Wall clock time and date at job start Tue Mar 31 2020 12:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33816 * 122.45117 * 2 1 4 4 S 1.70617 * 110.95712 * 179.78383 * 3 2 1 5 5 C 1.75827 * 91.56145 * 0.30691 * 4 3 2 6 6 C 1.46589 * 125.45655 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00091 * 172.86476 * 6 5 4 8 8 N 1.34770 * 119.99877 * 352.85934 * 6 5 4 9 9 C 1.48272 * 127.72483 * 174.00080 * 8 6 5 10 10 C 1.54758 * 104.68138 * 141.28627 * 9 8 6 11 11 C 1.52884 * 104.40145 * 23.63343 * 10 9 8 12 12 C 1.53709 * 111.74856 * 237.42300 * 11 10 9 13 13 C 1.54582 * 102.95173 * 273.45490 * 12 11 10 14 14 N 1.47138 * 107.33059 * 339.03481 * 13 12 11 15 15 C 1.36932 * 125.60198 * 179.09188 * 14 13 12 16 16 H 1.08004 * 119.99696 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00437 * 359.97438 * 15 14 13 18 18 N 1.31618 * 119.99574 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00162 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47009 * 89.99829 * 19 17 15 21 21 H 1.48497 * 109.47123 * 210.00062 * 19 17 15 22 22 H 1.48507 * 109.47133 * 330.00346 * 19 17 15 23 23 C 1.47707 * 108.78750 * 359.07253 * 14 13 12 24 24 C 1.48490 * 127.72525 * 354.00012 * 8 6 5 25 25 C 1.36645 * 109.08451 * 359.69599 * 5 4 3 26 26 H 1.08998 * 109.46993 * 269.97478 * 1 2 3 27 27 H 1.08994 * 109.47565 * 29.97668 * 1 2 3 28 28 H 1.09000 * 109.47387 * 149.98180 * 1 2 3 29 29 H 1.08004 * 124.52162 * 0.02562 * 3 2 1 30 30 H 1.09007 * 110.39606 * 22.48549 * 9 8 6 31 31 H 1.09001 * 110.49814 * 260.13877 * 9 8 6 32 32 H 1.08997 * 110.44336 * 264.90742 * 10 9 8 33 33 H 1.08993 * 110.55063 * 142.42164 * 10 9 8 34 34 H 1.09001 * 110.74833 * 155.03497 * 12 11 10 35 35 H 1.09000 * 110.74797 * 31.87161 * 12 11 10 36 36 H 1.08997 * 109.87553 * 98.47322 * 13 12 11 37 37 H 1.08999 * 109.86820 * 219.46075 * 13 12 11 38 38 H 0.97007 * 119.99438 * 180.02562 * 18 17 15 39 39 H 1.08995 * 110.38915 * 141.39711 * 23 14 13 40 40 H 1.09007 * 110.38871 * 263.77585 * 23 14 13 41 41 H 1.09001 * 110.47121 * 99.56679 * 24 8 6 42 42 H 1.09006 * 110.47512 * 336.96011 * 24 8 6 43 43 H 1.07999 * 123.35008 * 180.25085 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0060 5 6 3.5937 -0.9427 -0.0009 6 6 4.6231 -1.9862 -0.0004 7 8 4.3055 -3.1543 0.1255 8 7 5.9213 -1.6521 -0.1394 9 6 7.1028 -2.5426 -0.0414 10 6 8.0640 -2.0420 -1.1462 11 6 7.6534 -0.5875 -1.3771 12 6 7.2634 -0.3314 -2.8416 13 6 8.6194 -0.0083 -3.5098 14 7 9.5444 0.4096 -2.4446 15 6 10.8552 0.7643 -2.6209 16 1 11.4541 1.0579 -1.7714 17 6 11.4142 0.7466 -3.8913 18 7 10.6842 0.3894 -4.9266 19 14 13.2026 1.2298 -4.1317 20 1 14.0619 0.0251 -4.0071 21 1 13.3774 1.8253 -5.4807 22 1 13.5901 2.2232 -3.0980 23 6 8.8264 0.3841 -1.1540 24 6 6.4885 -0.3099 -0.4250 25 6 2.2446 -1.1600 -0.0004 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 1.8025 2.1232 0.0004 30 1 6.8153 -3.5773 -0.2283 31 1 7.5701 -2.4502 0.9390 32 1 7.9320 -2.6242 -2.0582 33 1 9.0984 -2.0965 -0.8070 34 1 6.5836 0.5172 -2.9175 35 1 6.8174 -1.2222 -3.2840 36 1 9.0069 -0.8959 -4.0099 37 1 8.4937 0.7984 -4.2319 38 1 11.0750 0.3766 -5.8144 39 1 9.4796 0.0150 -0.3634 40 1 8.4540 1.3783 -0.9069 41 1 6.8487 0.1550 0.4927 42 1 5.7443 0.3237 -0.9078 43 1 1.8019 -2.1451 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041264146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:55 Heat of formation + Delta-G solvation = 31.054430 kcal Electronic energy + Delta-G solvation = -24853.541889 eV Core-core repulsion = 21412.151177 eV Total energy + Delta-G solvation = -3441.390712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27935 -38.88066 -37.81210 -35.65341 -32.65752 -31.52642 -30.21849 -29.45763 -28.49915 -27.90333 -25.78963 -24.88930 -23.45663 -22.29735 -20.28840 -19.97523 -19.33120 -18.60917 -17.96299 -16.90494 -16.08783 -15.84426 -15.72126 -14.74923 -14.57880 -14.37156 -14.07140 -13.92033 -13.79901 -13.36828 -13.31011 -12.85055 -12.65409 -12.44856 -12.27318 -12.17138 -12.02584 -11.97802 -11.56085 -11.44912 -11.07294 -10.95392 -10.81437 -10.63805 -10.23455 -10.14157 -10.00439 -9.95811 -9.77534 -9.65682 -9.06913 -8.65255 -8.61239 -8.52829 -6.85390 -5.72937 -3.06606 0.38867 1.35833 1.78721 2.20059 2.85826 3.14668 3.38667 3.43840 3.45741 4.36990 4.46985 4.68031 4.76310 4.88579 4.95786 5.03178 5.11167 5.32520 5.35182 5.36544 5.41666 5.47550 5.53701 5.63736 5.65304 5.70493 5.81338 5.86334 5.90770 5.97383 6.14326 6.21838 6.24660 6.37590 6.39910 6.46936 6.57997 6.66977 6.78553 7.47457 7.54331 7.60794 7.81298 8.06240 8.23286 9.19864 9.80073 10.45864 11.38531 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.003134 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.807179 B = 8932.309676 C = 9502.683519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.120 4.120 3 C -0.255 4.255 4 S 0.226 5.774 5 C -0.260 4.260 6 C 0.610 3.390 7 O -0.538 6.538 8 N -0.618 5.618 9 C 0.107 3.893 10 C -0.110 4.110 11 C -0.083 4.083 12 C -0.133 4.133 13 C 0.180 3.820 14 N -0.603 5.603 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.151 3.849 24 C 0.108 3.892 25 C -0.055 4.055 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.165 0.835 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.252 0.748 39 H 0.042 0.958 40 H 0.021 0.979 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.863 0.161 10.883 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C -0.392 4.392 4 S 0.496 5.504 5 C -0.380 4.380 6 C 0.399 3.601 7 O -0.417 6.417 8 N -0.351 5.351 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.085 4.085 12 C -0.171 4.171 13 C 0.056 3.944 14 N -0.330 5.330 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.024 3.976 24 C -0.017 4.017 25 C -0.089 4.089 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.182 0.818 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.665 0.473 10.788 19.026 hybrid contribution -0.435 -0.373 -0.312 0.652 sum -16.100 0.100 10.475 19.208 Atomic orbital electron populations 1.20503 0.89661 1.02797 1.02264 1.18738 0.97789 0.91540 1.05263 1.25543 1.00850 1.03211 1.09581 1.83540 1.01969 0.98008 1.66922 1.24540 0.97773 0.97288 1.18434 1.16477 0.80036 0.87063 0.76523 1.90813 1.80794 1.18586 1.51536 1.48929 1.04730 1.11483 1.69968 1.22514 0.84475 0.95096 0.99394 1.22334 0.99241 0.94779 0.98446 1.21696 0.94735 0.96256 0.95767 1.22859 1.00165 1.00250 0.93814 1.21187 0.84207 0.99209 0.89817 1.44513 1.08248 1.79309 1.00882 1.19033 0.85055 1.38272 0.93275 0.90443 1.24795 0.98237 1.01763 0.95600 1.69967 1.34678 1.53737 0.98463 0.86135 0.84539 0.78038 0.77124 1.21632 1.21724 1.20720 1.21450 0.90904 0.94709 0.90491 1.22547 0.95578 0.83994 0.99535 1.20602 0.90942 0.99878 0.97482 0.91294 0.91578 0.91386 0.81765 0.89957 0.90932 0.90645 0.89474 0.92437 0.92120 0.93583 0.93944 0.93769 0.93942 0.96146 0.90141 0.90071 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.13 36.00 0.36 -0.30 16 2 C -0.12 -1.20 5.78 -106.46 -0.62 -1.82 16 3 C -0.25 -2.42 10.67 29.18 0.31 -2.11 16 4 S 0.23 2.40 18.83 -107.50 -2.02 0.38 16 5 C -0.26 -3.43 6.36 -36.79 -0.23 -3.67 16 6 C 0.61 9.48 7.86 -12.90 -0.10 9.38 16 7 O -0.54 -9.85 17.10 5.19 0.09 -9.76 16 8 N -0.62 -8.87 3.33 -171.11 -0.57 -9.44 16 9 C 0.11 1.45 7.10 -2.14 -0.02 1.44 16 10 C -0.11 -1.67 6.28 -25.86 -0.16 -1.83 16 11 C -0.08 -1.32 0.82 -153.72 -0.13 -1.45 16 12 C -0.13 -2.38 5.83 -25.53 -0.15 -2.53 16 13 C 0.18 4.22 5.33 -2.86 -0.02 4.20 16 14 N -0.60 -14.58 3.41 -170.20 -0.58 -15.16 16 15 C -0.23 -6.12 10.28 -15.06 -0.15 -6.28 16 16 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -26.53 10.30 55.49 0.57 -25.96 16 19 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.15 2.85 6.07 -2.89 -0.02 2.83 16 24 C 0.11 1.44 5.04 -2.95 -0.01 1.43 16 25 C -0.06 -0.66 9.80 -40.44 -0.40 -1.05 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 30 H 0.08 1.14 7.85 -51.92 -0.41 0.73 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 33 H 0.09 1.36 7.55 -51.93 -0.39 0.96 16 34 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 35 H 0.06 1.06 7.71 -51.93 -0.40 0.66 16 36 H 0.05 1.20 7.39 -51.93 -0.38 0.82 16 37 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 38 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.04 0.77 7.76 -51.93 -0.40 0.37 16 40 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 41 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 42 H 0.08 1.05 4.35 -30.33 -0.13 0.92 16 43 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -31.48 352.82 -9.85 -41.33 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.21 Total: -1.29 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.42 Total: -2.07 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.58 Total: -50.56 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.02 Total: 0.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.48 -9.85 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041264146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.385 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds