Wall clock time and date at job start Tue Mar 31 2020 12:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32778 * 123.45331 * 2 1 4 4 S 1.75511 * 110.57287 * 180.02562 * 3 2 1 5 5 C 1.70442 * 92.44559 * 359.80329 * 4 3 2 6 6 C 1.36018 * 110.81748 * 0.34527 * 5 4 3 7 7 C 1.47186 * 123.45684 * 179.85945 * 6 5 4 8 8 O 1.21639 * 119.99589 * 126.88190 * 7 6 5 9 9 N 1.34777 * 120.00524 * 306.87738 * 7 6 5 10 10 C 1.47151 * 121.21006 * 354.07532 * 9 7 6 11 11 C 1.52844 * 107.97408 * 237.29955 * 10 9 7 12 12 C 1.53086 * 110.57311 * 302.64784 * 11 10 9 13 13 H 1.08996 * 113.06357 * 289.00939 * 12 11 10 14 14 C 1.56031 * 106.39503 * 164.57997 * 12 11 10 15 15 C 1.54501 * 102.61467 * 281.61913 * 14 12 11 16 16 N 1.47432 * 107.14781 * 337.15440 * 15 14 12 17 17 C 1.36931 * 126.06086 * 178.39264 * 16 15 14 18 18 H 1.08005 * 120.00820 * 185.03055 * 17 16 15 19 19 C 1.38824 * 120.00001 * 5.03243 * 17 16 15 20 20 N 1.31618 * 119.99429 * 354.87041 * 19 17 16 21 21 Si 1.86798 * 120.00203 * 174.87101 * 19 17 16 22 22 H 1.48495 * 109.47260 * 94.99684 * 21 19 17 23 23 H 1.48494 * 109.47200 * 214.99875 * 21 19 17 24 24 H 1.48506 * 109.47094 * 334.99794 * 21 19 17 25 25 C 1.46472 * 107.88056 * 358.37648 * 16 15 14 26 26 H 1.09002 * 108.41786 * 270.76298 * 25 16 15 27 27 C 1.46754 * 121.21652 * 174.08942 * 9 7 6 28 28 H 1.09001 * 109.46950 * 269.97540 * 1 2 3 29 29 H 1.09001 * 109.47630 * 29.97939 * 1 2 3 30 30 H 1.09006 * 109.46682 * 149.98244 * 1 2 3 31 31 H 1.07997 * 124.71482 * 0.02562 * 3 2 1 32 32 H 1.08002 * 124.59656 * 180.22756 * 5 4 3 33 33 H 1.08999 * 109.76147 * 356.91326 * 10 9 7 34 34 H 1.08992 * 109.76355 * 117.68244 * 10 9 7 35 35 H 1.09002 * 109.25446 * 62.93441 * 11 10 9 36 36 H 1.09006 * 109.25494 * 182.36775 * 11 10 9 37 37 H 1.09002 * 110.78165 * 163.33682 * 14 12 11 38 38 H 1.09002 * 110.93812 * 39.98010 * 14 12 11 39 39 H 1.08994 * 109.89707 * 217.77491 * 15 14 12 40 40 H 1.09000 * 109.90041 * 96.53668 * 15 14 12 41 41 H 0.97004 * 119.99342 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.23013 * 247.78612 * 27 9 7 43 43 H 1.09005 * 109.22784 * 7.19349 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1078 0.0000 4 16 3.9499 0.7166 -0.0007 5 6 3.6412 -0.9597 0.0048 6 6 2.3033 -1.2048 -0.0006 7 6 1.7264 -2.5589 -0.0007 8 8 0.9028 -2.8691 0.8390 9 7 2.1107 -3.4552 -0.9310 10 6 3.0055 -3.0724 -2.0347 11 6 2.2945 -3.3897 -3.3500 12 6 1.9148 -4.8714 -3.4125 13 1 2.7757 -5.5278 -3.5385 14 6 0.8724 -5.0107 -4.5651 15 6 -0.4293 -4.5023 -3.9062 16 7 -0.2664 -4.6534 -2.4487 17 6 -1.1787 -4.2914 -1.4939 18 1 -0.9256 -4.3715 -0.4470 19 6 -2.4293 -3.8215 -1.8715 20 7 -2.7028 -3.6282 -3.1443 21 14 -3.7237 -3.4635 -0.5731 22 1 -3.6818 -2.0226 -0.2165 23 1 -5.0672 -3.8025 -1.1069 24 1 -3.4509 -4.2808 0.6364 25 6 1.0440 -5.2598 -2.2031 26 1 0.9285 -6.3436 -2.2089 27 6 1.6518 -4.8482 -0.8805 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 1.8373 2.1103 0.0004 32 1 4.4044 -1.7237 0.0098 33 1 3.2217 -2.0054 -1.9808 34 1 3.9333 -3.6408 -1.9710 35 1 1.3917 -2.7836 -3.4259 36 1 2.9567 -3.1528 -4.1829 37 1 0.7702 -6.0521 -4.8704 38 1 1.1456 -4.3852 -5.4151 39 1 -1.2755 -5.0977 -4.2488 40 1 -0.5858 -3.4527 -4.1553 41 1 -3.5765 -3.2994 -3.4081 42 1 2.4985 -5.4972 -0.6571 43 1 0.9034 -4.9513 -0.0947 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041999385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:49 Heat of formation + Delta-G solvation = 9.178947 kcal Electronic energy + Delta-G solvation = -26530.321784 eV Core-core repulsion = 23087.982480 eV Total energy + Delta-G solvation = -3442.339304 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52317 -39.89201 -38.07065 -36.54012 -34.65859 -32.92633 -32.28031 -30.62212 -30.07093 -28.63737 -26.54705 -26.09091 -24.34818 -23.84676 -21.85374 -21.72503 -20.18329 -19.21903 -18.56402 -18.41913 -17.84626 -16.98224 -16.60424 -16.20069 -15.91958 -15.71334 -15.32656 -14.81165 -14.77045 -14.54742 -14.15939 -14.09498 -14.02269 -13.68703 -13.40614 -13.30799 -13.14171 -13.01944 -12.89863 -12.79904 -12.65070 -12.55153 -12.34010 -12.05955 -11.94393 -11.62833 -11.40165 -11.28453 -11.13630 -10.78317 -10.66342 -9.80412 -9.51874 -9.14431 -8.78989 -7.84111 -5.12741 -0.07610 0.68812 0.93491 1.15708 1.33782 1.35735 1.45407 1.83698 2.37708 2.47555 3.34769 3.51497 3.76258 3.80143 3.88924 3.93746 4.11956 4.19596 4.29931 4.36594 4.46980 4.49395 4.58346 4.59643 4.62456 4.65744 4.74126 4.79949 4.86788 4.88743 4.91811 5.01225 5.13851 5.16813 5.23287 5.30759 5.45561 5.56257 5.64743 5.72126 5.73896 5.81571 6.24142 6.55063 7.16070 7.28311 7.84319 8.47431 9.27189 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.006154 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.083921 B = 4548.450820 C = 5857.405432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.090 4.090 3 C -0.237 4.237 4 S 0.256 5.744 5 C -0.210 4.210 6 C -0.168 4.168 7 C 0.572 3.428 8 O -0.584 6.584 9 N -0.589 5.589 10 C 0.107 3.893 11 C -0.118 4.118 12 C -0.083 4.083 13 H 0.126 0.874 14 C -0.130 4.130 15 C 0.186 3.814 16 N -0.604 5.604 17 C -0.198 4.198 18 H 0.067 0.933 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 0.950 3.050 22 H -0.294 1.294 23 H -0.289 1.289 24 H -0.282 1.282 25 C 0.141 3.859 26 H 0.028 0.972 27 C 0.116 3.884 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.190 0.810 32 H 0.193 0.807 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.028 0.972 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.001 0.999 40 H 0.001 0.999 41 H 0.242 0.758 42 H 0.098 0.902 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.101 6.819 0.444 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.372 4.372 4 S 0.523 5.477 5 C -0.348 4.348 6 C -0.186 4.186 7 C 0.360 3.640 8 O -0.464 6.464 9 N -0.320 5.320 10 C -0.014 4.014 11 C -0.156 4.156 12 C -0.103 4.103 13 H 0.144 0.856 14 C -0.168 4.168 15 C 0.061 3.939 16 N -0.329 5.329 17 C -0.328 4.328 18 H 0.084 0.916 19 C -0.256 4.256 20 N -0.600 5.600 21 Si 0.780 3.220 22 H -0.221 1.221 23 H -0.215 1.215 24 H -0.207 1.207 25 C 0.034 3.966 26 H 0.046 0.954 27 C -0.008 4.008 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.207 0.793 32 H 0.210 0.790 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.047 0.953 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.051 0.949 42 H 0.116 0.884 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.805 7.594 0.893 23.107 hybrid contribution -3.437 -0.892 0.690 3.618 sum 18.368 6.702 1.583 19.616 Atomic orbital electron populations 1.20350 0.90870 1.01778 1.01858 1.19815 0.96518 0.91341 1.02399 1.25566 0.97994 1.02487 1.11161 1.82504 1.02632 0.94226 1.68337 1.25808 0.98046 1.04826 1.06111 1.20043 0.93956 0.92981 1.11620 1.18122 0.80246 0.84610 0.81014 1.90750 1.34408 1.79989 1.41289 1.47873 1.47953 1.09821 1.26364 1.22044 0.92685 1.02154 0.84521 1.21787 1.00028 0.95779 0.98051 1.22445 0.97251 0.97087 0.93484 0.85605 1.23029 0.94928 1.01083 0.97746 1.20965 0.93743 0.96273 0.82893 1.44471 1.14699 1.71514 1.02205 1.19106 0.92224 1.33591 0.87870 0.91563 1.25282 0.99390 1.03503 0.97445 1.70153 1.21369 1.53826 1.14658 0.85458 0.79779 0.77560 0.79159 1.22149 1.21488 1.20716 1.21027 0.85994 0.95413 0.94185 0.95412 1.21309 0.99110 0.81887 0.98457 0.91603 0.89650 0.95407 0.79276 0.79003 0.89174 0.87421 0.95333 0.88012 0.91281 0.90086 0.98086 0.98113 0.94903 0.88373 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.30 9.74 71.23 0.69 -2.61 16 2 C -0.09 -2.84 6.01 -19.47 -0.12 -2.95 16 3 C -0.24 -5.29 10.91 66.64 0.73 -4.56 16 4 S 0.26 4.12 23.02 -56.49 -1.30 2.82 16 5 C -0.21 -4.55 8.76 67.30 0.59 -3.96 16 6 C -0.17 -5.39 4.76 -19.87 -0.09 -5.48 16 7 C 0.57 23.15 6.72 86.59 0.58 23.73 16 8 O -0.58 -29.55 16.16 -4.15 -0.07 -29.62 16 9 N -0.59 -20.56 2.97 -827.25 -2.46 -23.02 16 10 C 0.11 2.66 5.90 86.20 0.51 3.17 16 11 C -0.12 -3.33 5.04 30.57 0.15 -3.18 16 12 C -0.08 -2.45 3.68 -9.38 -0.03 -2.48 16 13 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 14 C -0.13 -4.45 6.32 32.16 0.20 -4.25 16 15 C 0.19 9.28 4.61 86.71 0.40 9.68 16 16 N -0.60 -31.23 3.20 -674.09 -2.15 -33.38 16 17 C -0.20 -11.83 9.71 84.04 0.82 -11.01 16 18 H 0.07 4.15 6.36 -2.91 -0.02 4.13 16 19 C -0.06 -3.93 5.49 84.87 0.47 -3.47 16 20 N -0.95 -60.20 10.41 21.66 0.23 -59.98 16 21 Si 0.95 51.33 29.56 68.60 2.03 53.36 16 22 H -0.29 -15.86 7.11 99.48 0.71 -15.15 16 23 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 24 H -0.28 -15.06 7.11 99.48 0.71 -14.36 16 25 C 0.14 5.51 2.97 44.77 0.13 5.65 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 C 0.12 4.30 5.69 85.77 0.49 4.78 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16 30 H 0.03 1.29 7.66 -2.38 -0.02 1.27 16 31 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.19 3.06 7.98 -2.91 -0.02 3.03 16 33 H 0.09 2.09 5.33 -2.39 -0.01 2.08 16 34 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.03 1.11 6.85 -2.39 -0.02 1.09 16 36 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.08 2.44 7.98 -2.39 -0.02 2.42 16 39 H 0.00 0.05 7.44 -2.39 -0.02 0.03 16 40 H 0.00 0.04 7.19 -2.39 -0.02 0.02 16 41 H 0.24 15.03 8.31 -92.70 -0.77 14.26 16 42 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.05 2.37 5.51 -2.38 -0.01 2.36 16 Total: -1.00 -82.30 346.74 2.80 -79.50 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.01 Total: 7.25 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 5.51 Total: 3.05 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -4.38 Total: -116.37 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.07 Total: -29.62 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.03 Total: 53.36 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.30 Total: 2.82 kcal Total: -82.30 2.80 -79.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041999385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.678 kcal (2) G-P(sol) polarization free energy of solvation -82.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds