Wall clock time and date at job start Tue Mar 31 2020 12:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32769 * 123.46032 * 2 1 4 4 S 1.75511 * 110.57848 * 179.73409 * 3 2 1 5 5 C 1.70446 * 92.44192 * 0.02562 * 4 3 2 6 6 C 1.36014 * 110.81866 * 359.97438 * 5 4 3 7 7 C 1.47184 * 123.45929 * 180.02562 * 6 5 4 8 8 O 1.21636 * 119.99911 * 205.14124 * 7 6 5 9 9 N 1.34772 * 120.00376 * 25.13506 * 7 6 5 10 10 C 1.47568 * 125.67385 * 5.10419 * 9 7 6 11 11 C 1.55427 * 104.88191 * 156.02932 * 10 9 7 12 12 C 1.53657 * 101.31361 * 35.82381 * 11 10 9 13 13 C 1.53657 * 111.42415 * 204.76997 * 12 11 10 14 14 C 1.55185 * 101.41967 * 272.73911 * 13 12 11 15 15 N 1.47557 * 105.00587 * 324.50179 * 14 13 12 16 16 C 1.36940 * 125.67570 * 203.82654 * 15 14 13 17 17 H 1.08000 * 120.00152 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99706 * 0.04917 * 16 15 14 19 19 N 1.31613 * 120.00075 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99862 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47043 * 89.99576 * 20 18 16 22 22 H 1.48494 * 109.46999 * 209.99699 * 20 18 16 23 23 H 1.48500 * 109.46898 * 329.99757 * 20 18 16 24 24 C 1.47405 * 108.65141 * 23.86450 * 15 14 13 25 25 C 1.47412 * 125.67661 * 185.40403 * 9 7 6 26 26 H 1.08997 * 109.47699 * 90.01819 * 1 2 3 27 27 H 1.09002 * 109.46981 * 210.02119 * 1 2 3 28 28 H 1.09010 * 109.46803 * 330.02077 * 1 2 3 29 29 H 1.08003 * 124.71553 * 359.71926 * 3 2 1 30 30 H 1.08001 * 124.58832 * 179.97438 * 5 4 3 31 31 H 1.09005 * 110.33048 * 275.01674 * 10 9 7 32 32 H 1.08996 * 110.33249 * 37.24533 * 10 9 7 33 33 H 1.09004 * 111.25191 * 277.75319 * 11 10 9 34 34 H 1.09000 * 110.95300 * 153.76498 * 11 10 9 35 35 H 1.09004 * 111.03052 * 30.76922 * 13 12 11 36 36 H 1.08998 * 111.03558 * 154.69823 * 13 12 11 37 37 H 1.09000 * 110.33030 * 205.62276 * 14 13 12 38 38 H 1.08998 * 110.42252 * 83.43156 * 14 13 12 39 39 H 0.97001 * 120.00099 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.98986 * 238.53558 * 24 15 14 41 41 H 1.09002 * 109.98352 * 117.23507 * 24 15 14 42 42 H 1.08998 * 109.98674 * 301.46490 * 25 9 7 43 43 H 1.09004 * 109.98224 * 62.73100 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7164 0.0076 5 6 3.6410 -0.9599 0.0100 6 6 2.3032 -1.2049 0.0057 7 6 1.7262 -2.5589 0.0070 8 8 0.6121 -2.7457 -0.4441 9 7 2.4322 -3.5919 0.5079 10 6 3.7427 -3.4935 1.1791 11 6 3.8268 -4.7587 2.0780 12 6 3.1111 -5.7988 1.2022 13 6 2.5195 -6.9352 2.0505 14 6 3.7246 -7.9086 2.1435 15 7 4.4041 -7.8012 0.8381 16 6 5.2082 -8.7561 0.2753 17 1 5.6615 -8.5805 -0.6891 18 6 5.4402 -9.9502 0.9443 19 7 4.8878 -10.1642 2.1195 20 14 6.5366 -11.2532 0.1763 21 1 7.9421 -11.0301 0.6003 22 1 6.0928 -12.5985 0.6215 23 1 6.4463 -11.1666 -1.3034 24 6 4.0740 -6.4945 0.2409 25 6 2.0267 -5.0087 0.4708 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8903 0.5136 29 1 1.8375 2.1103 -0.0043 30 1 4.4044 -1.7239 0.0142 31 1 4.5464 -3.4947 0.4427 32 1 3.7887 -2.5918 1.7897 33 1 3.2984 -4.6101 3.0197 34 1 4.8641 -5.0432 2.2545 35 1 2.2296 -6.5761 3.0380 36 1 1.6762 -7.4039 1.5433 37 1 3.3760 -8.9284 2.3063 38 1 4.3968 -7.6060 2.9464 39 1 5.0503 -10.9984 2.5871 40 1 3.5949 -6.6378 -0.7276 41 1 4.9794 -5.8988 0.1244 42 1 1.0690 -5.1354 0.9755 43 1 1.9508 -5.3475 -0.5624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041185608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:25 Heat of formation + Delta-G solvation = 31.095552 kcal Electronic energy + Delta-G solvation = -24880.941545 eV Core-core repulsion = 21439.552616 eV Total energy + Delta-G solvation = -3441.388929 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.52256 -38.85828 -37.11636 -35.73030 -32.91344 -31.44761 -30.26414 -29.41374 -28.48921 -27.68752 -25.75643 -24.81356 -23.21084 -22.56770 -20.56339 -20.30770 -19.01095 -18.38803 -17.65568 -16.98432 -16.52169 -15.95163 -15.24849 -14.92887 -14.65838 -14.25859 -14.06000 -13.77512 -13.60556 -13.50800 -13.02130 -12.71075 -12.57885 -12.51418 -12.33370 -12.23668 -12.02333 -11.87645 -11.53849 -11.38430 -11.20362 -11.15689 -10.92116 -10.79808 -10.24240 -10.07058 -9.99487 -9.84776 -9.78400 -9.51127 -9.11275 -8.70347 -8.66263 -8.46155 -6.85755 -5.67498 -3.08956 0.58827 1.32368 1.67995 1.84267 2.95739 3.22332 3.38515 3.43846 3.45717 4.41946 4.46487 4.50484 4.68690 4.87660 4.96971 4.97269 5.13751 5.28162 5.31978 5.37935 5.43307 5.49256 5.51410 5.58396 5.74638 5.77348 5.80873 5.92897 6.00389 6.02322 6.14598 6.21686 6.25106 6.30985 6.33089 6.52292 6.61759 6.71419 6.80764 7.48547 7.52784 7.60259 7.83508 8.16477 8.33541 9.19799 9.80379 10.45410 11.36481 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.002833 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.466672 B = 9881.680884 C =10365.676834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.053 4.053 3 C -0.245 4.245 4 S 0.175 5.825 5 C -0.213 4.213 6 C -0.146 4.146 7 C 0.589 3.411 8 O -0.536 6.536 9 N -0.609 5.609 10 C 0.095 3.905 11 C -0.113 4.113 12 C -0.082 4.082 13 C -0.131 4.131 14 C 0.155 3.845 15 N -0.604 5.604 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.152 3.848 25 C 0.126 3.874 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.167 0.833 30 H 0.177 0.823 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.013 0.987 39 H 0.252 0.748 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.071 0.929 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 22.302 -0.526 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.064 4.064 3 C -0.380 4.380 4 S 0.442 5.558 5 C -0.351 4.351 6 C -0.164 4.164 7 C 0.377 3.623 8 O -0.415 6.415 9 N -0.343 5.343 10 C -0.027 4.027 11 C -0.151 4.151 12 C -0.083 4.083 13 C -0.170 4.170 14 C 0.030 3.970 15 N -0.330 5.330 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.026 3.974 25 C 0.004 3.996 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.185 0.815 30 H 0.194 0.806 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.090 0.910 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.138 22.926 -0.760 23.152 hybrid contribution -0.441 -1.552 -0.411 1.665 sum -3.579 21.374 -1.171 21.703 Atomic orbital electron populations 1.20510 0.88724 1.02831 1.03014 1.19845 0.97446 0.89898 0.99217 1.25268 0.96412 1.02501 1.13832 1.83012 1.05690 0.97142 1.69978 1.26033 1.00056 1.02688 1.06279 1.20153 0.92209 0.94147 1.09877 1.17224 0.84367 0.82775 0.77967 1.90778 1.18795 1.84580 1.47343 1.48531 1.21078 1.07218 1.57441 1.22725 0.84877 0.99683 0.95445 1.22696 1.02365 0.92724 0.97339 1.21559 0.95303 0.95006 0.96470 1.22874 1.00232 0.96121 0.97729 1.21961 0.88960 0.99516 0.86547 1.44620 1.56189 1.13304 1.18882 1.19071 1.20493 0.94101 1.01426 0.90548 1.24777 1.00814 0.98140 0.96877 1.69795 1.47573 1.25296 1.14401 0.86082 0.79995 0.81147 0.78340 1.21661 1.21643 1.20707 1.21126 0.94539 0.87778 0.93973 1.21925 0.98050 0.78498 1.01085 0.90659 0.90331 0.91810 0.81507 0.80575 0.91182 0.90535 0.90577 0.89128 0.91976 0.91790 0.87710 0.96897 0.93727 0.95673 0.95967 0.91037 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.38 36.00 0.34 -0.61 16 2 C -0.05 -0.59 6.00 -104.07 -0.62 -1.21 16 3 C -0.25 -2.16 10.91 28.86 0.31 -1.84 16 4 S 0.17 1.41 23.02 -107.50 -2.48 -1.07 16 5 C -0.21 -2.17 9.00 29.93 0.27 -1.90 16 6 C -0.15 -1.83 5.72 -104.63 -0.60 -2.43 16 7 C 0.59 8.96 7.55 -12.63 -0.10 8.86 16 8 O -0.54 -9.64 15.34 5.25 0.08 -9.56 16 9 N -0.61 -8.73 3.34 -172.05 -0.57 -9.31 16 10 C 0.10 1.14 5.08 -2.17 -0.01 1.13 16 11 C -0.11 -1.56 5.87 -25.10 -0.15 -1.71 16 12 C -0.08 -1.36 0.61 -154.02 -0.09 -1.45 16 13 C -0.13 -2.37 5.93 -25.23 -0.15 -2.52 16 14 C 0.15 3.62 5.83 -2.31 -0.01 3.60 16 15 N -0.60 -15.01 3.41 -170.41 -0.58 -15.59 16 16 C -0.22 -6.10 10.28 -15.06 -0.15 -6.26 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 20 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 C 0.15 3.04 6.39 -3.64 -0.02 3.02 16 25 C 0.13 1.97 6.14 -3.64 -0.02 1.95 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.96 6.79 -51.93 -0.35 0.61 16 28 H 0.06 0.50 8.13 -51.92 -0.42 0.08 16 29 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.18 1.60 5.36 -52.49 -0.28 1.32 16 31 H 0.07 0.78 7.08 -51.93 -0.37 0.41 16 32 H 0.08 0.78 6.88 -51.93 -0.36 0.42 16 33 H 0.08 0.98 7.82 -51.93 -0.41 0.58 16 34 H 0.09 1.32 7.94 -51.93 -0.41 0.91 16 35 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 36 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.11 2.80 5.89 -51.93 -0.31 2.49 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.52 7.44 -51.93 -0.39 0.14 16 41 H 0.02 0.44 7.78 -51.93 -0.40 0.04 16 42 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 43 H 0.07 1.17 7.42 -51.93 -0.39 0.79 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -31.36 348.98 -9.99 -41.35 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.13 Total: -0.26 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.11 Total: -1.76 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.60 Total: -50.79 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.48 Total: -1.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.36 -9.99 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041185608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.444 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds