Wall clock time and date at job start Tue Mar 31 2020 12:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 110.88541 * 2 1 4 4 C 1.34773 * 119.99840 * 62.42964 * 3 2 1 5 5 O 1.21699 * 120.00337 * 359.97438 * 4 3 2 6 6 C 1.46584 * 120.00012 * 179.97438 * 4 3 2 7 7 C 1.36640 * 125.46265 * 179.97438 * 6 4 3 8 8 C 1.37466 * 113.30027 * 180.02562 * 7 6 4 9 9 C 1.33819 * 115.10262 * 0.02562 * 8 7 6 10 10 C 1.50697 * 124.52469 * 179.97438 * 9 8 7 11 11 C 1.53002 * 117.49992 * 171.25256 * 10 9 8 12 12 C 1.53000 * 117.50034 * 239.91030 * 10 9 8 13 13 S 1.70617 * 110.95060 * 0.25950 * 9 8 7 14 14 C 1.55158 * 111.03559 * 236.09499 * 2 1 3 15 15 C 1.54324 * 102.94305 * 206.40765 * 14 2 1 16 16 N 1.47027 * 107.26582 * 22.19726 * 15 14 2 17 17 C 1.36938 * 125.64345 * 181.02632 * 16 15 14 18 18 H 1.08000 * 120.00112 * 180.02562 * 17 16 15 19 19 C 1.38820 * 120.00186 * 0.03541 * 17 16 15 20 20 N 1.31614 * 119.99512 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99904 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47594 * 90.00051 * 21 19 17 23 23 H 1.48502 * 109.46871 * 210.00047 * 21 19 17 24 24 H 1.48499 * 109.47096 * 329.99684 * 21 19 17 25 25 C 1.47418 * 108.70765 * 1.05672 * 16 15 14 26 26 H 1.08999 * 109.47254 * 60.69662 * 1 2 3 27 27 H 1.08997 * 109.47039 * 180.69924 * 1 2 3 28 28 H 1.09006 * 109.46906 * 300.70419 * 1 2 3 29 29 H 0.96998 * 119.99528 * 242.42411 * 3 2 1 30 30 H 1.08004 * 123.34769 * 0.02562 * 7 6 4 31 31 H 1.07999 * 122.45370 * 179.97438 * 8 7 6 32 32 H 1.09002 * 115.54932 * 25.58094 * 10 9 8 33 33 H 1.09000 * 117.49996 * 215.00670 * 11 10 9 34 34 H 1.08999 * 117.49664 * 0.02562 * 11 10 9 35 35 H 1.09008 * 117.49673 * 359.97438 * 12 10 9 36 36 H 1.08999 * 117.49942 * 144.97208 * 12 10 9 37 37 H 1.08997 * 110.72150 * 324.77410 * 14 2 1 38 38 H 1.09001 * 110.71642 * 88.04287 * 14 2 1 39 39 H 1.08997 * 109.88174 * 262.77564 * 15 14 2 40 40 H 1.08998 * 109.87915 * 141.61052 * 15 14 2 41 41 H 0.97006 * 119.99675 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36635 * 217.03795 * 25 16 15 43 43 H 1.09000 * 110.45867 * 94.75795 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1909 1.0346 5 8 1.1148 1.7965 1.9687 6 6 2.3109 3.5603 1.0349 7 6 2.1118 4.4847 2.0213 8 6 2.7163 5.6924 1.7647 9 6 3.3871 5.7572 0.6086 10 6 4.1260 6.9751 0.1170 11 6 5.0071 6.8140 -1.1234 12 6 3.6843 7.5785 -1.2178 13 16 3.2875 4.2794 -0.2382 14 6 2.0870 -0.8078 -1.2019 15 6 3.4684 -1.2732 -0.6952 16 7 3.4274 -1.2420 0.7741 17 6 4.4643 -1.5650 1.6083 18 1 4.3332 -1.5101 2.6790 19 6 5.6839 -1.9627 1.0779 20 7 5.8439 -2.0288 -0.2268 21 14 7.0980 -2.4038 2.2160 22 1 7.0447 -3.8537 2.5327 23 1 8.3869 -2.0900 1.5485 24 1 6.9865 -1.6185 3.4713 25 6 2.0853 -0.8062 1.2006 26 1 -0.3634 0.5030 -0.8961 27 1 -0.3633 -1.0276 0.0125 28 1 -0.3633 0.5248 0.8837 29 1 2.5886 1.6832 -0.7446 30 1 1.5368 4.2862 2.9138 31 1 2.6536 6.5281 2.4458 32 1 4.4677 7.6620 0.8913 33 1 5.9285 7.3949 -1.1652 34 1 5.0519 5.8273 -1.5842 35 1 2.8594 7.0943 -1.7406 36 1 3.7350 8.6624 -1.3215 37 1 1.4481 -1.6634 -1.4208 38 1 2.1929 -0.1699 -2.0794 39 1 4.2432 -0.5985 -1.0590 40 1 3.6665 -2.2884 -1.0391 41 1 6.6963 -2.3064 -0.5974 42 1 2.1554 -0.1714 2.0839 43 1 1.4512 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046768582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:37 Heat of formation + Delta-G solvation = 49.309834 kcal Electronic energy + Delta-G solvation = -24780.671782 eV Core-core repulsion = 21340.072684 eV Total energy + Delta-G solvation = -3440.599098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.86076 -38.58839 -37.38489 -36.33154 -33.92177 -32.00052 -30.31148 -29.32335 -28.61625 -25.69544 -25.36446 -23.62427 -22.75251 -21.89761 -21.73629 -20.27029 -19.22270 -19.10599 -17.91244 -16.79841 -16.16195 -15.54305 -15.37631 -15.03631 -14.74467 -14.59185 -14.04922 -13.74773 -13.48227 -13.27906 -12.91315 -12.74926 -12.47887 -12.20572 -12.01357 -11.93135 -11.85465 -11.77624 -11.62472 -11.04521 -10.89748 -10.86262 -10.84715 -10.67602 -10.39470 -10.34864 -10.05532 -9.98850 -9.62437 -9.38897 -8.70083 -8.59712 -8.57291 -8.44389 -6.76300 -5.67251 -2.98755 0.51890 1.42328 1.86902 2.38596 3.40236 3.43191 3.48366 3.50465 3.55166 3.59564 4.20137 4.48868 4.54428 4.63323 4.91964 4.98412 5.19411 5.29672 5.29941 5.40235 5.42375 5.50732 5.55854 5.63993 5.70920 5.74582 5.74904 5.95962 6.01548 6.12719 6.15163 6.19246 6.33060 6.36592 6.41112 6.54844 6.69747 6.85796 7.13813 7.57762 7.59065 7.82412 7.87030 8.29721 8.52627 9.27419 9.87413 10.53470 11.44944 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.004162 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.165429 B = 6726.645063 C = 7812.341326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.696 5.696 4 C 0.593 3.407 5 O -0.529 6.529 6 C -0.256 4.256 7 C -0.060 4.060 8 C -0.149 4.149 9 C -0.171 4.171 10 C -0.089 4.089 11 C -0.176 4.176 12 C -0.168 4.168 13 S 0.206 5.794 14 C -0.147 4.147 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.131 3.869 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.394 0.606 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.251 0.749 42 H 0.056 0.944 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 17.933 -4.454 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.346 5.346 4 C 0.378 3.622 5 O -0.408 6.408 6 C -0.376 4.376 7 C -0.092 4.092 8 C -0.180 4.180 9 C -0.291 4.291 10 C -0.109 4.109 11 C -0.214 4.214 12 C -0.205 4.205 13 S 0.475 5.525 14 C -0.186 4.186 15 C 0.053 3.947 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.573 5.573 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.004 3.996 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.228 0.772 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.711 17.005 -5.201 19.007 hybrid contribution 0.683 0.473 1.640 1.839 sum -6.028 17.478 -3.561 18.828 Atomic orbital electron populations 1.21996 0.94226 1.02256 1.02308 1.21533 0.92619 0.80333 0.98533 1.45683 1.54002 1.12954 1.21941 1.16823 0.79922 0.82858 0.82557 1.90768 1.39565 1.75632 1.34842 1.24766 1.10994 0.99778 1.02076 1.20685 0.98555 0.91107 0.98881 1.19837 1.01209 0.99035 0.97899 1.23460 1.05361 0.99666 1.00598 1.20464 1.02408 0.95917 0.92114 1.23136 0.95218 1.02617 1.00381 1.23139 0.98535 1.00297 0.98558 1.82972 1.47029 1.02125 1.20389 1.23242 1.00606 0.98908 0.95802 1.21154 0.89908 0.99918 0.83750 1.44437 1.07793 1.78879 1.01781 1.19072 0.89376 1.37454 0.89006 0.90597 1.24747 0.97688 1.02062 0.95997 1.69947 1.24067 1.54128 1.09162 0.86140 0.81980 0.78209 0.79628 1.21652 1.21739 1.20761 1.21896 0.87572 0.94888 0.95234 0.93090 0.91673 0.90992 0.77197 0.83012 0.84040 0.85932 0.87706 0.88309 0.88336 0.87986 0.90694 0.91804 0.93672 0.93761 0.93909 0.92564 0.95591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.62 37.16 0.32 -2.01 16 2 C 0.16 2.86 0.82 -129.66 -0.11 2.75 16 3 N -0.70 -12.19 5.17 -46.93 -0.24 -12.44 16 4 C 0.59 10.78 7.17 -12.90 -0.09 10.69 16 5 O -0.53 -10.92 13.61 5.19 0.07 -10.85 16 6 C -0.26 -3.95 6.45 -36.79 -0.24 -4.18 16 7 C -0.06 -0.82 10.01 -40.44 -0.40 -1.23 16 8 C -0.15 -1.73 9.99 -41.41 -0.41 -2.14 16 9 C -0.17 -1.94 5.93 -35.86 -0.21 -2.16 16 10 C -0.09 -0.79 6.19 -91.77 -0.57 -1.36 16 11 C -0.18 -1.42 10.01 -26.69 -0.27 -1.69 16 12 C -0.17 -1.24 10.24 -26.70 -0.27 -1.51 16 13 S 0.21 2.58 20.82 -107.50 -2.24 0.34 16 14 C -0.15 -2.65 5.99 -24.90 -0.15 -2.80 16 15 C 0.18 4.25 5.36 -3.06 -0.02 4.23 16 16 N -0.60 -15.76 3.39 -170.07 -0.58 -16.33 16 17 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -27.19 10.31 55.49 0.57 -26.62 16 21 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.13 2.95 6.11 -2.53 -0.02 2.94 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 28 H 0.07 1.22 6.45 -51.93 -0.33 0.89 16 29 H 0.39 6.28 7.60 -40.82 -0.31 5.97 16 30 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.87 7.20 -51.93 -0.37 0.50 16 35 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 38 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 39 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 40 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.06 1.38 6.31 -51.93 -0.33 1.05 16 43 H 0.03 0.58 8.03 -51.93 -0.42 0.17 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -32.65 360.50 -10.99 -43.64 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.30 Total: 4.51 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.69 Total: -5.34 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.25 Total: -55.39 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.24 Total: 0.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.65 -10.99 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046768582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.952 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds