Wall clock time and date at job start Tue Mar 31 2020 12:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32776 * 123.45974 * 2 1 4 4 S 1.75495 * 110.57771 * 179.97438 * 3 2 1 5 5 C 1.70450 * 92.44721 * 359.81864 * 4 3 2 6 6 C 1.36010 * 110.81597 * 0.31947 * 5 4 3 7 7 C 1.47187 * 123.46167 * 179.89493 * 6 5 4 8 8 O 1.21642 * 120.00019 * 169.20617 * 7 6 5 9 9 N 1.34780 * 120.00018 * 349.19493 * 7 6 5 10 10 C 1.48257 * 127.73450 * 173.00915 * 9 7 6 11 11 C 1.54717 * 104.66533 * 141.19263 * 10 9 7 12 12 C 1.53033 * 104.47357 * 23.66776 * 11 10 9 13 13 C 1.53886 * 111.37121 * 121.01410 * 12 11 10 14 14 C 1.55146 * 101.45152 * 154.99006 * 13 12 11 15 15 N 1.47538 * 105.06808 * 324.20750 * 14 13 12 16 16 C 1.36933 * 125.67432 * 203.97342 * 15 14 13 17 17 H 1.08001 * 120.00345 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99738 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00227 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00102 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47313 * 60.00194 * 20 18 16 22 22 H 1.48504 * 109.47201 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47167 * 299.99966 * 20 18 16 24 24 C 1.47604 * 108.52124 * 23.93472 * 15 14 13 25 25 C 1.48440 * 127.73426 * 353.01103 * 9 7 6 26 26 H 1.08997 * 109.46971 * 270.02163 * 1 2 3 27 27 H 1.08993 * 109.47229 * 30.02338 * 1 2 3 28 28 H 1.08999 * 109.46981 * 150.02300 * 1 2 3 29 29 H 1.08000 * 124.70562 * 359.94246 * 3 2 1 30 30 H 1.08003 * 124.59402 * 180.21003 * 5 4 3 31 31 H 1.08999 * 110.39752 * 22.39303 * 10 9 7 32 32 H 1.08996 * 110.49320 * 260.03890 * 10 9 7 33 33 H 1.09003 * 110.42866 * 264.91760 * 11 10 9 34 34 H 1.09000 * 110.53397 * 142.47214 * 11 10 9 35 35 H 1.08993 * 111.02898 * 36.95128 * 13 12 11 36 36 H 1.08994 * 111.06104 * 273.04705 * 13 12 11 37 37 H 1.09008 * 110.33847 * 83.12947 * 14 13 12 38 38 H 1.08994 * 110.34221 * 205.27633 * 14 13 12 39 39 H 0.96993 * 120.00246 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.94626 * 238.66312 * 24 15 14 41 41 H 1.09000 * 109.96195 * 117.41302 * 24 15 14 42 42 H 1.08998 * 110.46701 * 99.69684 * 25 9 7 43 43 H 1.09005 * 110.46546 * 337.11053 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7165 0.0007 5 6 3.6411 -0.9598 0.0064 6 6 2.3033 -1.2050 0.0006 7 6 1.7263 -2.5590 0.0013 8 8 0.5349 -2.7124 0.1932 9 7 2.5179 -3.6290 -0.2110 10 6 2.1533 -5.0623 -0.1072 11 6 2.8986 -5.7420 -1.2803 12 6 4.0686 -4.8038 -1.5851 13 6 5.4196 -5.5255 -1.4364 14 6 6.3243 -4.6815 -2.3725 15 7 5.4535 -4.2909 -3.4976 16 6 5.8768 -3.9541 -4.7555 17 1 5.1567 -3.6812 -5.5127 18 6 7.2317 -3.9636 -5.0575 19 7 8.1094 -4.2967 -4.1349 20 14 7.8094 -3.5036 -6.7734 21 1 7.3824 -2.1156 -7.0840 22 1 9.2905 -3.5912 -6.8371 23 1 7.2147 -4.4375 -7.7629 24 6 4.0510 -4.3252 -3.0388 25 6 3.9501 -3.6363 -0.6011 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.8374 2.1102 -0.0009 30 1 4.4044 -1.7239 0.0120 31 1 1.0763 -5.1892 -0.2168 32 1 2.4886 -5.4733 0.8450 33 1 2.2442 -5.8286 -2.1477 34 1 3.2659 -6.7240 -0.9822 35 1 5.3524 -6.5566 -1.7829 36 1 5.7749 -5.4834 -0.4068 37 1 6.6887 -3.7966 -1.8505 38 1 7.1613 -5.2804 -2.7314 39 1 9.0560 -4.3037 -4.3461 40 1 3.4760 -5.0190 -3.6522 41 1 3.6158 -3.3276 -3.0971 42 1 4.5817 -3.8071 0.2706 43 1 4.2172 -2.6986 -1.0885 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041185607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:22 Heat of formation + Delta-G solvation = 42.067623 kcal Electronic energy + Delta-G solvation = -25390.537485 eV Core-core repulsion = 21949.624341 eV Total energy + Delta-G solvation = -3440.913144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46249 -38.73818 -37.01741 -35.62085 -32.81224 -31.75779 -30.15562 -29.21680 -28.16063 -27.55694 -26.09130 -24.80473 -23.31824 -22.26706 -20.40059 -20.36493 -18.92963 -18.56795 -17.43151 -16.85204 -16.58020 -15.65911 -15.23645 -14.84053 -14.53218 -14.26293 -14.12774 -13.69610 -13.58615 -13.32412 -13.21540 -12.73041 -12.53293 -12.27981 -12.11132 -12.04233 -11.89527 -11.64278 -11.54707 -11.43031 -11.13627 -10.94663 -10.90928 -10.80163 -10.25705 -10.09448 -9.99101 -9.83559 -9.71435 -9.47651 -8.92386 -8.70111 -8.65695 -8.31875 -6.86893 -5.68380 -3.09690 0.76250 1.53284 1.89815 1.97508 2.99802 3.38062 3.38816 3.43339 3.44235 4.45430 4.54020 4.66446 4.73881 4.97514 4.98972 5.12197 5.25952 5.33489 5.39990 5.46047 5.48448 5.61739 5.63602 5.71238 5.72693 5.76274 5.84457 5.91488 5.93447 6.05563 6.14493 6.19633 6.31025 6.37894 6.47409 6.50564 6.56009 6.71838 6.80318 7.43031 7.58815 7.60952 7.81223 8.23710 8.32029 9.18996 9.79284 10.44492 11.35477 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.004291 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.461255 B = 6524.164879 C = 7795.437341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.052 4.052 3 C -0.250 4.250 4 S 0.185 5.815 5 C -0.214 4.214 6 C -0.154 4.154 7 C 0.600 3.400 8 O -0.543 6.543 9 N -0.616 5.616 10 C 0.108 3.892 11 C -0.120 4.120 12 C -0.083 4.083 13 C -0.132 4.132 14 C 0.151 3.849 15 N -0.604 5.604 16 C -0.222 4.222 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.151 3.849 25 C 0.104 3.896 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.187 0.813 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.010 0.990 38 H 0.106 0.894 39 H 0.252 0.748 40 H 0.027 0.973 41 H 0.020 0.980 42 H 0.075 0.925 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 5.018 11.661 15.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.063 4.063 3 C -0.385 4.385 4 S 0.452 5.548 5 C -0.352 4.352 6 C -0.172 4.172 7 C 0.389 3.611 8 O -0.422 6.422 9 N -0.349 5.349 10 C -0.014 4.014 11 C -0.158 4.158 12 C -0.085 4.085 13 C -0.171 4.171 14 C 0.027 3.973 15 N -0.330 5.330 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.025 3.975 25 C -0.018 4.018 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.184 0.816 30 H 0.203 0.797 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.028 0.972 38 H 0.124 0.876 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.038 0.962 42 H 0.093 0.907 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.537 5.956 11.651 15.624 hybrid contribution -0.747 -0.604 -0.935 1.340 sum -9.284 5.351 10.717 15.155 Atomic orbital electron populations 1.20561 0.88814 1.03206 1.02690 1.19815 0.97375 0.89852 0.99230 1.25291 0.96674 1.02475 1.14037 1.83102 1.05351 0.97222 1.69097 1.26482 1.00490 1.03042 1.05199 1.20057 0.92096 0.93978 1.11021 1.17147 0.85046 0.82596 0.76299 1.90730 1.14442 1.85865 1.51177 1.48927 1.12097 1.05925 1.67978 1.22389 1.00863 0.79616 0.98562 1.22497 0.96738 0.98529 0.98077 1.21593 0.96130 0.94532 0.96203 1.23002 0.94384 0.99674 1.00040 1.21990 0.93732 0.95641 0.85981 1.44659 0.99465 1.80035 1.08831 1.19024 0.91296 1.38217 0.86482 0.90648 1.24751 0.95657 1.02039 0.98040 1.69774 1.00952 1.54719 1.31721 0.86174 0.77546 0.78282 0.83637 1.21238 1.21545 1.21171 1.21267 0.88638 0.97287 0.90315 1.22836 0.80927 1.00400 0.97683 0.91070 0.92019 0.89598 0.81588 0.79665 0.90048 0.91209 0.90732 0.90051 0.91539 0.92079 0.97153 0.87587 0.93703 0.95513 0.96171 0.90736 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.43 36.00 0.34 -0.79 16 2 C -0.05 -0.69 6.00 -104.06 -0.62 -1.31 16 3 C -0.25 -2.82 10.91 28.86 0.31 -2.51 16 4 S 0.18 2.09 23.02 -107.50 -2.47 -0.38 16 5 C -0.21 -2.87 9.18 29.93 0.27 -2.60 16 6 C -0.15 -2.27 5.94 -104.63 -0.62 -2.89 16 7 C 0.60 9.75 7.82 -12.62 -0.10 9.65 16 8 O -0.54 -9.82 14.65 5.24 0.08 -9.74 16 9 N -0.62 -9.15 3.33 -170.88 -0.57 -9.72 16 10 C 0.11 1.39 7.10 -2.17 -0.02 1.38 16 11 C -0.12 -1.60 6.31 -25.81 -0.16 -1.76 16 12 C -0.08 -1.34 0.79 -153.93 -0.12 -1.46 16 13 C -0.13 -2.26 5.90 -25.13 -0.15 -2.40 16 14 C 0.15 3.44 5.81 -2.34 -0.01 3.42 16 15 N -0.60 -14.87 3.42 -170.14 -0.58 -15.45 16 16 C -0.22 -6.06 10.29 -15.06 -0.15 -6.22 16 17 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -26.09 10.09 55.49 0.56 -25.53 16 20 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.15 3.07 6.37 -3.41 -0.02 3.05 16 25 C 0.10 1.53 4.27 -2.90 -0.01 1.51 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.09 1.21 6.32 -51.93 -0.33 0.88 16 29 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.19 2.40 4.65 -52.48 -0.24 2.16 16 31 H 0.08 1.07 7.84 -51.93 -0.41 0.66 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.03 7.41 -51.93 -0.38 0.64 16 34 H 0.08 0.95 7.62 -51.93 -0.40 0.56 16 35 H 0.07 1.13 7.90 -51.93 -0.41 0.72 16 36 H 0.06 0.89 7.65 -51.93 -0.40 0.50 16 37 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 38 H 0.11 2.76 5.88 -51.93 -0.31 2.45 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.03 0.56 7.48 -51.93 -0.39 0.17 16 41 H 0.02 0.43 7.63 -51.93 -0.40 0.04 16 42 H 0.07 0.97 7.53 -51.93 -0.39 0.58 16 43 H 0.09 1.51 4.73 -51.93 -0.25 1.27 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -30.85 346.40 -9.91 -40.76 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.95 Total: 1.38 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.16 Total: -3.28 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.59 Total: -50.70 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.47 Total: -0.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.85 -9.91 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041185607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.830 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds