Wall clock time and date at job start Tue Mar 31 2020 12:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46499 * 110.88840 * 2 1 4 4 C 1.34784 * 119.99893 * 62.42569 * 3 2 1 5 5 O 1.21283 * 119.99649 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99774 * 179.72962 * 4 3 2 7 7 H 1.08996 * 115.55571 * 34.32938 * 6 4 3 8 8 C 1.53006 * 117.49428 * 248.61931 * 6 4 3 9 9 C 1.53001 * 117.49691 * 179.97438 * 6 4 3 10 10 H 1.09005 * 117.49696 * 359.97438 * 9 6 4 11 11 C 1.50697 * 117.50284 * 215.00205 * 9 6 4 12 12 C 1.38419 * 122.54380 * 119.73677 * 11 9 6 13 13 C 1.33388 * 114.92330 * 179.76435 * 12 11 9 14 14 S 1.75892 * 109.59098 * 0.47420 * 13 12 11 15 15 C 1.33393 * 122.53416 * 300.02539 * 11 9 6 16 16 C 1.55157 * 111.04114 * 236.09531 * 2 1 3 17 17 C 1.54320 * 102.94732 * 206.40999 * 16 2 1 18 18 N 1.47024 * 107.26919 * 22.19036 * 17 16 2 19 19 C 1.36934 * 125.64716 * 181.09563 * 18 17 16 20 20 H 1.08001 * 120.00158 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00093 * 359.95949 * 19 18 17 22 22 N 1.31616 * 120.00158 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99931 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46867 * 90.00279 * 23 21 19 25 25 H 1.48502 * 109.47075 * 209.99896 * 23 21 19 26 26 H 1.48497 * 109.47004 * 330.00361 * 23 21 19 27 27 C 1.47426 * 108.70436 * 1.06264 * 18 17 16 28 28 H 1.09006 * 109.47318 * 60.70571 * 1 2 3 29 29 H 1.09005 * 109.47495 * 180.69752 * 1 2 3 30 30 H 1.08997 * 109.47493 * 300.69891 * 1 2 3 31 31 H 0.97005 * 120.00261 * 242.42781 * 3 2 1 32 32 H 1.08996 * 117.49757 * 0.02562 * 8 6 4 33 33 H 1.08998 * 117.49562 * 145.02542 * 8 6 4 34 34 H 1.08000 * 122.53800 * 359.97438 * 12 11 9 35 35 H 1.07998 * 125.20789 * 180.20416 * 13 12 11 36 36 H 1.08000 * 125.20591 * 359.97325 * 15 11 9 37 37 H 1.08997 * 110.72250 * 324.77538 * 16 2 1 38 38 H 1.09001 * 110.72190 * 88.04237 * 16 2 1 39 39 H 1.09001 * 109.88058 * 262.77509 * 17 16 2 40 40 H 1.08992 * 109.88319 * 141.60808 * 17 16 2 41 41 H 0.96998 * 119.99910 * 179.97438 * 22 21 19 42 42 H 1.08996 * 110.36441 * 217.03409 * 27 18 17 43 43 H 1.08999 * 110.46426 * 94.75233 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7877 2.1910 1.0347 5 8 1.1176 1.7975 1.9659 6 6 2.3301 3.5969 1.0375 7 1 2.3943 4.0781 0.0616 8 6 3.4129 3.9342 2.0646 9 6 1.9943 4.4812 2.2401 10 1 1.3807 4.0461 3.0290 11 6 1.7780 5.9506 1.9846 12 6 0.5839 6.5886 2.2727 13 6 0.5606 7.8920 1.9903 14 16 2.1087 8.3757 1.3097 15 6 2.7211 6.7337 1.4586 16 6 2.0870 -0.8078 -1.2019 17 6 3.4683 -1.2732 -0.6952 18 7 3.4275 -1.2420 0.7742 19 6 4.4646 -1.5636 1.6084 20 1 4.3338 -1.5080 2.6790 21 6 5.6842 -1.9614 1.0780 22 7 5.8439 -2.0290 -0.2267 23 14 7.0993 -2.3995 2.2161 24 1 7.0472 -3.8488 2.5354 25 1 8.3876 -2.0861 1.5473 26 1 6.9880 -1.6120 3.4701 27 6 2.0852 -0.8062 1.2006 28 1 -0.3634 0.5029 -0.8963 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3634 0.5246 0.8836 31 1 2.5885 1.6832 -0.7447 32 1 3.7332 3.1391 2.7378 33 1 4.1898 4.6374 1.7643 34 1 -0.2636 6.0709 2.6971 35 1 -0.2815 8.5489 2.1507 36 1 3.7096 6.4092 1.1688 37 1 1.4482 -1.6634 -1.4208 38 1 2.1930 -0.1699 -2.0794 39 1 4.2432 -0.5984 -1.0589 40 1 3.6665 -2.2883 -1.0390 41 1 6.6962 -2.3066 -0.5972 42 1 2.1553 -0.1714 2.0839 43 1 1.4511 -1.6691 1.4038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046419700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:42 Heat of formation + Delta-G solvation = 33.178399 kcal Electronic energy + Delta-G solvation = -24726.045319 eV Core-core repulsion = 21284.746709 eV Total energy + Delta-G solvation = -3441.298610 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45337 -39.97560 -38.67940 -36.44012 -35.61577 -33.60774 -31.71231 -30.40187 -30.12571 -27.52085 -26.34717 -25.68383 -24.93109 -22.47964 -22.18474 -21.26675 -20.43109 -19.46559 -19.06313 -18.84730 -17.82599 -17.13773 -16.70100 -16.39981 -16.00028 -15.73632 -15.50848 -15.05691 -14.51143 -14.22719 -14.07456 -13.92567 -13.75685 -13.62202 -13.52305 -13.38520 -13.11823 -13.08709 -12.82931 -12.75327 -12.67711 -12.12446 -12.04673 -11.96770 -11.72928 -11.69786 -11.60263 -11.57145 -11.42285 -10.71199 -10.60652 -9.94702 -9.67940 -9.19058 -8.86321 -7.85781 -5.19366 0.08090 0.78067 1.07865 1.43505 1.44753 1.48943 1.53635 1.73778 2.28186 2.48048 3.00081 3.32298 3.54008 3.61870 3.71487 3.78030 3.89073 4.05890 4.12899 4.16598 4.20231 4.33219 4.49018 4.64005 4.65719 4.70181 4.81364 4.84809 4.87755 4.91893 4.94167 4.98768 5.04073 5.09354 5.23473 5.35797 5.42365 5.44260 5.59019 5.65528 5.71688 5.79169 6.19986 6.68605 7.11769 7.36548 7.77572 8.42109 9.24030 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.003186 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.023818 B = 8786.749157 C = 9859.855133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.166 3.834 3 N -0.695 5.695 4 C 0.540 3.460 5 O -0.575 6.575 6 C -0.173 4.173 7 H 0.146 0.854 8 C -0.139 4.139 9 C -0.058 4.058 10 H 0.108 0.892 11 C -0.078 4.078 12 C -0.143 4.143 13 C -0.210 4.210 14 S 0.110 5.890 15 C -0.218 4.218 16 C -0.129 4.129 17 C 0.186 3.814 18 N -0.620 5.620 19 C -0.241 4.241 20 H 0.067 0.933 21 C -0.058 4.058 22 N -0.945 5.945 23 Si 0.973 3.027 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.275 1.275 27 C 0.128 3.872 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.408 0.592 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.145 0.855 35 H 0.187 0.813 36 H 0.177 0.823 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.018 0.982 40 H 0.007 0.993 41 H 0.247 0.753 42 H 0.031 0.969 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.279 20.195 -1.903 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.079 3.921 3 N -0.345 5.345 4 C 0.328 3.672 5 O -0.455 6.455 6 C -0.195 4.195 7 H 0.163 0.837 8 C -0.177 4.177 9 C -0.079 4.079 10 H 0.126 0.874 11 C -0.091 4.091 12 C -0.173 4.173 13 C -0.345 4.345 14 S 0.374 5.626 15 C -0.354 4.354 16 C -0.167 4.167 17 C 0.061 3.939 18 N -0.346 5.346 19 C -0.370 4.370 20 H 0.085 0.915 21 C -0.252 4.252 22 N -0.594 5.594 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.200 1.200 27 C 0.002 3.998 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.244 0.756 32 H 0.102 0.898 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.204 0.796 36 H 0.194 0.806 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.036 0.964 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -9.951 21.237 -1.812 23.523 hybrid contribution 0.730 -2.039 0.876 2.337 sum -9.221 19.198 -0.935 21.318 Atomic orbital electron populations 1.21904 0.92067 1.02991 1.02785 1.21345 0.94006 0.81115 0.95631 1.45712 1.53917 1.11887 1.22971 1.19995 0.79091 0.86737 0.81360 1.90620 1.41207 1.77420 1.36290 1.22364 1.06279 0.92756 0.98053 0.83655 1.23122 0.91991 1.02796 0.99744 1.20583 0.99176 0.89755 0.98384 0.87373 1.18194 0.94355 0.94002 1.02523 1.20184 0.98724 0.94482 1.03904 1.25894 1.02150 0.99251 1.07189 1.84194 1.07358 1.09009 1.62001 1.25686 1.04489 0.96666 1.08519 1.23102 0.96855 1.00009 0.96737 1.20931 0.92905 0.97337 0.82704 1.44674 1.08438 1.78852 1.02614 1.19301 0.90663 1.37820 0.89240 0.91488 1.25509 0.99902 1.02271 0.97494 1.70144 1.24262 1.54539 1.10460 0.85164 0.78825 0.77849 0.78002 1.21380 1.21497 1.20034 1.21979 0.86273 0.94961 0.96576 0.90438 0.90834 0.92619 0.75588 0.89822 0.85289 0.83737 0.79597 0.80587 0.89159 0.88409 0.96353 0.97457 0.94319 0.95055 0.96089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 8.62 71.98 0.62 -3.38 16 2 C 0.17 5.73 0.82 4.99 0.00 5.73 16 3 N -0.70 -22.00 5.17 -416.65 -2.16 -24.15 16 4 C 0.54 17.75 7.00 87.65 0.61 18.37 16 5 O -0.58 -22.76 13.03 -3.04 -0.04 -22.80 16 6 C -0.17 -4.34 5.85 -11.54 -0.07 -4.41 16 7 H 0.15 2.87 8.14 -2.39 -0.02 2.85 16 8 C -0.14 -3.38 9.63 30.61 0.29 -3.09 16 9 C -0.06 -1.39 5.66 -11.52 -0.07 -1.46 16 10 H 0.11 3.02 7.67 -2.38 -0.02 3.00 16 11 C -0.08 -1.60 5.52 -20.92 -0.12 -1.71 16 12 C -0.14 -2.66 9.98 21.21 0.21 -2.45 16 13 C -0.21 -3.16 11.23 66.72 0.75 -2.41 16 14 S 0.11 1.64 23.34 -56.49 -1.32 0.32 16 15 C -0.22 -3.81 10.39 66.72 0.69 -3.12 16 16 C -0.13 -4.35 5.99 31.78 0.19 -4.16 16 17 C 0.19 8.91 5.36 86.73 0.47 9.38 16 18 N -0.62 -32.62 3.39 -692.00 -2.35 -34.97 16 19 C -0.24 -14.05 10.28 84.03 0.86 -13.18 16 20 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 21 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 22 N -0.95 -56.27 10.31 21.65 0.22 -56.04 16 23 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 27 C 0.13 5.78 6.11 86.86 0.53 6.31 16 28 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.07 1.95 8.13 -2.38 -0.02 1.93 16 30 H 0.05 1.81 6.46 -2.39 -0.02 1.79 16 31 H 0.41 11.14 8.49 -92.70 -0.79 10.35 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.13 2.41 6.55 -2.39 -0.02 2.40 16 34 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.18 2.55 6.64 -2.91 -0.02 2.53 16 37 H 0.09 2.78 8.04 -2.39 -0.02 2.76 16 38 H 0.10 2.68 8.05 -2.39 -0.02 2.66 16 39 H 0.02 0.96 7.38 -2.39 -0.02 0.94 16 40 H 0.01 0.39 7.51 -2.39 -0.02 0.37 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.03 1.55 6.31 -2.39 -0.02 1.54 16 43 H 0.02 0.96 8.03 -2.39 -0.02 0.94 16 Total: -1.00 -71.37 359.98 2.08 -69.29 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.24 Total: 22.17 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.45 Total: -2.47 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -4.28 Total: -115.17 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.04 Total: -22.80 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.32 Total: 0.32 kcal Total: -71.37 2.08 -69.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046419700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.469 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds