 * 180.02562 * 21 20 18 41 41 H 1.09000 * 110.63743 * 112.73492 * 26 8 6 42 42 H 1.09001 * 109.73035 * 351.00852 * 26 8 6 43 43 H 1.07999 * 123.35266 * 179.73608 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 16 3.8969 0.7892 -0.0007 5 6 3.5936 -0.9427 -0.0018 6 6 4.6231 -1.9862 -0.0023 7 8 4.3755 -3.0854 0.4577 8 7 5.8438 -1.7283 -0.5122 9 6 6.9038 -2.7349 -0.4022 10 6 7.6037 -2.9342 -1.7589 11 6 8.0006 -1.5634 -2.2682 12 1 8.5802 -1.0563 -1.4968 13 6 6.6995 -0.7621 -2.5334 14 1 6.0037 -1.3290 -3.1518 15 6 7.2698 0.4445 -3.2968 16 6 8.3571 -0.2233 -4.1818 17 7 8.7228 -1.5023 -3.5294 18 6 9.5765 -2.4520 -4.0238 19 1 9.9153 -3.2569 -3.3884 20 6 10.0065 -2.3800 -5.3417 21 7 9.7190 -1.3228 -6.0709 22 14 10.9932 -3.7839 -6.0802 23 1 12.4434 -3.4944 -5.9451 24 1 10.6490 -3.9283 -7.5175 25 1 10.6714 -5.0449 -5.3651 26 6 6.1066 -0.4316 -1.1708 27 6 2.2446 -1.1601 -0.0074 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 1.8025 2.1231 0.0008 32 1 6.4693 -3.6810 -0.0796 33 1 7.6363 -2.4064 0.3352 34 1 6.9194 -3.4073 -2.4631 35 1 8.4916 -3.5533 -1.6307 36 1 7.7144 1.1653 -2.6105 37 1 6.5024 0.9154 -3.9111 38 1 9.2319 0.4237 -4.2470 39 1 7.9620 -0.4151 -5.1795 40 1 10.0191 -1.2726 -6.9920 41 1 6.8138 0.1588 -0.5883 42 1 5.1717 0.1156 -1.2923 43 1 1.8019 -2.1452 -0.0133 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036708347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:21 Heat of formation + Delta-G solvation = 32.566549 kcal Electronic energy + Delta-G solvation = -25120.279384 eV Core-core repulsion = 21678.954243 eV Total energy + Delta-G solvation = -3441.325142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32273 -38.71917 -37.82742 -35.29808 -32.63009 -32.32113 -30.86816 -29.58077 -28.31593 -27.81921 -25.44466 -24.37344 -23.37273 -22.02646 -20.29755 -20.02301 -19.35855 -19.11816 -17.87028 -16.72543 -16.04628 -15.96250 -15.23850 -15.03781 -14.79468 -14.54757 -14.09840 -13.85840 -13.48476 -13.32841 -13.22760 -13.05890 -12.82607 -12.53906 -12.23458 -12.12330 -12.04437 -11.80461 -11.59668 -11.42096 -10.97698 -10.83177 -10.74494 -10.66167 -10.20723 -10.14431 -9.95285 -9.90024 -9.67960 -9.53860 -9.01443 -8.58887 -8.54401 -8.36404 -6.84717 -5.75585 -3.09235 0.42346 1.32034 1.76972 2.24466 2.91776 3.19092 3.38438 3.45042 3.46356 4.40439 4.47764 4.77312 4.83712 4.93542 5.12258 5.13763 5.28200 5.34254 5.36448 5.37902 5.41574 5.50380 5.57421 5.66224 5.73852 5.77905 5.84534 5.90698 6.08232 6.13997 6.16036 6.22008 6.23608 6.37049 6.43657 6.57839 6.63989 6.80853 7.03426 7.36636 7.45156 7.66491 7.78418 8.12969 8.23707 9.16311 9.80021 10.49026 11.35904 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023174 B = 0.003365 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.974136 B = 8319.227117 C = 8866.226250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.118 4.118 3 C -0.259 4.259 4 S 0.229 5.771 5 C -0.261 4.261 6 C 0.587 3.413 7 O -0.537 6.537 8 N -0.601 5.601 9 C 0.117 3.883 10 C -0.128 4.128 11 C 0.168 3.832 12 H 0.019 0.981 13 C -0.122 4.122 14 H 0.083 0.917 15 C -0.135 4.135 16 C 0.169 3.831 17 N -0.593 5.593 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.107 3.893 27 C -0.058 4.058 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.164 0.836 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.030 0.970 39 H 0.067 0.933 40 H 0.252 0.748 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.810 6.914 12.389 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C -0.396 4.396 4 S 0.499 5.501 5 C -0.381 4.381 6 C 0.374 3.626 7 O -0.416 6.416 8 N -0.333 5.333 9 C -0.005 4.005 10 C -0.168 4.168 11 C 0.060 3.940 12 H 0.037 0.963 13 C -0.142 4.142 14 H 0.101 0.899 15 C -0.174 4.174 16 C 0.045 3.955 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.200 4.200 21 N -0.564 5.564 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.017 4.017 27 C -0.091 4.091 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.182 0.818 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.464 7.215 12.426 19.691 hybrid contribution -0.783 -1.366 -0.586 1.680 sum -14.247 5.849 11.840 19.426 Atomic orbital electron populations 1.20508 0.89687 1.02697 1.02367 1.18731 0.97772 0.91542 1.05033 1.25506 1.00831 1.03171 1.10133 1.83415 1.02262 0.97802 1.66616 1.24605 0.98019 0.97429 1.18071 1.17050 0.81165 0.86253 0.78096 1.90798 1.79902 1.23194 1.47700 1.48163 1.10846 1.17680 1.56630 1.21697 0.88565 0.92078 0.98191 1.21896 1.00328 0.99484 0.95047 1.20612 0.90066 0.93143 0.90178 0.96346 1.22564 0.98580 0.99193 0.93911 0.89902 1.22712 0.99479 0.96149 0.99028 1.21662 0.93315 0.85545 0.94961 1.44177 1.49956 1.19120 1.18537 1.18961 1.19456 1.03389 0.93759 0.90446 1.24887 1.00968 0.97794 0.96348 1.69926 1.50419 1.27374 1.08667 0.86207 0.79449 0.82092 0.78695 1.21686 1.21633 1.20564 1.22236 1.01038 0.84078 0.94304 1.20591 0.90961 0.99852 0.97704 0.91207 0.91399 0.91637 0.81796 0.89119 0.91709 0.91321 0.90404 0.92275 0.91937 0.95142 0.91471 0.93729 0.90278 0.89741 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.13 36.00 0.36 -0.31 16 2 C -0.12 -1.18 5.78 -106.45 -0.62 -1.79 16 3 C -0.26 -2.39 10.67 29.18 0.31 -2.08 16 4 S 0.23 2.34 18.91 -107.50 -2.03 0.30 16 5 C -0.26 -3.46 5.87 -36.79 -0.22 -3.68 16 6 C 0.59 9.32 7.58 -12.89 -0.10 9.22 16 7 O -0.54 -9.99 16.28 5.19 0.08 -9.91 16 8 N -0.60 -9.11 2.99 -174.00 -0.52 -9.63 16 9 C 0.12 1.80 6.34 -3.49 -0.02 1.77 16 10 C -0.13 -2.29 5.51 -26.98 -0.15 -2.44 16 11 C 0.17 3.31 2.57 -68.13 -0.18 3.14 16 12 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 13 C -0.12 -2.07 2.84 -89.52 -0.25 -2.33 16 14 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 15 C -0.13 -2.34 6.54 -25.13 -0.16 -2.50 16 16 C 0.17 3.94 5.58 -1.91 -0.01 3.93 16 17 N -0.59 -14.54 3.35 -163.26 -0.55 -15.09 16 18 C -0.23 -6.14 9.78 -15.06 -0.15 -6.29 16 19 H 0.08 2.02 7.42 -52.49 -0.39 1.63 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 21 N -0.92 -26.39 10.51 55.49 0.58 -25.81 16 22 Si 0.91 21.79 29.56 -169.99 -5.03 16.76 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.11 1.48 4.97 -3.72 -0.02 1.46 16 27 C -0.06 -0.70 9.89 -40.43 -0.40 -1.10 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.09 1.42 6.92 -51.93 -0.36 1.06 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 35 H 0.08 1.40 7.72 -51.93 -0.40 1.00 16 36 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 39 H 0.07 1.76 6.78 -51.93 -0.35 1.40 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 42 H 0.09 1.05 3.67 -22.12 -0.08 0.97 16 43 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -31.33 348.49 -10.09 -41.41 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.19 Total: -0.12 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.69 Total: -3.18 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.49 Total: -50.53 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.03 Total: 0.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.33 -10.09 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036708347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.977 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds