Wall clock time and date at job start Tue Mar 31 2020 12:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33816 * 122.45117 * 2 1 4 4 S 1.70617 * 110.95712 * 179.78383 * 3 2 1 5 5 C 1.75827 * 91.56145 * 0.30691 * 4 3 2 6 6 C 1.46589 * 125.45655 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00091 * 172.86476 * 6 5 4 8 8 N 1.34770 * 119.99877 * 352.85934 * 6 5 4 9 9 C 1.48272 * 127.72483 * 174.00080 * 8 6 5 10 10 C 1.54758 * 104.68138 * 141.28627 * 9 8 6 11 11 C 1.52884 * 104.40145 * 23.63343 * 10 9 8 12 12 C 1.53709 * 111.74856 * 237.42300 * 11 10 9 13 13 C 1.54582 * 102.95173 * 273.45490 * 12 11 10 14 14 N 1.47138 * 107.33059 * 339.03481 * 13 12 11 15 15 C 1.36932 * 125.60198 * 179.09188 * 14 13 12 16 16 H 1.08004 * 119.99696 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00437 * 359.97438 * 15 14 13 18 18 N 1.31618 * 119.99574 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00162 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47009 * 89.99829 * 19 17 15 21 21 H 1.48497 * 109.47123 * 210.00062 * 19 17 15 22 22 H 1.48507 * 109.47133 * 330.00346 * 19 17 15 23 23 C 1.47707 * 108.78750 * 359.07253 * 14 13 12 24 24 C 1.48490 * 127.72525 * 354.00012 * 8 6 5 25 25 C 1.36645 * 109.08451 * 359.69599 * 5 4 3 26 26 H 1.08998 * 109.46993 * 269.97478 * 1 2 3 27 27 H 1.08994 * 109.47565 * 29.97668 * 1 2 3 28 28 H 1.09000 * 109.47387 * 149.98180 * 1 2 3 29 29 H 1.08004 * 124.52162 * 0.02562 * 3 2 1 30 30 H 1.09007 * 110.39606 * 22.48549 * 9 8 6 31 31 H 1.09001 * 110.49814 * 260.13877 * 9 8 6 32 32 H 1.08997 * 110.44336 * 264.90742 * 10 9 8 33 33 H 1.08993 * 110.55063 * 142.42164 * 10 9 8 34 34 H 1.09001 * 110.74833 * 155.03497 * 12 11 10 35 35 H 1.09000 * 110.74797 * 31.87161 * 12 11 10 36 36 H 1.08997 * 109.87553 * 98.47322 * 13 12 11 37 37 H 1.08999 * 109.86820 * 219.46075 * 13 12 11 38 38 H 0.97007 * 119.99438 * 180.02562 * 18 17 15 39 39 H 1.08995 * 110.38915 * 141.39711 * 23 14 13 40 40 H 1.09007 * 110.38871 * 263.77585 * 23 14 13 41 41 H 1.09001 * 110.47121 * 99.56679 * 24 8 6 42 42 H 1.09006 * 110.47512 * 336.96011 * 24 8 6 43 43 H 1.07999 * 123.35008 * 180.25085 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0060 5 6 3.5937 -0.9427 -0.0009 6 6 4.6231 -1.9862 -0.0004 7 8 4.3055 -3.1543 0.1255 8 7 5.9213 -1.6521 -0.1394 9 6 7.1028 -2.5426 -0.0414 10 6 8.0640 -2.0420 -1.1462 11 6 7.6534 -0.5875 -1.3771 12 6 7.2634 -0.3314 -2.8416 13 6 8.6194 -0.0083 -3.5098 14 7 9.5444 0.4096 -2.4446 15 6 10.8552 0.7643 -2.6209 16 1 11.4541 1.0579 -1.7714 17 6 11.4142 0.7466 -3.8913 18 7 10.6842 0.3894 -4.9266 19 14 13.2026 1.2298 -4.1317 20 1 14.0619 0.0251 -4.0071 21 1 13.3774 1.8253 -5.4807 22 1 13.5901 2.2232 -3.0980 23 6 8.8264 0.3841 -1.1540 24 6 6.4885 -0.3099 -0.4250 25 6 2.2446 -1.1600 -0.0004 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 1.8025 2.1232 0.0004 30 1 6.8153 -3.5773 -0.2283 31 1 7.5701 -2.4502 0.9390 32 1 7.9320 -2.6242 -2.0582 33 1 9.0984 -2.0965 -0.8070 34 1 6.5836 0.5172 -2.9175 35 1 6.8174 -1.2222 -3.2840 36 1 9.0069 -0.8959 -4.0099 37 1 8.4937 0.7984 -4.2319 38 1 11.0750 0.3766 -5.8144 39 1 9.4796 0.0150 -0.3634 40 1 8.4540 1.3783 -0.9069 41 1 6.8487 0.1550 0.4927 42 1 5.7443 0.3237 -0.9078 43 1 1.8019 -2.1451 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041264146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:54 Heat of formation + Delta-G solvation = 12.946441 kcal Electronic energy + Delta-G solvation = -24854.327110 eV Core-core repulsion = 21412.151177 eV Total energy + Delta-G solvation = -3442.175933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50931 -40.03165 -38.83207 -37.16422 -34.42508 -32.62064 -31.59770 -30.82765 -29.98854 -28.61388 -27.34353 -26.21416 -24.87762 -23.44410 -22.10921 -20.96850 -20.42215 -19.76799 -18.95619 -18.76712 -17.13408 -17.03196 -16.75292 -16.69025 -15.83659 -15.64902 -15.58711 -15.12031 -14.71813 -14.46587 -14.34767 -14.03458 -13.95501 -13.85810 -13.43465 -13.23093 -13.16360 -12.93004 -12.83334 -12.80089 -12.75156 -12.57716 -12.34154 -12.00995 -11.87633 -11.73259 -11.44637 -11.40016 -11.30278 -11.18770 -10.66093 -10.06374 -9.67168 -9.31413 -8.84283 -7.80780 -5.15316 -0.49551 0.50616 0.97759 1.34441 1.48760 1.49822 1.58346 1.76256 2.09105 2.52698 3.30917 3.35413 3.44263 3.62205 3.75368 3.91123 4.08974 4.19783 4.20695 4.28194 4.31120 4.40946 4.43787 4.58486 4.64322 4.70670 4.75215 4.79522 4.87435 4.89675 4.96029 4.99540 5.05418 5.07689 5.17855 5.29766 5.38410 5.42099 5.49918 5.51070 5.68978 5.80805 6.22939 6.34920 6.92054 7.14155 7.82176 8.46620 9.29633 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.003134 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.807179 B = 8932.309676 C = 9502.683519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.131 4.131 3 C -0.243 4.243 4 S 0.245 5.755 5 C -0.296 4.296 6 C 0.607 3.393 7 O -0.577 6.577 8 N -0.619 5.619 9 C 0.112 3.888 10 C -0.107 4.107 11 C -0.073 4.073 12 C -0.119 4.119 13 C 0.192 3.808 14 N -0.623 5.623 15 C -0.233 4.233 16 H 0.087 0.913 17 C -0.069 4.069 18 N -0.953 5.953 19 Si 0.975 3.025 20 H -0.289 1.289 21 H -0.299 1.299 22 H -0.267 1.267 23 C 0.148 3.852 24 C 0.115 3.885 25 C -0.056 4.056 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.006 0.994 37 H 0.005 0.995 38 H 0.244 0.756 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.073 1.719 12.929 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C -0.380 4.380 4 S 0.515 5.485 5 C -0.416 4.416 6 C 0.398 3.602 7 O -0.460 6.460 8 N -0.351 5.351 9 C -0.009 4.009 10 C -0.145 4.145 11 C -0.074 4.074 12 C -0.157 4.157 13 C 0.066 3.934 14 N -0.350 5.350 15 C -0.362 4.362 16 H 0.104 0.896 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.804 3.196 20 H -0.216 1.216 21 H -0.226 1.226 22 H -0.191 1.191 23 C 0.023 3.977 24 C -0.008 4.008 25 C -0.090 4.090 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.210 0.790 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.025 0.975 37 H 0.023 0.977 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.873 2.053 12.878 21.325 hybrid contribution -0.115 -0.818 -0.927 1.242 sum -16.988 1.234 11.951 20.808 Atomic orbital electron populations 1.20567 0.87663 1.03679 1.03204 1.18974 0.99251 0.90863 1.05193 1.25902 1.00059 1.04391 1.07620 1.83303 1.02988 0.95689 1.66551 1.24449 0.97624 0.98409 1.21131 1.16821 0.80531 0.87116 0.75765 1.90781 1.81381 1.20298 1.53518 1.48952 1.04671 1.11887 1.69568 1.22514 0.83944 0.94691 0.99791 1.22258 0.99566 0.94207 0.98478 1.21565 0.94862 0.96078 0.94930 1.22700 0.97232 1.01050 0.94767 1.20864 0.86787 0.96049 0.89656 1.44785 1.07989 1.79037 1.03145 1.19460 0.86465 1.36871 0.93453 0.89552 1.25609 1.02119 1.02775 0.95626 1.70198 1.36114 1.55495 0.98446 0.85127 0.80017 0.77765 0.76727 1.21577 1.22579 1.19148 1.21658 0.91532 0.96141 0.88367 1.22527 0.94542 0.83797 0.99942 1.20808 0.90916 1.00647 0.96668 0.90277 0.90128 0.91151 0.78954 0.90566 0.88537 0.92223 0.89774 0.90714 0.91756 0.97527 0.97716 0.94681 0.92768 0.94538 0.87537 0.89191 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 10.13 71.23 0.72 -0.34 16 2 C -0.13 -2.27 5.78 -21.05 -0.12 -2.39 16 3 C -0.24 -3.76 10.67 66.81 0.71 -3.05 16 4 S 0.24 4.50 18.83 -56.49 -1.06 3.44 16 5 C -0.30 -7.39 6.36 24.08 0.15 -7.24 16 6 C 0.61 18.36 7.86 86.42 0.68 19.04 16 7 O -0.58 -21.25 17.10 -4.35 -0.07 -21.32 16 8 N -0.62 -16.72 3.33 -813.50 -2.71 -19.43 16 9 C 0.11 2.88 7.10 86.64 0.61 3.50 16 10 C -0.11 -3.16 6.28 31.16 0.20 -2.96 16 11 C -0.07 -2.21 0.82 -51.67 -0.04 -2.25 16 12 C -0.12 -4.24 5.83 31.37 0.18 -4.06 16 13 C 0.19 9.24 5.33 86.80 0.46 9.70 16 14 N -0.62 -30.21 3.41 -692.38 -2.36 -32.57 16 15 C -0.23 -12.54 10.28 84.03 0.86 -11.68 16 16 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 17 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 18 N -0.95 -56.98 10.30 21.65 0.22 -56.75 16 19 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C 0.15 5.31 6.07 86.46 0.52 5.83 16 24 C 0.12 2.78 5.04 85.99 0.43 3.21 16 25 C -0.06 -1.25 9.80 21.72 0.21 -1.04 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 28 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.08 2.07 7.85 -2.38 -0.02 2.05 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.95 7.51 -2.39 -0.02 1.93 16 33 H 0.08 2.55 7.55 -2.39 -0.02 2.53 16 34 H 0.07 2.40 7.73 -2.39 -0.02 2.38 16 35 H 0.06 2.24 7.71 -2.39 -0.02 2.22 16 36 H 0.01 0.36 7.39 -2.39 -0.02 0.34 16 37 H 0.00 0.25 7.49 -2.39 -0.02 0.24 16 38 H 0.24 14.32 8.31 -92.70 -0.77 13.55 16 39 H 0.05 1.83 7.76 -2.39 -0.02 1.82 16 40 H 0.04 1.23 8.06 -2.38 -0.02 1.21 16 41 H 0.11 2.10 7.95 -2.39 -0.02 2.08 16 42 H 0.09 2.05 4.35 -16.11 -0.07 1.98 16 43 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -70.40 352.82 3.05 -67.35 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.95 Total: 9.26 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 6.06 Total: 2.91 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -4.85 Total: -108.75 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.07 Total: -21.32 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.06 Total: 3.44 kcal Total: -70.40 3.05 -67.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041264146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.293 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds