Wall clock time and date at job start Tue Mar 31 2020 12:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37473 * 123.35119 * 2 1 4 4 C 1.33819 * 115.10315 * 180.27314 * 3 2 1 5 5 S 1.70619 * 110.95321 * 359.74654 * 4 3 2 6 6 C 1.36652 * 123.35791 * 179.80190 * 2 1 3 7 7 C 1.46579 * 125.44989 * 0.02562 * 6 2 1 8 8 O 1.21705 * 120.00345 * 49.47663 * 7 6 2 9 9 N 1.34779 * 119.99747 * 229.46938 * 7 6 2 10 10 C 1.46935 * 120.44674 * 356.03563 * 9 7 6 11 11 C 1.53588 * 108.55306 * 125.74496 * 10 9 7 12 12 H 1.09006 * 110.59881 * 172.12953 * 11 10 9 13 13 C 1.53371 * 108.68733 * 294.32664 * 11 10 9 14 14 C 1.53009 * 109.25274 * 60.26103 * 13 11 10 15 15 C 1.53010 * 109.79473 * 60.57725 * 14 13 11 16 16 C 1.53370 * 109.27595 * 299.43366 * 15 14 13 17 17 H 1.09000 * 111.07888 * 177.79712 * 16 15 14 18 18 C 1.46948 * 120.44131 * 176.01473 * 9 7 6 19 19 N 1.47567 * 107.76503 * 51.11292 * 11 10 9 20 20 C 1.36943 * 121.61283 * 120.48478 * 19 11 10 21 21 H 1.08000 * 120.00012 * 207.83297 * 20 19 11 22 22 C 1.38812 * 119.99586 * 27.83124 * 20 19 11 23 23 N 1.31616 * 120.00276 * 19.09850 * 22 20 19 24 24 Si 1.86809 * 119.99547 * 199.09436 * 22 20 19 25 25 H 1.48496 * 109.46592 * 84.95390 * 24 22 20 26 26 H 1.48501 * 109.46710 * 204.94925 * 24 22 20 27 27 H 1.48495 * 109.46908 * 324.95429 * 24 22 20 28 28 H 1.09004 * 109.47145 * 270.19853 * 1 2 3 29 29 H 1.08998 * 109.47624 * 30.20024 * 1 2 3 30 30 H 1.09000 * 109.47107 * 150.20202 * 1 2 3 31 31 H 1.08002 * 122.45100 * 0.04182 * 3 2 1 32 32 H 1.07996 * 124.52246 * 179.77250 * 4 3 2 33 33 H 1.09002 * 109.62925 * 245.46923 * 10 9 7 34 34 H 1.09010 * 109.62147 * 6.02931 * 10 9 7 35 35 H 1.09002 * 109.50315 * 180.19159 * 13 11 10 36 36 H 1.08999 * 109.50858 * 300.27998 * 13 11 10 37 37 H 1.08997 * 109.41577 * 180.67884 * 14 13 11 38 38 H 1.09002 * 109.41768 * 300.54569 * 14 13 11 39 39 H 1.09001 * 109.50341 * 179.49478 * 15 14 13 40 40 H 1.09003 * 109.50280 * 59.37432 * 15 14 13 41 41 H 1.09000 * 109.62955 * 353.98047 * 18 9 7 42 42 H 1.09000 * 109.63268 * 114.55533 * 18 9 7 43 43 H 0.97001 * 120.00106 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2627 1.1483 0.0000 4 6 3.5870 0.9564 -0.0058 5 16 3.9623 -0.7080 -0.0046 6 6 2.2583 -1.1414 0.0039 7 6 1.7284 -2.5080 0.0081 8 8 0.8702 -2.8305 -0.7923 9 7 2.1918 -3.4077 0.8984 10 6 3.2881 -3.0554 1.8111 11 6 2.8334 -3.3338 3.2514 12 1 3.6655 -3.2164 3.9457 13 6 1.6862 -2.3768 3.5983 14 6 0.5223 -2.6137 2.6337 15 6 0.0246 -4.0545 2.7662 16 6 1.1653 -5.0184 2.4166 17 1 0.8534 -6.0556 2.5389 18 6 1.6069 -4.7539 0.9695 19 7 2.3075 -4.7117 3.2992 20 6 2.8533 -5.6603 4.1224 21 1 2.7958 -6.7051 3.8550 22 6 3.4803 -5.2788 5.3006 23 7 3.2386 -4.0944 5.8212 24 14 4.6673 -6.4466 6.1473 25 1 6.0178 -6.3008 5.5472 26 1 4.7316 -6.1232 7.5953 27 1 4.1962 -7.8440 5.9725 28 1 -0.3634 0.0036 1.0277 29 1 -0.3634 0.8881 -0.5169 30 1 -0.3633 -0.8918 -0.5107 31 1 1.8200 2.1335 0.0007 32 1 4.3204 1.7491 -0.0102 33 1 4.1651 -3.6603 1.5806 34 1 3.5302 -1.9982 1.7015 35 1 1.3551 -2.5609 4.6204 36 1 2.0313 -1.3468 3.5074 37 1 -0.2900 -1.9265 2.8702 38 1 0.8579 -2.4399 1.6113 39 1 -0.8099 -4.2155 2.0837 40 1 -0.3023 -4.2339 3.7905 41 1 0.7438 -4.8136 0.3066 42 1 2.3515 -5.4928 0.6732 43 1 3.6765 -3.8280 6.6447 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039501653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:34 Heat of formation + Delta-G solvation = 50.971567 kcal Electronic energy + Delta-G solvation = -26865.134348 eV Core-core repulsion = 23424.607308 eV Total energy + Delta-G solvation = -3440.527040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70425 -38.37769 -37.22469 -33.97845 -32.83910 -32.00868 -30.83052 -30.32752 -28.44340 -26.57993 -25.53425 -23.86983 -23.25628 -21.72605 -21.35914 -20.43521 -18.65054 -18.05723 -17.91107 -16.61493 -15.82740 -15.56314 -14.94072 -14.79055 -14.51420 -14.03633 -13.78970 -13.52411 -13.35662 -13.14057 -12.93657 -12.79407 -12.56280 -12.20741 -12.09152 -11.99960 -11.86831 -11.65109 -11.30686 -11.21618 -10.95276 -10.81108 -10.73016 -10.30607 -10.15168 -10.09992 -10.01689 -9.73522 -9.44174 -9.33549 -8.66150 -8.53745 -8.25024 -7.89527 -6.64976 -5.86172 -3.28663 0.71880 1.49101 1.95884 2.53147 3.13323 3.33850 3.41493 3.41689 3.51331 4.42452 4.80040 4.89455 5.16462 5.27258 5.29252 5.35156 5.53928 5.70101 5.72527 5.76304 5.77889 5.86875 5.94214 5.96483 6.00117 6.02579 6.13623 6.24910 6.37685 6.40700 6.45349 6.47563 6.50320 6.63825 6.71400 6.87786 7.00774 7.07959 7.10303 7.43585 7.54168 7.71637 7.83762 8.33185 8.43633 9.09868 9.72128 10.34416 11.20726 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.005110 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.091419 B = 5478.632019 C = 6009.727455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.040 4.040 3 C -0.141 4.141 4 C -0.249 4.249 5 S 0.213 5.787 6 C -0.255 4.255 7 C 0.591 3.409 8 O -0.544 6.544 9 N -0.581 5.581 10 C 0.074 3.926 11 C 0.181 3.819 12 H 0.115 0.885 13 C -0.112 4.112 14 C -0.139 4.139 15 C -0.122 4.122 16 C 0.152 3.848 17 H 0.079 0.921 18 C 0.102 3.898 19 N -0.578 5.578 20 C -0.251 4.251 21 H 0.068 0.932 22 C 0.006 3.994 23 N -0.895 5.895 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.280 1.280 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.140 0.860 32 H 0.165 0.835 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 9.066 -9.871 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.054 4.054 3 C -0.173 4.173 4 C -0.386 4.386 5 S 0.482 5.518 6 C -0.375 4.375 7 C 0.379 3.621 8 O -0.424 6.424 9 N -0.312 5.312 10 C -0.051 4.051 11 C 0.074 3.926 12 H 0.133 0.867 13 C -0.151 4.151 14 C -0.177 4.177 15 C -0.161 4.161 16 C 0.044 3.956 17 H 0.098 0.902 18 C -0.022 4.022 19 N -0.299 5.299 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.194 4.194 23 N -0.539 5.539 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.158 0.842 32 H 0.183 0.817 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.746 8.089 -10.105 12.966 hybrid contribution -0.565 0.570 0.754 1.102 sum 0.181 8.659 -9.352 12.746 Atomic orbital electron populations 1.20646 0.89257 1.03686 1.02796 1.19318 0.97439 0.90373 0.98310 1.19823 0.92551 0.99349 1.05596 1.25284 1.00643 1.02439 1.10235 1.83240 1.03867 0.97311 1.67411 1.24409 0.97520 0.97689 1.17907 1.16745 0.81865 0.83039 0.80426 1.90771 1.33115 1.78988 1.39550 1.48081 1.35655 1.13217 1.34282 1.23012 0.88614 0.99913 0.93559 1.21081 0.96785 0.84232 0.90537 0.86709 1.21790 0.96251 0.96918 1.00143 1.22122 0.97660 0.95898 1.01983 1.21917 0.97328 0.96210 1.00633 1.21245 0.88467 0.97312 0.88602 0.90246 1.22300 0.98360 0.81683 0.99825 1.44418 1.31818 1.08057 1.45605 1.19144 1.31153 0.88814 0.98926 0.91449 1.25005 1.01483 0.97171 0.95694 1.69996 1.43200 1.20685 1.20015 0.86328 0.81544 0.80583 0.78414 1.21423 1.21839 1.20554 0.90830 0.91388 0.89830 0.84191 0.81717 0.91520 0.90626 0.90733 0.94781 0.95130 0.90304 0.93981 0.92320 0.89869 0.91730 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.94 36.00 0.36 -1.02 16 2 C -0.04 -0.57 5.90 -105.48 -0.62 -1.19 16 3 C -0.14 -1.68 9.97 -41.41 -0.41 -2.09 16 4 C -0.25 -2.77 10.92 29.18 0.32 -2.45 16 5 S 0.21 2.74 20.22 -107.50 -2.17 0.57 16 6 C -0.26 -4.03 5.16 -36.79 -0.19 -4.22 16 7 C 0.59 10.74 4.60 -12.90 -0.06 10.68 16 8 O -0.54 -11.00 15.03 5.18 0.08 -10.92 16 9 N -0.58 -10.63 1.65 -173.83 -0.29 -10.91 16 10 C 0.07 1.36 5.40 -3.50 -0.02 1.34 16 11 C 0.18 3.93 2.67 -66.85 -0.18 3.75 16 12 H 0.12 2.82 5.92 -51.93 -0.31 2.51 16 13 C -0.11 -2.34 5.56 -26.53 -0.15 -2.49 16 14 C -0.14 -2.69 5.55 -26.72 -0.15 -2.83 16 15 C -0.12 -2.39 5.58 -26.53 -0.15 -2.53 16 16 C 0.15 3.05 3.62 -66.85 -0.24 2.81 16 17 H 0.08 1.57 8.01 -51.93 -0.42 1.15 16 18 C 0.10 1.88 5.88 -3.49 -0.02 1.86 16 19 N -0.58 -13.31 2.53 -155.43 -0.39 -13.71 16 20 C -0.25 -6.40 9.70 -15.06 -0.15 -6.55 16 21 H 0.07 1.71 7.90 -52.49 -0.41 1.29 16 22 C 0.01 0.14 4.96 -17.43 -0.09 0.06 16 23 N -0.90 -24.01 11.04 55.49 0.61 -23.40 16 24 Si 0.90 20.64 29.60 -169.99 -5.03 15.61 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.26 6.50 -51.93 -0.34 0.92 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.27 4.20 -35.05 -0.15 1.12 16 35 H 0.07 1.79 7.97 -51.93 -0.41 1.38 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.49 2.38 -52.48 -0.13 1.37 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.50 7.00 -51.93 -0.36 1.13 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -28.45 336.26 -9.76 -38.21 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.89 Total: 4.37 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.74 Total: -4.90 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.07 Total: -48.02 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.17 Total: 0.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.45 -9.76 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039501653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.186 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds