Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46506 * 110.88541 * 2 1 4 4 C 1.34773 * 119.99840 * 62.42964 * 3 2 1 5 5 O 1.21699 * 120.00337 * 359.97438 * 4 3 2 6 6 C 1.46584 * 120.00012 * 179.97438 * 4 3 2 7 7 C 1.36640 * 125.46265 * 179.97438 * 6 4 3 8 8 C 1.37466 * 113.30027 * 180.02562 * 7 6 4 9 9 C 1.33819 * 115.10262 * 0.02562 * 8 7 6 10 10 C 1.50697 * 124.52469 * 179.97438 * 9 8 7 11 11 C 1.53002 * 117.49992 * 171.25256 * 10 9 8 12 12 C 1.53000 * 117.50034 * 239.91030 * 10 9 8 13 13 S 1.70617 * 110.95060 * 0.25950 * 9 8 7 14 14 C 1.55158 * 111.03559 * 236.09499 * 2 1 3 15 15 C 1.54324 * 102.94305 * 206.40765 * 14 2 1 16 16 N 1.47027 * 107.26582 * 22.19726 * 15 14 2 17 17 C 1.36938 * 125.64345 * 181.02632 * 16 15 14 18 18 H 1.08000 * 120.00112 * 180.02562 * 17 16 15 19 19 C 1.38820 * 120.00186 * 0.03541 * 17 16 15 20 20 N 1.31614 * 119.99512 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99904 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47594 * 90.00051 * 21 19 17 23 23 H 1.48502 * 109.46871 * 210.00047 * 21 19 17 24 24 H 1.48499 * 109.47096 * 329.99684 * 21 19 17 25 25 C 1.47418 * 108.70765 * 1.05672 * 16 15 14 26 26 H 1.08999 * 109.47254 * 60.69662 * 1 2 3 27 27 H 1.08997 * 109.47039 * 180.69924 * 1 2 3 28 28 H 1.09006 * 109.46906 * 300.70419 * 1 2 3 29 29 H 0.96998 * 119.99528 * 242.42411 * 3 2 1 30 30 H 1.08004 * 123.34769 * 0.02562 * 7 6 4 31 31 H 1.07999 * 122.45370 * 179.97438 * 8 7 6 32 32 H 1.09002 * 115.54932 * 25.58094 * 10 9 8 33 33 H 1.09000 * 117.49996 * 215.00670 * 11 10 9 34 34 H 1.08999 * 117.49664 * 0.02562 * 11 10 9 35 35 H 1.09008 * 117.49673 * 359.97438 * 12 10 9 36 36 H 1.08999 * 117.49942 * 144.97208 * 12 10 9 37 37 H 1.08997 * 110.72150 * 324.77410 * 14 2 1 38 38 H 1.09001 * 110.71642 * 88.04287 * 14 2 1 39 39 H 1.08997 * 109.88174 * 262.77564 * 15 14 2 40 40 H 1.08998 * 109.87915 * 141.61052 * 15 14 2 41 41 H 0.97006 * 119.99675 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36635 * 217.03795 * 25 16 15 43 43 H 1.09000 * 110.45867 * 94.75795 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1909 1.0346 5 8 1.1148 1.7965 1.9687 6 6 2.3109 3.5603 1.0349 7 6 2.1118 4.4847 2.0213 8 6 2.7163 5.6924 1.7647 9 6 3.3871 5.7572 0.6086 10 6 4.1260 6.9751 0.1170 11 6 5.0071 6.8140 -1.1234 12 6 3.6843 7.5785 -1.2178 13 16 3.2875 4.2794 -0.2382 14 6 2.0870 -0.8078 -1.2019 15 6 3.4684 -1.2732 -0.6952 16 7 3.4274 -1.2420 0.7741 17 6 4.4643 -1.5650 1.6083 18 1 4.3332 -1.5101 2.6790 19 6 5.6839 -1.9627 1.0779 20 7 5.8439 -2.0288 -0.2268 21 14 7.0980 -2.4038 2.2160 22 1 7.0447 -3.8537 2.5327 23 1 8.3869 -2.0900 1.5485 24 1 6.9865 -1.6185 3.4713 25 6 2.0853 -0.8062 1.2006 26 1 -0.3634 0.5030 -0.8961 27 1 -0.3633 -1.0276 0.0125 28 1 -0.3633 0.5248 0.8837 29 1 2.5886 1.6832 -0.7446 30 1 1.5368 4.2862 2.9138 31 1 2.6536 6.5281 2.4458 32 1 4.4677 7.6620 0.8913 33 1 5.9285 7.3949 -1.1652 34 1 5.0519 5.8273 -1.5842 35 1 2.8594 7.0943 -1.7406 36 1 3.7350 8.6624 -1.3215 37 1 1.4481 -1.6634 -1.4208 38 1 2.1929 -0.1699 -2.0794 39 1 4.2432 -0.5985 -1.0590 40 1 3.6665 -2.2884 -1.0391 41 1 6.6963 -2.3064 -0.5974 42 1 2.1554 -0.1714 2.0839 43 1 1.4512 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046768582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = 29.867453 kcal Electronic energy + Delta-G solvation = -24781.514867 eV Core-core repulsion = 21340.072684 eV Total energy + Delta-G solvation = -3441.442183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30469 -39.54845 -38.78545 -37.30210 -35.70539 -33.76844 -31.97495 -30.65094 -30.13864 -27.53955 -26.49310 -25.37151 -23.35919 -23.04689 -22.65888 -22.09641 -20.63957 -20.33438 -19.15808 -18.68436 -17.33215 -16.87745 -16.61574 -16.51542 -16.19210 -15.86081 -15.59372 -15.29033 -14.95219 -14.42929 -14.10301 -14.03641 -13.85053 -13.57985 -13.44021 -13.35776 -13.14396 -12.97342 -12.83858 -12.77641 -12.45304 -12.16344 -12.07023 -12.03159 -11.90451 -11.72724 -11.67639 -11.57434 -11.34425 -10.85620 -10.72261 -10.11713 -9.59015 -9.50020 -8.87822 -7.87053 -5.20761 -0.53506 0.41445 0.87458 1.35833 1.42216 1.43731 1.52541 2.07392 2.25419 2.47049 2.94792 3.31093 3.46505 3.50472 3.67930 3.83360 3.89690 4.01927 4.03324 4.15896 4.28937 4.34254 4.48591 4.61325 4.66453 4.74029 4.74818 4.84522 4.90700 4.95575 4.98856 5.02209 5.05576 5.10254 5.17970 5.19431 5.32909 5.37524 5.40921 5.59346 5.65407 5.74763 6.18581 6.48785 7.10374 7.15604 7.75773 8.40308 9.22880 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.004162 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.165429 B = 6726.645063 C = 7812.341326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.164 3.836 3 N -0.696 5.696 4 C 0.589 3.411 5 O -0.565 6.565 6 C -0.301 4.301 7 C -0.054 4.054 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.104 4.104 11 C -0.180 4.180 12 C -0.154 4.154 13 S 0.219 5.781 14 C -0.129 4.129 15 C 0.185 3.815 16 N -0.621 5.621 17 C -0.244 4.244 18 H 0.067 0.933 19 C -0.057 4.057 20 N -0.944 5.944 21 Si 0.973 3.027 22 H -0.284 1.284 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.128 3.872 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.401 0.599 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.142 0.858 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.016 0.984 40 H 0.011 0.989 41 H 0.248 0.752 42 H 0.030 0.970 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 20.069 -5.364 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.078 3.922 3 N -0.346 5.346 4 C 0.376 3.624 5 O -0.446 6.446 6 C -0.421 4.421 7 C -0.088 4.088 8 C -0.188 4.188 9 C -0.277 4.277 10 C -0.124 4.124 11 C -0.218 4.218 12 C -0.192 4.192 13 S 0.488 5.512 14 C -0.167 4.167 15 C 0.060 3.940 16 N -0.347 5.347 17 C -0.374 4.374 18 H 0.085 0.915 19 C -0.250 4.250 20 N -0.593 5.593 21 Si 0.801 3.199 22 H -0.211 1.211 23 H -0.214 1.214 24 H -0.203 1.203 25 C 0.002 3.998 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.236 0.764 30 H 0.167 0.833 31 H 0.187 0.813 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.794 19.148 -6.129 21.222 hybrid contribution 0.746 -0.114 1.942 2.083 sum -6.048 19.033 -4.187 20.405 Atomic orbital electron populations 1.21922 0.91583 1.03382 1.02888 1.21457 0.94370 0.80272 0.96151 1.45677 1.54113 1.12554 1.22247 1.17215 0.79314 0.83882 0.81960 1.90733 1.41240 1.76682 1.35950 1.24617 1.13894 0.99113 1.04484 1.20907 0.97891 0.91700 0.98306 1.20039 1.01095 0.98961 0.98660 1.23896 1.04040 0.99794 0.99971 1.20667 1.03096 0.95354 0.93276 1.23228 0.96389 1.02576 0.99591 1.23237 0.97804 1.01523 0.96594 1.82859 1.46175 1.02662 1.19470 1.23129 0.97019 1.00097 0.96469 1.20947 0.92812 0.97511 0.82681 1.44681 1.08504 1.78872 1.02652 1.19319 0.90793 1.37984 0.89257 0.91524 1.25504 0.99822 1.02153 0.97524 1.70142 1.24292 1.54440 1.10429 0.85165 0.78816 0.77946 0.77930 1.21086 1.21398 1.20270 1.21993 0.86404 0.95086 0.96343 0.90360 0.90214 0.92578 0.76368 0.83261 0.81275 0.84053 0.86029 0.89468 0.88765 0.85724 0.88486 0.88554 0.96550 0.97032 0.94248 0.95205 0.95372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.62 71.98 0.62 -3.50 16 2 C 0.16 5.93 0.82 5.00 0.00 5.93 16 3 N -0.70 -24.43 5.17 -420.62 -2.17 -26.61 16 4 C 0.59 21.91 7.17 86.42 0.62 22.53 16 5 O -0.56 -24.18 13.61 -4.34 -0.06 -24.24 16 6 C -0.30 -9.38 6.45 24.07 0.16 -9.23 16 7 C -0.05 -1.49 10.01 21.71 0.22 -1.27 16 8 C -0.16 -3.40 9.99 21.08 0.21 -3.18 16 9 C -0.16 -3.27 5.93 24.68 0.15 -3.12 16 10 C -0.10 -1.54 6.19 -11.54 -0.07 -1.61 16 11 C -0.18 -2.44 10.01 30.62 0.31 -2.14 16 12 C -0.15 -1.79 10.24 30.62 0.31 -1.48 16 13 S 0.22 5.34 20.82 -56.49 -1.18 4.16 16 14 C -0.13 -4.47 5.99 31.78 0.19 -4.28 16 15 C 0.19 9.05 5.36 86.73 0.47 9.51 16 16 N -0.62 -33.47 3.39 -691.98 -2.35 -35.82 16 17 C -0.24 -14.55 10.28 84.04 0.86 -13.68 16 18 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.06 -3.31 5.49 84.86 0.47 -2.84 16 20 N -0.94 -56.81 10.31 21.65 0.22 -56.59 16 21 Si 0.97 47.35 29.55 68.60 2.03 49.37 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.13 5.92 6.11 86.86 0.53 6.45 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 2.12 8.13 -2.39 -0.02 2.10 16 28 H 0.06 1.87 6.45 -2.38 -0.02 1.86 16 29 H 0.40 12.69 7.60 -92.71 -0.70 11.99 16 30 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.40 7.20 -2.39 -0.02 1.38 16 35 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 2.99 8.04 -2.39 -0.02 2.97 16 38 H 0.10 2.75 8.05 -2.39 -0.02 2.73 16 39 H 0.02 0.88 7.38 -2.39 -0.02 0.86 16 40 H 0.01 0.63 7.51 -2.39 -0.02 0.61 16 41 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 42 H 0.03 1.53 6.31 -2.39 -0.02 1.51 16 43 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 Total: -1.00 -73.52 360.50 1.85 -71.67 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.32 Total: 19.96 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 5.04 Total: -1.92 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -4.30 Total: -119.01 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.06 Total: -24.24 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Atomic # 16 Polarization: 5.34 SS G_CDS: -1.18 Total: 4.16 kcal Total: -73.52 1.85 -71.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046768582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.538 kcal (2) G-P(sol) polarization free energy of solvation -73.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds