Wall clock time and date at job start Tue Mar 31 2020 12:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33813 * 122.45135 * 2 1 4 4 S 1.70620 * 110.95697 * 179.69933 * 3 2 1 5 5 C 1.75829 * 91.56225 * 0.35709 * 4 3 2 6 6 C 1.46581 * 125.45770 * 179.90712 * 5 4 3 7 7 O 1.21705 * 119.99895 * 185.11451 * 6 5 4 8 8 N 1.34775 * 120.00191 * 5.11994 * 6 5 4 9 9 C 1.47558 * 125.67650 * 175.23191 * 8 6 5 10 10 C 1.55191 * 105.00896 * 203.84347 * 9 8 6 11 11 C 1.53711 * 101.44091 * 324.53084 * 10 9 8 12 12 C 1.53648 * 111.47136 * 154.96815 * 11 10 9 13 13 C 1.55187 * 101.42077 * 155.06410 * 12 11 10 14 14 N 1.47557 * 105.00183 * 324.50318 * 13 12 11 15 15 C 1.36946 * 125.67527 * 203.85530 * 14 13 12 16 16 H 1.07990 * 119.99663 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99675 * 0.02562 * 15 14 13 18 18 N 1.31622 * 120.00159 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99968 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46660 * 60.00078 * 19 17 15 21 21 H 1.48498 * 109.47347 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47286 * 300.00202 * 19 17 15 23 23 C 1.47405 * 108.65624 * 23.85923 * 14 13 12 24 24 C 1.47404 * 125.67439 * 355.21363 * 8 6 5 25 25 C 1.36647 * 109.08167 * 359.64946 * 5 4 3 26 26 H 1.09000 * 109.47408 * 270.02094 * 1 2 3 27 27 H 1.08997 * 109.46975 * 30.02285 * 1 2 3 28 28 H 1.08998 * 109.47088 * 150.02324 * 1 2 3 29 29 H 1.07999 * 124.52109 * 0.02562 * 3 2 1 30 30 H 1.09007 * 110.33631 * 322.72585 * 9 8 6 31 31 H 1.08996 * 110.33469 * 84.85681 * 9 8 6 32 32 H 1.08995 * 111.03383 * 82.54597 * 10 9 8 33 33 H 1.09001 * 111.03104 * 206.43704 * 10 9 8 34 34 H 1.08998 * 111.04030 * 273.10024 * 12 11 10 35 35 H 1.09003 * 111.03391 * 37.02909 * 12 11 10 36 36 H 1.08997 * 110.33604 * 205.62066 * 13 12 11 37 37 H 1.08997 * 110.42370 * 83.42918 * 13 12 11 38 38 H 0.97000 * 120.00232 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.98651 * 238.55158 * 23 14 13 40 40 H 1.08996 * 109.98930 * 117.23793 * 23 14 13 41 41 H 1.09009 * 109.98096 * 297.24677 * 24 8 6 42 42 H 1.08996 * 109.98787 * 58.50600 * 24 8 6 43 43 H 1.08001 * 123.34870 * 180.24597 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0084 5 6 3.5937 -0.9427 0.0009 6 6 4.6231 -1.9862 0.0014 7 8 4.3035 -3.1564 -0.0980 8 7 5.9236 -1.6499 0.1121 9 6 7.0504 -2.5958 0.2257 10 6 8.1805 -1.7927 0.9229 11 6 7.9688 -0.3906 0.3297 12 6 8.5138 0.7027 1.2617 13 6 8.7967 1.8505 0.2564 14 7 9.2572 1.1768 -0.9730 15 6 10.0382 1.7391 -1.9472 16 1 10.3221 1.1595 -2.8131 17 6 10.4648 3.0540 -1.8218 18 7 10.1191 3.7602 -0.7662 19 14 11.5307 3.8209 -3.1503 20 1 10.8000 3.8026 -4.4430 21 1 11.8483 5.2239 -2.7817 22 1 12.7906 3.0461 -3.2828 23 6 8.7366 -0.2023 -0.9781 24 6 6.4569 -0.2760 0.1393 25 6 2.2446 -1.1601 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.8025 2.1231 0.0004 30 1 6.7647 -3.4540 0.8342 31 1 7.3711 -2.9235 -0.7631 32 1 8.0444 -1.7840 2.0043 33 1 9.1615 -2.1867 0.6573 34 1 7.7646 1.0008 1.9951 35 1 9.4312 0.3771 1.7521 36 1 9.5754 2.5085 0.6421 37 1 7.8864 2.4169 0.0597 38 1 10.4175 4.6790 -0.6783 39 1 9.5623 -0.9120 -1.0307 40 1 8.0677 -0.3449 -1.8267 41 1 6.2370 0.2276 -0.8021 42 1 6.0177 0.2777 0.9691 43 1 1.8019 -2.1452 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041264145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:52 Heat of formation + Delta-G solvation = 11.241929 kcal Electronic energy + Delta-G solvation = -24975.509940 eV Core-core repulsion = 21533.260094 eV Total energy + Delta-G solvation = -3442.249846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61416 -40.07323 -38.86021 -37.15041 -34.49223 -32.75567 -31.71750 -30.92197 -29.52916 -28.61869 -27.46105 -26.37548 -24.94011 -23.28713 -22.06898 -20.97760 -20.52365 -19.78334 -18.97829 -18.77761 -17.35072 -17.09575 -16.76608 -16.72835 -15.97856 -15.60300 -15.35121 -14.99717 -14.85711 -14.56019 -14.24150 -14.01999 -13.97861 -13.75096 -13.40079 -13.22427 -13.20103 -13.00671 -12.90996 -12.82025 -12.76587 -12.63905 -12.42308 -12.04245 -11.93713 -11.71570 -11.47671 -11.39080 -11.29174 -11.12415 -10.69097 -10.09695 -9.66057 -9.37810 -8.84024 -7.73888 -5.17149 -0.51880 0.48833 0.98445 1.30346 1.49005 1.50798 1.57162 1.79063 2.05175 2.51874 3.24657 3.33177 3.46966 3.60911 3.66873 3.88246 4.05749 4.16305 4.18660 4.22614 4.34487 4.38048 4.46742 4.65661 4.67559 4.67969 4.73949 4.79754 4.86408 4.88381 4.91905 5.05234 5.05336 5.10344 5.18115 5.24322 5.32159 5.39393 5.47945 5.50052 5.69962 5.87208 6.26425 6.35989 6.88765 7.15324 7.81963 8.45478 9.27273 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.003742 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.389208 B = 7481.294233 C = 8573.055849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.127 4.127 3 C -0.244 4.244 4 S 0.223 5.777 5 C -0.295 4.295 6 C 0.601 3.399 7 O -0.573 6.573 8 N -0.613 5.613 9 C 0.106 3.894 10 C -0.104 4.104 11 C -0.069 4.069 12 C -0.114 4.114 13 C 0.154 3.846 14 N -0.624 5.624 15 C -0.239 4.239 16 H 0.076 0.924 17 C -0.061 4.061 18 N -0.944 5.944 19 Si 0.974 3.026 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.278 1.278 23 C 0.149 3.851 24 C 0.114 3.886 25 C -0.053 4.053 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.191 0.809 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.072 0.928 37 H -0.009 1.009 38 H 0.247 0.753 39 H 0.037 0.963 40 H 0.013 0.987 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 -7.504 6.131 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C -0.382 4.382 4 S 0.494 5.506 5 C -0.415 4.415 6 C 0.391 3.609 7 O -0.455 6.455 8 N -0.345 5.345 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.070 4.070 12 C -0.153 4.153 13 C 0.029 3.971 14 N -0.351 5.351 15 C -0.368 4.368 16 H 0.094 0.906 17 C -0.254 4.254 18 N -0.594 5.594 19 Si 0.803 3.197 20 H -0.208 1.208 21 H -0.219 1.219 22 H -0.204 1.204 23 C 0.024 3.976 24 C -0.009 4.009 25 C -0.088 4.088 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.208 0.792 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.009 0.991 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.031 0.969 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.655 -7.008 6.018 16.486 hybrid contribution -0.683 -0.054 -1.042 1.247 sum -14.338 -7.063 4.976 16.740 Atomic orbital electron populations 1.20572 0.87333 1.03763 1.03321 1.19017 0.99383 0.90705 1.04848 1.25853 0.99711 1.04524 1.08086 1.83935 1.03292 0.96688 1.66705 1.24506 0.97950 0.97932 1.21100 1.16830 0.80834 0.87202 0.76014 1.90771 1.81638 1.19892 1.53215 1.48567 1.05435 1.08987 1.71481 1.22455 0.85104 0.92662 1.01303 1.22703 0.98845 0.91615 1.01044 1.21363 0.92065 0.97312 0.96303 1.22755 1.01162 0.94695 0.96682 1.21802 0.96982 0.93187 0.85151 1.44903 1.58634 1.09400 1.22127 1.19359 1.22696 0.95402 0.99336 0.90582 1.25513 1.02530 0.97107 1.00273 1.70025 1.50644 1.09133 1.29608 0.85219 0.78825 0.77115 0.78558 1.20849 1.21909 1.20432 1.21284 0.94990 0.86876 0.94424 1.22012 0.94145 0.82587 1.02204 1.20823 0.90646 1.00722 0.96617 0.90129 0.90251 0.90797 0.79225 0.89542 0.91241 0.88337 0.87923 0.89311 0.90413 0.91008 0.99060 0.94356 0.94527 0.96934 0.91803 0.89411 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 10.13 71.23 0.72 -0.47 16 2 C -0.13 -2.53 5.78 -21.05 -0.12 -2.66 16 3 C -0.24 -4.83 10.67 66.81 0.71 -4.12 16 4 S 0.22 5.45 18.48 -56.49 -1.04 4.41 16 5 C -0.29 -8.27 6.38 24.08 0.15 -8.11 16 6 C 0.60 19.36 7.81 86.42 0.67 20.03 16 7 O -0.57 -21.35 17.15 -4.36 -0.07 -21.43 16 8 N -0.61 -18.00 3.34 -817.64 -2.73 -20.73 16 9 C 0.11 2.70 6.86 86.93 0.60 3.29 16 10 C -0.10 -2.41 6.04 31.59 0.19 -2.22 16 11 C -0.07 -2.10 0.60 -51.85 -0.03 -2.13 16 12 C -0.11 -3.73 6.04 31.56 0.19 -3.53 16 13 C 0.15 7.03 5.85 86.93 0.51 7.54 16 14 N -0.62 -30.68 3.41 -693.06 -2.36 -33.04 16 15 C -0.24 -13.06 10.28 84.03 0.86 -12.20 16 16 H 0.08 4.03 7.83 -2.92 -0.02 4.01 16 17 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 18 N -0.94 -54.35 10.09 21.65 0.22 -54.13 16 19 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.15 5.80 6.40 86.15 0.55 6.35 16 24 C 0.11 3.36 4.33 86.15 0.37 3.73 16 25 C -0.05 -1.30 9.80 21.72 0.21 -1.09 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 28 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 29 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.09 2.06 8.09 -2.38 -0.02 2.04 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 1.93 8.07 -2.39 -0.02 1.91 16 33 H 0.10 2.17 7.62 -2.39 -0.02 2.15 16 34 H 0.09 2.44 7.62 -2.39 -0.02 2.42 16 35 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 36 H 0.07 3.81 5.89 -2.39 -0.01 3.80 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 39 H 0.04 1.38 7.53 -2.39 -0.02 1.36 16 40 H 0.01 0.52 7.61 -2.39 -0.02 0.50 16 41 H 0.06 2.13 6.71 -2.38 -0.02 2.11 16 42 H 0.09 2.38 5.97 -2.55 -0.02 2.37 16 43 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -67.89 351.91 3.10 -64.78 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.01 Total: 11.82 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.06 Total: 1.50 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -4.88 Total: -107.90 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.43 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.04 Total: 4.41 kcal Total: -67.89 3.10 -64.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041264145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.027 kcal (2) G-P(sol) polarization free energy of solvation -67.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds