Wall clock time and date at job start Tue Mar 31 2020 12:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33813 * 122.45135 * 2 1 4 4 S 1.70620 * 110.95697 * 179.69933 * 3 2 1 5 5 C 1.75829 * 91.56225 * 0.35709 * 4 3 2 6 6 C 1.46581 * 125.45770 * 179.90712 * 5 4 3 7 7 O 1.21705 * 119.99895 * 185.11451 * 6 5 4 8 8 N 1.34775 * 120.00191 * 5.11994 * 6 5 4 9 9 C 1.47558 * 125.67650 * 175.23191 * 8 6 5 10 10 C 1.55191 * 105.00896 * 203.84347 * 9 8 6 11 11 C 1.53711 * 101.44091 * 324.53084 * 10 9 8 12 12 C 1.53648 * 111.47136 * 154.96815 * 11 10 9 13 13 C 1.55187 * 101.42077 * 155.06410 * 12 11 10 14 14 N 1.47557 * 105.00183 * 324.50318 * 13 12 11 15 15 C 1.36946 * 125.67527 * 203.85530 * 14 13 12 16 16 H 1.07990 * 119.99663 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99675 * 0.02562 * 15 14 13 18 18 N 1.31622 * 120.00159 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99968 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46660 * 60.00078 * 19 17 15 21 21 H 1.48498 * 109.47347 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47286 * 300.00202 * 19 17 15 23 23 C 1.47405 * 108.65624 * 23.85923 * 14 13 12 24 24 C 1.47404 * 125.67439 * 355.21363 * 8 6 5 25 25 C 1.36647 * 109.08167 * 359.64946 * 5 4 3 26 26 H 1.09000 * 109.47408 * 270.02094 * 1 2 3 27 27 H 1.08997 * 109.46975 * 30.02285 * 1 2 3 28 28 H 1.08998 * 109.47088 * 150.02324 * 1 2 3 29 29 H 1.07999 * 124.52109 * 0.02562 * 3 2 1 30 30 H 1.09007 * 110.33631 * 322.72585 * 9 8 6 31 31 H 1.08996 * 110.33469 * 84.85681 * 9 8 6 32 32 H 1.08995 * 111.03383 * 82.54597 * 10 9 8 33 33 H 1.09001 * 111.03104 * 206.43704 * 10 9 8 34 34 H 1.08998 * 111.04030 * 273.10024 * 12 11 10 35 35 H 1.09003 * 111.03391 * 37.02909 * 12 11 10 36 36 H 1.08997 * 110.33604 * 205.62066 * 13 12 11 37 37 H 1.08997 * 110.42370 * 83.42918 * 13 12 11 38 38 H 0.97000 * 120.00232 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.98651 * 238.55158 * 23 14 13 40 40 H 1.08996 * 109.98930 * 117.23793 * 23 14 13 41 41 H 1.09009 * 109.98096 * 297.24677 * 24 8 6 42 42 H 1.08996 * 109.98787 * 58.50600 * 24 8 6 43 43 H 1.08001 * 123.34870 * 180.24597 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0084 5 6 3.5937 -0.9427 0.0009 6 6 4.6231 -1.9862 0.0014 7 8 4.3035 -3.1564 -0.0980 8 7 5.9236 -1.6499 0.1121 9 6 7.0504 -2.5958 0.2257 10 6 8.1805 -1.7927 0.9229 11 6 7.9688 -0.3906 0.3297 12 6 8.5138 0.7027 1.2617 13 6 8.7967 1.8505 0.2564 14 7 9.2572 1.1768 -0.9730 15 6 10.0382 1.7391 -1.9472 16 1 10.3221 1.1595 -2.8131 17 6 10.4648 3.0540 -1.8218 18 7 10.1191 3.7602 -0.7662 19 14 11.5307 3.8209 -3.1503 20 1 10.8000 3.8026 -4.4430 21 1 11.8483 5.2239 -2.7817 22 1 12.7906 3.0461 -3.2828 23 6 8.7366 -0.2023 -0.9781 24 6 6.4569 -0.2760 0.1393 25 6 2.2446 -1.1601 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.8025 2.1231 0.0004 30 1 6.7647 -3.4540 0.8342 31 1 7.3711 -2.9235 -0.7631 32 1 8.0444 -1.7840 2.0043 33 1 9.1615 -2.1867 0.6573 34 1 7.7646 1.0008 1.9951 35 1 9.4312 0.3771 1.7521 36 1 9.5754 2.5085 0.6421 37 1 7.8864 2.4169 0.0597 38 1 10.4175 4.6790 -0.6783 39 1 9.5623 -0.9120 -1.0307 40 1 8.0677 -0.3449 -1.8267 41 1 6.2370 0.2276 -0.8021 42 1 6.0177 0.2777 0.9691 43 1 1.8019 -2.1452 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041264145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:52 Heat of formation + Delta-G solvation = 28.405666 kcal Electronic energy + Delta-G solvation = -24974.765665 eV Core-core repulsion = 21533.260094 eV Total energy + Delta-G solvation = -3441.505571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35787 -38.86747 -37.77318 -35.62671 -32.77207 -31.53794 -30.40493 -29.50794 -28.14589 -27.75856 -25.83102 -25.04260 -23.54762 -22.10237 -20.34554 -19.88687 -19.33327 -18.63710 -17.89608 -16.90893 -16.11861 -15.95058 -15.63996 -14.87993 -14.56189 -14.27156 -14.08027 -13.87287 -13.52740 -13.39587 -13.25721 -12.95221 -12.49352 -12.29533 -12.20999 -12.10988 -12.07868 -12.03382 -11.56541 -11.55568 -11.28784 -10.95024 -10.87996 -10.68888 -10.28958 -10.12984 -10.05967 -9.94333 -9.80799 -9.53389 -9.01074 -8.68968 -8.58385 -8.40408 -6.87896 -5.69053 -3.10563 0.47990 1.47760 1.91789 2.26546 2.93996 3.19056 3.38464 3.43119 3.43928 4.38309 4.46293 4.64761 4.82766 4.87780 4.93208 5.04221 5.18563 5.26883 5.36874 5.41757 5.43858 5.45834 5.60167 5.66243 5.70363 5.73601 5.78631 5.84251 5.96247 5.98122 6.15021 6.20250 6.27112 6.28654 6.31585 6.47530 6.54034 6.66342 6.75799 7.43013 7.48065 7.58287 7.80818 8.10049 8.31385 9.18111 9.78591 10.43111 11.34869 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.003742 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.389208 B = 7481.294233 C = 8573.055849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.123 4.123 3 C -0.256 4.256 4 S 0.240 5.760 5 C -0.266 4.266 6 C 0.604 3.396 7 O -0.540 6.540 8 N -0.613 5.613 9 C 0.110 3.890 10 C -0.118 4.118 11 C -0.076 4.076 12 C -0.132 4.132 13 C 0.152 3.848 14 N -0.603 5.603 15 C -0.223 4.223 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.150 3.850 24 C 0.106 3.894 25 C -0.057 4.057 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.165 0.835 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.013 0.987 38 H 0.253 0.747 39 H 0.030 0.970 40 H 0.022 0.978 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.797 -7.045 5.476 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C -0.393 4.393 4 S 0.510 5.490 5 C -0.386 4.386 6 C 0.393 3.607 7 O -0.420 6.420 8 N -0.346 5.346 9 C -0.012 4.012 10 C -0.156 4.156 11 C -0.077 4.077 12 C -0.171 4.171 13 C 0.027 3.973 14 N -0.330 5.330 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.024 3.976 24 C -0.018 4.018 25 C -0.091 4.091 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.183 0.817 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.614 -6.530 5.360 15.181 hybrid contribution -0.933 -0.210 -0.794 1.243 sum -13.547 -6.739 4.565 15.804 Atomic orbital electron populations 1.20492 0.89739 1.02699 1.02207 1.18721 0.97729 0.91534 1.05586 1.25553 1.01008 1.03256 1.09520 1.83934 1.01413 0.97518 1.66121 1.24567 0.97781 0.97606 1.18643 1.16541 0.80308 0.87181 0.76631 1.90803 1.81130 1.18594 1.51437 1.48518 1.05268 1.08799 1.71985 1.22329 0.85384 0.92447 1.01026 1.22721 0.98476 0.94384 1.00067 1.21491 0.92166 0.95626 0.98464 1.22910 0.99850 0.96838 0.97472 1.22007 0.99303 0.91733 0.84271 1.44621 1.58771 1.07529 1.22047 1.19023 1.22549 0.94966 0.98622 0.90566 1.24760 1.00976 0.96522 0.98224 1.69778 1.49664 1.09385 1.28237 0.86168 0.80229 0.78304 0.80885 1.21233 1.21568 1.21170 1.21157 0.94740 0.89031 0.92625 1.22146 0.94635 0.82458 1.02520 1.20563 0.90912 0.99777 0.97857 0.91351 0.91622 0.91471 0.81749 0.90491 0.91037 0.90498 0.89209 0.92000 0.91306 0.87565 0.96889 0.93677 0.95200 0.95967 0.90070 0.90653 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.13 36.00 0.36 -0.37 16 2 C -0.12 -1.35 5.78 -106.46 -0.62 -1.97 16 3 C -0.26 -2.80 10.67 29.18 0.31 -2.49 16 4 S 0.24 3.02 18.48 -107.50 -1.99 1.03 16 5 C -0.27 -3.79 6.38 -36.79 -0.23 -4.02 16 6 C 0.60 9.82 7.81 -12.90 -0.10 9.72 16 7 O -0.54 -10.06 17.15 5.18 0.09 -9.97 16 8 N -0.61 -9.27 3.34 -172.42 -0.58 -9.84 16 9 C 0.11 1.49 6.86 -2.30 -0.02 1.47 16 10 C -0.12 -1.53 6.04 -25.20 -0.15 -1.68 16 11 C -0.08 -1.21 0.60 -153.99 -0.09 -1.30 16 12 C -0.13 -2.25 6.04 -25.24 -0.15 -2.40 16 13 C 0.15 3.42 5.85 -2.31 -0.01 3.41 16 14 N -0.60 -14.64 3.41 -170.41 -0.58 -15.22 16 15 C -0.22 -6.01 10.28 -15.06 -0.15 -6.17 16 16 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -25.89 10.09 55.49 0.56 -25.33 16 19 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 C 0.15 2.95 6.40 -3.64 -0.02 2.92 16 24 C 0.11 1.60 4.33 -3.64 -0.02 1.59 16 25 C -0.06 -0.73 9.80 -40.43 -0.40 -1.12 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.46 8.12 -51.93 -0.42 0.03 16 28 H 0.07 0.49 8.13 -51.93 -0.42 0.06 16 29 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.09 1.09 7.62 -51.93 -0.40 0.69 16 34 H 0.06 0.93 7.62 -51.93 -0.40 0.53 16 35 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.11 2.74 5.89 -51.93 -0.31 2.43 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.03 0.58 7.53 -51.93 -0.39 0.19 16 40 H 0.02 0.45 7.61 -51.93 -0.39 0.06 16 41 H 0.08 1.34 6.71 -51.92 -0.35 0.99 16 42 H 0.08 1.07 5.97 -51.67 -0.31 0.76 16 43 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -30.81 351.91 -9.90 -40.71 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.30 Total: -0.44 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.39 Total: -2.77 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.60 Total: -50.39 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.99 Total: 1.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.81 -9.90 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041264145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.115 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds