Wall clock time and date at job start Tue Mar 31 2020 12:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46499 * 110.88840 * 2 1 4 4 C 1.34784 * 119.99893 * 62.42569 * 3 2 1 5 5 O 1.21283 * 119.99649 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99774 * 179.72962 * 4 3 2 7 7 H 1.08996 * 115.55571 * 34.32938 * 6 4 3 8 8 C 1.53006 * 117.49428 * 248.61931 * 6 4 3 9 9 C 1.53001 * 117.49691 * 179.97438 * 6 4 3 10 10 H 1.09005 * 117.49696 * 359.97438 * 9 6 4 11 11 C 1.50697 * 117.50284 * 215.00205 * 9 6 4 12 12 C 1.38419 * 122.54380 * 119.73677 * 11 9 6 13 13 C 1.33388 * 114.92330 * 179.76435 * 12 11 9 14 14 S 1.75892 * 109.59098 * 0.47420 * 13 12 11 15 15 C 1.33393 * 122.53416 * 300.02539 * 11 9 6 16 16 C 1.55157 * 111.04114 * 236.09531 * 2 1 3 17 17 C 1.54320 * 102.94732 * 206.40999 * 16 2 1 18 18 N 1.47024 * 107.26919 * 22.19036 * 17 16 2 19 19 C 1.36934 * 125.64716 * 181.09563 * 18 17 16 20 20 H 1.08001 * 120.00158 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00093 * 359.95949 * 19 18 17 22 22 N 1.31616 * 120.00158 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99931 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46867 * 90.00279 * 23 21 19 25 25 H 1.48502 * 109.47075 * 209.99896 * 23 21 19 26 26 H 1.48497 * 109.47004 * 330.00361 * 23 21 19 27 27 C 1.47426 * 108.70436 * 1.06264 * 18 17 16 28 28 H 1.09006 * 109.47318 * 60.70571 * 1 2 3 29 29 H 1.09005 * 109.47495 * 180.69752 * 1 2 3 30 30 H 1.08997 * 109.47493 * 300.69891 * 1 2 3 31 31 H 0.97005 * 120.00261 * 242.42781 * 3 2 1 32 32 H 1.08996 * 117.49757 * 0.02562 * 8 6 4 33 33 H 1.08998 * 117.49562 * 145.02542 * 8 6 4 34 34 H 1.08000 * 122.53800 * 359.97438 * 12 11 9 35 35 H 1.07998 * 125.20789 * 180.20416 * 13 12 11 36 36 H 1.08000 * 125.20591 * 359.97325 * 15 11 9 37 37 H 1.08997 * 110.72250 * 324.77538 * 16 2 1 38 38 H 1.09001 * 110.72190 * 88.04237 * 16 2 1 39 39 H 1.09001 * 109.88058 * 262.77509 * 17 16 2 40 40 H 1.08992 * 109.88319 * 141.60808 * 17 16 2 41 41 H 0.96998 * 119.99910 * 179.97438 * 22 21 19 42 42 H 1.08996 * 110.36441 * 217.03409 * 27 18 17 43 43 H 1.08999 * 110.46426 * 94.75233 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7877 2.1910 1.0347 5 8 1.1176 1.7975 1.9659 6 6 2.3301 3.5969 1.0375 7 1 2.3943 4.0781 0.0616 8 6 3.4129 3.9342 2.0646 9 6 1.9943 4.4812 2.2401 10 1 1.3807 4.0461 3.0290 11 6 1.7780 5.9506 1.9846 12 6 0.5839 6.5886 2.2727 13 6 0.5606 7.8920 1.9903 14 16 2.1087 8.3757 1.3097 15 6 2.7211 6.7337 1.4586 16 6 2.0870 -0.8078 -1.2019 17 6 3.4683 -1.2732 -0.6952 18 7 3.4275 -1.2420 0.7742 19 6 4.4646 -1.5636 1.6084 20 1 4.3338 -1.5080 2.6790 21 6 5.6842 -1.9614 1.0780 22 7 5.8439 -2.0290 -0.2267 23 14 7.0993 -2.3995 2.2161 24 1 7.0472 -3.8488 2.5354 25 1 8.3876 -2.0861 1.5473 26 1 6.9880 -1.6120 3.4701 27 6 2.0852 -0.8062 1.2006 28 1 -0.3634 0.5029 -0.8963 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3634 0.5246 0.8836 31 1 2.5885 1.6832 -0.7447 32 1 3.7332 3.1391 2.7378 33 1 4.1898 4.6374 1.7643 34 1 -0.2636 6.0709 2.6971 35 1 -0.2815 8.5489 2.1507 36 1 3.7096 6.4092 1.1688 37 1 1.4482 -1.6634 -1.4208 38 1 2.1930 -0.1699 -2.0794 39 1 4.2432 -0.5984 -1.0589 40 1 3.6665 -2.2883 -1.0390 41 1 6.6962 -2.3066 -0.5972 42 1 2.1553 -0.1714 2.0839 43 1 1.4511 -1.6691 1.4038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046419700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:43 Heat of formation + Delta-G solvation = 52.106595 kcal Electronic energy + Delta-G solvation = -24725.224530 eV Core-core repulsion = 21284.746709 eV Total energy + Delta-G solvation = -3440.477822 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.18527 -38.87393 -37.29088 -35.39135 -33.88155 -31.83636 -30.04541 -29.40637 -28.65269 -25.68563 -25.42322 -24.37679 -23.35894 -21.57791 -20.48690 -19.86959 -19.00881 -18.64940 -18.15208 -17.12171 -16.50373 -15.80532 -15.36622 -14.63781 -14.58275 -14.40556 -13.93489 -13.61544 -13.33667 -13.27012 -12.89878 -12.81911 -12.73431 -12.19406 -12.06065 -11.90009 -11.82121 -11.74172 -11.63901 -10.95794 -10.87852 -10.87546 -10.70229 -10.47487 -10.35147 -10.32564 -10.06094 -9.96061 -9.63475 -9.24803 -8.96071 -8.61220 -8.49803 -8.44740 -6.77331 -5.68668 -3.00247 0.79541 1.46431 1.78200 2.38511 2.89779 3.41427 3.46912 3.48494 3.50671 4.01875 4.52501 4.53603 4.76274 4.86170 4.90235 5.04988 5.11183 5.23567 5.28948 5.41663 5.45616 5.51349 5.64555 5.71078 5.74841 5.75652 5.98772 6.03716 6.07781 6.16713 6.17995 6.20502 6.37355 6.37736 6.42547 6.57020 6.71364 6.85925 7.18649 7.57014 7.59142 7.82273 7.97304 8.28612 8.65468 9.26003 9.86217 10.52598 11.43416 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.003186 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.023818 B = 8786.749157 C = 9859.855133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.697 5.697 4 C 0.547 3.453 5 O -0.541 6.541 6 C -0.173 4.173 7 H 0.120 0.880 8 C -0.139 4.139 9 C -0.068 4.068 10 H 0.128 0.872 11 C -0.065 4.065 12 C -0.122 4.122 13 C -0.214 4.214 14 S 0.086 5.914 15 C -0.213 4.213 16 C -0.147 4.147 17 C 0.178 3.822 18 N -0.602 5.602 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.925 5.925 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.132 3.868 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.251 0.749 42 H 0.055 0.945 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 18.273 -0.910 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.070 3.930 3 N -0.346 5.346 4 C 0.333 3.667 5 O -0.419 6.419 6 C -0.195 4.195 7 H 0.138 0.862 8 C -0.177 4.177 9 C -0.089 4.089 10 H 0.146 0.854 11 C -0.077 4.077 12 C -0.153 4.153 13 C -0.349 4.349 14 S 0.349 5.651 15 C -0.348 4.348 16 C -0.186 4.186 17 C 0.053 3.947 18 N -0.329 5.329 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.573 5.573 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.005 3.995 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.394 19.297 -0.808 21.478 hybrid contribution 0.568 -1.458 0.509 1.646 sum -8.826 17.839 -0.299 19.905 Atomic orbital electron populations 1.21986 0.94484 1.02084 1.02190 1.21480 0.92444 0.80888 0.98218 1.45708 1.53851 1.12533 1.22475 1.19390 0.79736 0.85495 0.82075 1.90636 1.39694 1.76462 1.35151 1.22359 1.05983 0.94638 0.96481 0.86211 1.23098 0.91134 1.02999 1.00442 1.20729 0.99933 0.88783 0.99504 0.85438 1.18252 0.93423 0.94919 1.01085 1.20074 0.98655 0.93739 1.02805 1.25574 1.01407 0.99452 1.08442 1.84244 1.07763 1.10263 1.62782 1.25476 1.04168 0.95951 1.09193 1.23227 1.00520 0.98886 0.95920 1.21138 0.89958 0.99830 0.83732 1.44433 1.07752 1.78903 1.01778 1.19053 0.89339 1.37493 0.88971 0.90649 1.24755 0.97729 1.02100 0.95990 1.69947 1.24072 1.54103 1.09172 0.86144 0.81992 0.78229 0.79587 1.21681 1.21756 1.20761 1.21880 0.87507 0.94835 0.95305 0.93200 0.91906 0.91064 0.76817 0.87272 0.87889 0.83972 0.81877 0.81722 0.90945 0.91816 0.93673 0.93915 0.93912 0.92645 0.95872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.62 37.15 0.32 -1.98 16 2 C 0.16 2.78 0.82 -129.67 -0.11 2.67 16 3 N -0.70 -11.36 5.17 -45.63 -0.24 -11.60 16 4 C 0.55 9.02 7.00 -10.98 -0.08 8.94 16 5 O -0.54 -10.47 13.03 5.56 0.07 -10.39 16 6 C -0.17 -2.24 5.85 -91.77 -0.54 -2.78 16 7 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 8 C -0.14 -1.72 9.63 -26.70 -0.26 -1.97 16 9 C -0.07 -0.83 5.66 -91.75 -0.52 -1.35 16 10 H 0.13 1.71 7.67 -51.93 -0.40 1.31 16 11 C -0.06 -0.70 5.52 -106.25 -0.59 -1.29 16 12 C -0.12 -1.22 9.98 -41.21 -0.41 -1.63 16 13 C -0.21 -1.85 11.23 29.04 0.33 -1.52 16 14 S 0.09 0.75 23.34 -107.50 -2.51 -1.76 16 15 C -0.21 -2.08 10.39 29.04 0.30 -1.78 16 16 C -0.15 -2.62 5.99 -24.90 -0.15 -2.76 16 17 C 0.18 4.21 5.36 -3.06 -0.02 4.20 16 18 N -0.60 -15.46 3.39 -170.08 -0.58 -16.04 16 19 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -26.96 10.31 55.49 0.57 -26.39 16 23 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.13 2.91 6.11 -2.53 -0.02 2.89 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.07 1.19 6.46 -51.93 -0.34 0.86 16 31 H 0.40 5.76 8.49 -40.82 -0.35 5.42 16 32 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.10 1.05 6.55 -51.93 -0.34 0.71 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.17 1.40 6.64 -52.49 -0.35 1.06 16 37 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 38 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 39 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 40 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.06 1.32 6.31 -51.93 -0.33 0.99 16 43 H 0.02 0.52 8.03 -51.93 -0.42 0.10 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -31.96 359.98 -10.46 -42.42 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.20 Total: 6.14 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.98 Total: -5.13 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.24 Total: -54.03 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.96 -10.46 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046419700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.525 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds