Wall clock time and date at job start Tue Mar 31 2020 12:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 110.63813 * 2 1 4 4 C 1.34767 * 120.00314 * 61.68798 * 3 2 1 5 5 O 1.21698 * 120.00152 * 359.97438 * 4 3 2 6 6 C 1.46585 * 119.99918 * 180.02562 * 4 3 2 7 7 C 1.35868 * 125.41923 * 179.71834 * 6 4 3 8 8 C 1.39174 * 114.00255 * 179.85592 * 7 6 4 9 9 C 1.34364 * 113.99507 * 0.44488 * 8 7 6 10 10 S 1.71481 * 111.07727 * 359.73810 * 9 8 7 11 11 C 1.52367 * 110.38225 * 179.70942 * 9 8 7 12 12 C 1.54162 * 104.90519 * 342.46353 * 11 9 8 13 13 C 1.52817 * 136.18637 * 180.14159 * 8 7 6 14 14 C 1.55153 * 110.87377 * 236.74953 * 2 1 3 15 15 C 1.55131 * 101.48647 * 205.89496 * 14 2 1 16 16 N 1.47426 * 104.71847 * 37.29562 * 15 14 2 17 17 C 1.36945 * 125.64675 * 155.81671 * 16 15 14 18 18 H 1.07997 * 119.99756 * 179.68946 * 17 16 15 19 19 C 1.38805 * 119.99878 * 359.68852 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47026 * 108.70569 * 335.55014 * 16 15 14 26 26 H 1.09007 * 109.47028 * 298.31682 * 1 2 3 27 27 H 1.09002 * 109.47138 * 58.31197 * 1 2 3 28 28 H 1.08998 * 109.47024 * 178.32089 * 1 2 3 29 29 H 0.97003 * 119.99598 * 241.68644 * 3 2 1 30 30 H 1.08000 * 122.99950 * 0.02562 * 7 6 4 31 31 H 1.08997 * 110.35523 * 101.32688 * 11 9 8 32 32 H 1.09005 * 110.35213 * 223.61073 * 11 9 8 33 33 H 1.08993 * 110.96167 * 268.59016 * 12 11 9 34 34 H 1.09006 * 110.98766 * 144.86673 * 12 11 9 35 35 H 1.08997 * 110.33345 * 316.83795 * 13 8 7 36 36 H 1.08997 * 110.33398 * 78.96862 * 13 8 7 37 37 H 1.08999 * 111.00098 * 324.13870 * 14 2 1 38 38 H 1.08999 * 111.00620 * 87.95047 * 14 2 1 39 39 H 1.08994 * 110.50226 * 278.45550 * 15 14 2 40 40 H 1.09001 * 110.34274 * 156.05220 * 15 14 2 41 41 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.87851 * 120.70448 * 25 16 15 43 43 H 1.08997 * 109.88162 * 241.71678 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7659 2.1968 1.0275 5 8 1.0833 1.8038 1.9552 6 6 2.2821 3.5687 1.0271 7 6 2.0638 4.4925 1.9992 8 6 2.6702 5.7218 1.7585 9 6 3.3545 5.7767 0.6035 10 16 3.2743 4.2816 -0.2324 11 6 3.9762 7.1556 0.4200 12 6 3.2113 8.0688 1.3986 13 6 2.7614 7.0663 2.4791 14 6 2.0828 -0.7949 -1.2124 15 6 3.4707 -1.2412 -0.6822 16 7 3.2471 -1.5460 0.7428 17 6 4.0078 -2.3898 1.5074 18 1 3.7635 -2.5433 2.5481 19 6 5.0927 -3.0479 0.9447 20 7 5.3906 -2.8605 -0.3236 21 14 6.1307 -4.1985 1.9878 22 1 7.2198 -4.7725 1.1574 23 1 6.7188 -3.4427 3.1227 24 1 5.2784 -5.2955 2.5124 25 6 2.0760 -0.7889 1.2087 26 1 -0.3633 0.4875 0.9048 27 1 -0.3633 0.5398 -0.8745 28 1 -0.3633 -1.0272 -0.0301 29 1 2.5902 1.6844 -0.7396 30 1 1.4746 4.2900 2.8814 31 1 5.0358 7.1306 0.6742 32 1 3.8394 7.4997 -0.6052 33 1 2.3518 8.5291 0.9115 34 1 3.8704 8.8276 1.8207 35 1 1.7869 7.3499 2.8765 36 1 3.4971 7.0167 3.2818 37 1 1.4514 -1.6546 -1.4365 38 1 2.1880 -0.1517 -2.0861 39 1 4.1970 -0.4355 -0.7883 40 1 3.8103 -2.1314 -1.2117 41 1 6.1490 -3.3201 -0.7167 42 1 1.3140 -1.4753 1.5782 43 1 2.3706 -0.1009 2.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046818199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:31 Heat of formation + Delta-G solvation = 26.604877 kcal Electronic energy + Delta-G solvation = -24661.869086 eV Core-core repulsion = 21220.285427 eV Total energy + Delta-G solvation = -3441.583659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.04989 -39.39420 -37.27978 -34.46140 -33.99817 -31.93799 -30.11079 -28.78365 -28.65752 -27.99385 -25.65904 -24.16133 -23.29883 -21.98669 -20.62691 -20.24914 -19.13491 -18.67081 -17.79773 -16.90571 -16.11772 -15.86424 -15.54369 -14.75772 -14.70616 -14.60715 -14.03694 -13.70307 -13.22921 -13.14732 -12.95147 -12.72178 -12.50650 -12.23508 -12.13420 -12.02807 -11.89051 -11.70543 -11.54040 -11.48487 -11.09615 -10.96226 -10.91570 -10.82211 -10.41241 -10.34335 -10.09381 -9.96384 -9.65828 -9.37834 -8.77746 -8.63687 -8.60204 -8.40569 -6.78150 -5.62017 -3.02479 0.52286 1.29078 1.87341 2.28514 3.31922 3.43670 3.44684 3.47325 3.49081 4.23189 4.27777 4.52562 4.66773 4.78965 5.01803 5.19009 5.23175 5.26558 5.38973 5.40423 5.45961 5.51762 5.57891 5.58208 5.64949 5.75123 5.83916 5.87370 6.02881 6.16473 6.18407 6.23678 6.27480 6.35548 6.45992 6.51967 6.70697 6.85940 7.14122 7.47315 7.65758 7.76197 7.86397 8.37722 8.44982 9.26215 9.86881 10.51834 11.42168 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.003356 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.152914 B = 8341.618006 C = 8968.055363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.160 3.840 3 N -0.703 5.703 4 C 0.592 3.408 5 O -0.525 6.525 6 C -0.254 4.254 7 C -0.044 4.044 8 C -0.138 4.138 9 C -0.228 4.228 10 S 0.219 5.781 11 C -0.043 4.043 12 C -0.118 4.118 13 C -0.057 4.057 14 C -0.147 4.147 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.217 4.217 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.925 5.925 21 Si 0.915 3.085 22 H -0.290 1.290 23 H -0.286 1.286 24 H -0.285 1.285 25 C 0.136 3.864 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.394 0.606 30 H 0.150 0.850 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.010 0.990 40 H 0.110 0.890 41 H 0.252 0.748 42 H 0.032 0.968 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 20.917 -2.410 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.074 3.926 3 N -0.353 5.353 4 C 0.378 3.622 5 O -0.404 6.404 6 C -0.374 4.374 7 C -0.077 4.077 8 C -0.151 4.151 9 C -0.347 4.347 10 S 0.489 5.511 11 C -0.083 4.083 12 C -0.157 4.157 13 C -0.096 4.096 14 C -0.186 4.186 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.346 4.346 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.574 5.574 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.213 1.213 24 H -0.212 1.212 25 C 0.010 3.990 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.228 0.772 30 H 0.167 0.833 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.028 0.972 40 H 0.127 0.873 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.691 19.879 -3.174 20.920 hybrid contribution 0.391 0.132 1.568 1.622 sum -5.300 20.011 -1.606 20.763 Atomic orbital electron populations 1.22039 0.94102 1.02265 1.02369 1.21398 0.93054 0.79818 0.98331 1.45869 1.53742 1.13005 1.22661 1.16799 0.80057 0.82761 0.82598 1.90792 1.38845 1.75720 1.35015 1.24381 1.11062 0.99620 1.02342 1.20175 0.98339 0.90189 0.98964 1.20360 1.01330 0.96483 0.96955 1.25640 1.06115 1.01833 1.01154 1.82871 1.47080 1.00626 1.20502 1.20854 0.99351 0.87499 1.00546 1.22282 1.00239 0.97066 0.96066 1.20986 1.02116 0.89113 0.97380 1.23406 1.01336 0.98854 0.94968 1.22000 0.89272 1.00651 0.85351 1.44505 1.30471 1.50458 1.07569 1.19055 1.06022 1.16559 0.92928 0.90597 1.24755 0.98766 1.00789 0.96480 1.69758 1.30059 1.46633 1.10998 0.86141 0.79743 0.80590 0.78981 1.21600 1.21299 1.21173 1.21607 0.90339 0.93177 0.93893 0.91012 0.93070 0.91566 0.77196 0.83259 0.89808 0.90572 0.90680 0.90089 0.90701 0.90221 0.90298 0.91930 0.97202 0.87279 0.93777 0.95054 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.41 37.16 0.31 -2.10 16 2 C 0.16 2.96 0.81 -129.99 -0.10 2.85 16 3 N -0.70 -12.01 5.14 -47.23 -0.24 -12.25 16 4 C 0.59 10.51 7.00 -12.90 -0.09 10.42 16 5 O -0.53 -10.73 13.76 5.19 0.07 -10.65 16 6 C -0.25 -3.80 6.41 -37.07 -0.24 -4.04 16 7 C -0.04 -0.60 9.99 -40.08 -0.40 -1.00 16 8 C -0.14 -1.60 6.49 -104.58 -0.68 -2.28 16 9 C -0.23 -2.52 7.10 -34.85 -0.25 -2.77 16 10 S 0.22 2.64 22.15 -107.50 -2.38 0.26 16 11 C -0.04 -0.34 6.80 -26.45 -0.18 -0.52 16 12 C -0.12 -0.76 7.11 -25.54 -0.18 -0.95 16 13 C -0.06 -0.47 6.81 -26.24 -0.18 -0.65 16 14 C -0.15 -2.71 6.11 -24.46 -0.15 -2.86 16 15 C 0.15 3.67 5.88 -2.41 -0.01 3.65 16 16 N -0.60 -15.98 3.39 -169.93 -0.58 -16.55 16 17 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 20 N -0.93 -27.06 10.08 55.49 0.56 -26.50 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.14 3.14 6.12 -3.06 -0.02 3.12 16 26 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 29 H 0.39 5.97 7.58 -40.82 -0.31 5.66 16 30 H 0.15 2.01 8.05 -52.49 -0.42 1.59 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 38 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.11 2.94 5.86 -51.93 -0.30 2.64 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16 43 H 0.03 0.87 6.48 -51.93 -0.34 0.53 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -32.69 353.93 -10.98 -43.67 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.30 Total: 3.16 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.42 Total: -4.01 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.26 Total: -55.30 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.38 Total: 0.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.69 -10.98 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046818199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.276 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds