Wall clock time and date at job start Tue Mar 31 2020 12:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32765 * 123.46119 * 2 1 4 4 S 1.75510 * 110.57477 * 179.97438 * 3 2 1 5 5 C 1.70441 * 92.44396 * 359.97438 * 4 3 2 6 6 C 1.36011 * 110.82185 * 359.97438 * 5 4 3 7 7 C 1.47183 * 123.46425 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00101 * 224.97837 * 7 6 5 9 9 N 1.34776 * 120.00067 * 44.98073 * 7 6 5 10 10 C 1.46594 * 119.75272 * 5.20580 * 9 7 6 11 11 C 1.53890 * 110.71003 * 132.25092 * 10 9 7 12 12 C 1.51984 * 107.28485 * 51.81836 * 11 10 9 13 13 H 1.08993 * 111.01950 * 56.52002 * 12 11 10 14 14 C 1.53703 * 114.99949 * 184.55550 * 12 11 10 15 15 C 1.55303 * 101.80946 * 153.46856 * 14 12 11 16 16 N 1.48152 * 107.04376 * 337.55115 * 15 14 12 17 17 C 1.36941 * 126.40003 * 174.96244 * 16 15 14 18 18 H 1.08003 * 120.00057 * 187.11388 * 17 16 15 19 19 C 1.38808 * 119.99839 * 7.11546 * 17 16 15 20 20 N 1.31621 * 120.00163 * 354.07502 * 19 17 16 21 21 Si 1.86799 * 120.00225 * 174.08018 * 19 17 16 22 22 H 1.48494 * 109.47624 * 94.98129 * 21 19 17 23 23 H 1.48503 * 109.47037 * 214.98574 * 21 19 17 24 24 H 1.48507 * 109.46865 * 334.97839 * 21 19 17 25 25 C 1.45503 * 107.20287 * 355.00135 * 16 15 14 26 26 H 1.09002 * 109.56723 * 273.37361 * 25 16 15 27 27 C 1.47794 * 119.75813 * 184.93879 * 9 7 6 28 28 H 1.08999 * 109.47003 * 90.02395 * 1 2 3 29 29 H 1.09000 * 109.47843 * 210.03141 * 1 2 3 30 30 H 1.09004 * 109.47306 * 330.02991 * 1 2 3 31 31 H 1.07996 * 124.71139 * 359.96019 * 3 2 1 32 32 H 1.08005 * 124.58745 * 179.73110 * 5 4 3 33 33 H 1.09000 * 109.23625 * 252.56957 * 10 9 7 34 34 H 1.09003 * 109.22975 * 11.98242 * 10 9 7 35 35 H 1.08997 * 109.89441 * 171.25876 * 11 10 9 36 36 H 1.08999 * 109.89552 * 292.29710 * 11 10 9 37 37 H 1.09002 * 110.96194 * 271.59258 * 14 12 11 38 38 H 1.08993 * 110.96225 * 35.33768 * 14 12 11 39 39 H 1.08999 * 109.91630 * 218.20430 * 15 14 12 40 40 H 1.09003 * 110.08903 * 96.99696 * 15 14 12 41 41 H 0.97000 * 120.00542 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.06311 * 350.47456 * 27 9 7 43 43 H 1.08998 * 110.07023 * 112.03150 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7162 0.0007 5 6 3.6410 -0.9600 0.0018 6 6 2.3031 -1.2050 0.0022 7 6 1.7260 -2.5590 0.0025 8 8 0.8019 -2.8265 -0.7418 9 7 2.2215 -3.5025 0.8276 10 6 3.2567 -3.1457 1.8023 11 6 2.9061 -3.6978 3.1953 12 6 2.6082 -5.1792 3.0321 13 1 3.4496 -5.6990 2.5742 14 6 2.1275 -5.8895 4.3076 15 6 1.2891 -7.0590 3.7234 16 7 0.8838 -6.6615 2.3550 17 6 0.2142 -7.4386 1.4478 18 1 0.0703 -7.0863 0.4370 19 6 -0.2795 -8.6792 1.8273 20 7 -0.0049 -9.1596 3.0216 21 14 -1.3337 -9.6670 0.6432 22 1 -0.4782 -10.6288 -0.0971 23 1 -2.3697 -10.4102 1.4046 24 1 -1.9916 -8.7471 -0.3193 25 6 1.3309 -5.2914 2.1546 26 1 0.5723 -4.6020 2.5252 27 6 1.7129 -4.8879 0.7471 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3635 -0.8897 0.5143 30 1 -0.3634 0.8903 0.5134 31 1 1.8375 2.1101 -0.0006 32 1 4.4043 -1.7241 -0.0016 33 1 4.2113 -3.5623 1.4809 34 1 3.3391 -2.0602 1.8574 35 1 3.7500 -3.5615 3.8715 36 1 2.0293 -3.1831 3.5883 37 1 2.9713 -6.2656 4.8861 38 1 1.5064 -5.2282 4.9117 39 1 0.4050 -7.2257 4.3389 40 1 1.8903 -7.9673 3.6837 41 1 -0.3496 -10.0266 3.2867 42 1 0.8385 -4.9280 0.0975 43 1 2.4914 -5.5508 0.3694 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041999388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:58 Heat of formation + Delta-G solvation = 9.478443 kcal Electronic energy + Delta-G solvation = -25415.355418 eV Core-core repulsion = 21973.029101 eV Total energy + Delta-G solvation = -3442.326317 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69114 -39.98486 -38.13441 -36.90713 -34.71045 -32.97652 -32.44999 -30.79265 -30.14965 -28.56080 -26.61953 -26.09762 -24.25240 -23.52656 -21.87144 -21.74320 -20.87411 -19.34232 -18.60851 -18.50782 -17.86720 -16.89439 -16.85013 -16.16483 -15.98340 -15.71678 -15.46465 -14.89943 -14.74030 -14.57518 -14.38295 -14.22694 -13.85435 -13.77950 -13.60135 -13.39455 -13.18407 -13.11923 -12.96702 -12.78683 -12.73856 -12.50941 -12.16242 -12.03053 -11.90534 -11.75244 -11.58548 -11.37550 -11.05078 -10.96301 -10.73497 -9.80625 -9.74039 -9.18581 -8.91973 -7.90489 -5.24457 -0.12326 0.67210 0.93892 1.08221 1.41372 1.42896 1.52672 1.75789 2.13694 2.47052 3.28649 3.43767 3.62573 3.76445 3.81537 3.94012 3.96802 4.21777 4.24054 4.26684 4.30735 4.40545 4.50412 4.59623 4.60995 4.70794 4.72305 4.78160 4.80965 4.87252 4.88454 4.94742 5.08255 5.13453 5.20978 5.27901 5.35517 5.46275 5.49666 5.56741 5.65845 5.74738 6.16626 6.35668 7.05569 7.07189 7.73556 8.41190 9.21292 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.003584 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.833937 B = 7810.097763 C = 8686.937643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.086 4.086 3 C -0.235 4.235 4 S 0.253 5.747 5 C -0.211 4.211 6 C -0.172 4.172 7 C 0.568 3.432 8 O -0.585 6.585 9 N -0.597 5.597 10 C 0.099 3.901 11 C -0.110 4.110 12 C -0.095 4.095 13 H 0.080 0.920 14 C -0.121 4.121 15 C 0.181 3.819 16 N -0.613 5.613 17 C -0.241 4.241 18 H 0.074 0.926 19 C -0.059 4.059 20 N -0.946 5.946 21 Si 0.970 3.030 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.149 3.851 26 H 0.002 0.998 27 C 0.129 3.871 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.194 0.806 32 H 0.188 0.812 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.003 0.997 40 H 0.019 0.981 41 H 0.248 0.752 42 H 0.055 0.945 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.352 23.821 -0.925 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.370 4.370 4 S 0.521 5.479 5 C -0.349 4.349 6 C -0.190 4.190 7 C 0.356 3.644 8 O -0.466 6.466 9 N -0.329 5.329 10 C -0.022 4.022 11 C -0.149 4.149 12 C -0.114 4.114 13 H 0.098 0.902 14 C -0.159 4.159 15 C 0.057 3.943 16 N -0.338 5.338 17 C -0.370 4.370 18 H 0.092 0.908 19 C -0.252 4.252 20 N -0.594 5.594 21 Si 0.798 3.202 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.201 1.201 25 C 0.041 3.959 26 H 0.019 0.981 27 C 0.005 3.995 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.211 0.789 32 H 0.205 0.795 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.021 0.979 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.125 24.353 -1.309 28.183 hybrid contribution -2.614 -2.492 -0.658 3.671 sum 11.510 21.861 -1.967 24.784 Atomic orbital electron populations 1.20419 0.89668 1.02386 1.02406 1.19863 0.97292 0.90514 1.02046 1.25613 0.97451 1.02836 1.11084 1.82756 1.03521 0.93967 1.67688 1.25942 0.98521 1.04995 1.05484 1.19974 0.93796 0.92564 1.12682 1.18364 0.81571 0.84822 0.79622 1.90763 1.30597 1.82055 1.43175 1.48215 1.40438 1.08272 1.36020 1.22244 0.89926 1.02333 0.87687 1.21813 1.03378 0.92922 0.96754 1.22196 0.96412 0.96806 0.96022 0.90175 1.22590 0.99599 0.96984 0.96732 1.21358 0.94778 0.94273 0.83938 1.44438 1.65951 1.10019 1.13405 1.19301 1.27233 0.98277 0.92159 0.90843 1.25565 1.02026 0.99020 0.98606 1.70149 1.49607 1.19059 1.20600 0.85191 0.78525 0.78478 0.77969 1.20941 1.21643 1.20131 1.20999 0.94562 0.86148 0.94188 0.98066 1.21223 0.98742 0.81397 0.98099 0.91434 0.94276 0.88840 0.78858 0.79506 0.89251 0.87352 0.86556 0.92088 0.89254 0.91340 0.97886 0.96310 0.94266 0.92638 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.10 9.55 71.24 0.68 -1.42 16 2 C -0.09 -1.92 6.00 -19.46 -0.12 -2.03 16 3 C -0.23 -3.43 10.91 66.64 0.73 -2.70 16 4 S 0.25 2.82 23.02 -56.49 -1.30 1.52 16 5 C -0.21 -3.56 8.49 67.30 0.57 -2.99 16 6 C -0.17 -4.29 4.93 -19.87 -0.10 -4.39 16 7 C 0.57 19.39 6.89 86.59 0.60 19.99 16 8 O -0.58 -25.50 15.60 -4.13 -0.06 -25.56 16 9 N -0.60 -18.97 3.02 -823.81 -2.49 -21.45 16 10 C 0.10 2.12 5.11 86.66 0.44 2.56 16 11 C -0.11 -2.49 5.72 30.56 0.17 -2.31 16 12 C -0.09 -3.05 2.62 -10.08 -0.03 -3.08 16 13 H 0.08 2.58 8.13 -2.39 -0.02 2.56 16 14 C -0.12 -4.25 6.54 31.62 0.21 -4.04 16 15 C 0.18 9.04 5.44 86.85 0.47 9.51 16 16 N -0.61 -32.58 3.35 -670.14 -2.24 -34.82 16 17 C -0.24 -14.12 9.89 84.03 0.83 -13.29 16 18 H 0.07 4.27 7.37 -2.91 -0.02 4.25 16 19 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 20 N -0.95 -58.07 10.48 21.65 0.23 -57.84 16 21 Si 0.97 47.89 29.56 68.60 2.03 49.91 16 22 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 24 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 25 C 0.15 6.38 2.74 45.45 0.12 6.51 16 26 H 0.00 0.09 7.93 -2.39 -0.02 0.07 16 27 C 0.13 5.20 5.63 85.58 0.48 5.68 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.15 7.42 -2.39 -0.02 1.13 16 30 H 0.09 1.56 8.13 -2.39 -0.02 1.54 16 31 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.19 2.43 7.37 -2.91 -0.02 2.41 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.11 1.85 5.16 -2.39 -0.01 1.84 16 35 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.51 7.99 -2.39 -0.02 1.49 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 39 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 40 H 0.02 1.03 7.45 -2.39 -0.02 1.01 16 41 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 42 H 0.06 2.63 6.75 -2.39 -0.02 2.62 16 43 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -77.79 348.79 2.70 -75.08 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.01 Total: 8.16 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.54 Total: 5.00 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -4.50 Total: -114.12 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.56 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.91 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.30 Total: 1.52 kcal Total: -77.79 2.70 -75.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041999388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.561 kcal (2) G-P(sol) polarization free energy of solvation -77.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds