Wall clock time and date at job start Tue Mar 31 2020 12:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33818 * 124.52488 * 2 1 4 4 C 1.37469 * 115.09928 * 179.77472 * 3 2 1 5 5 C 1.36648 * 113.29914 * 0.45123 * 4 3 2 6 6 C 1.46583 * 125.45878 * 179.83971 * 5 4 3 7 7 O 1.21705 * 120.00009 * 5.39653 * 6 5 4 8 8 N 1.34775 * 120.00165 * 185.39454 * 6 5 4 9 9 C 1.46498 * 120.00266 * 174.45110 * 8 6 5 10 10 H 1.08998 * 109.18075 * 51.70734 * 9 8 6 11 11 C 1.53033 * 109.32059 * 292.15758 * 9 8 6 12 12 C 1.53962 * 108.82647 * 295.14010 * 11 9 8 13 13 H 1.08999 * 112.99560 * 168.09351 * 12 11 9 14 14 C 1.55427 * 106.41628 * 293.82351 * 12 11 9 15 15 C 1.55168 * 100.35720 * 73.37924 * 14 12 11 16 16 H 1.08989 * 112.48890 * 162.67212 * 15 14 12 17 17 C 1.52984 * 109.32716 * 171.26799 * 9 8 6 18 18 N 1.47796 * 104.25259 * 40.55007 * 15 14 12 19 19 C 1.36931 * 125.85271 * 153.51408 * 18 15 14 20 20 H 1.07998 * 120.00398 * 19.45596 * 19 18 15 21 21 C 1.38815 * 119.99621 * 199.45194 * 19 18 15 22 22 N 1.31618 * 120.00332 * 358.45358 * 21 19 18 23 23 Si 1.86808 * 119.99786 * 178.44947 * 21 19 18 24 24 H 1.48502 * 109.46943 * 60.00340 * 23 21 19 25 25 H 1.48496 * 109.46866 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47210 * 299.99859 * 23 21 19 27 27 C 1.47077 * 108.28563 * 333.53458 * 18 15 14 28 28 S 1.70620 * 124.52086 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46690 * 299.99946 * 1 2 3 31 31 H 1.08998 * 109.47168 * 59.99852 * 1 2 3 32 32 H 1.08000 * 122.44458 * 0.04405 * 3 2 1 33 33 H 1.08004 * 123.35049 * 180.27813 * 4 3 2 34 34 H 0.97001 * 119.99959 * 354.45036 * 8 6 5 35 35 H 1.09002 * 109.58328 * 54.94703 * 11 9 8 36 36 H 1.09008 * 109.57440 * 175.20828 * 11 9 8 37 37 H 1.09008 * 111.23619 * 191.15556 * 14 12 11 38 38 H 1.09000 * 111.23541 * 315.59713 * 14 12 11 39 39 H 1.09003 * 109.53205 * 185.06483 * 17 9 8 40 40 H 1.08995 * 109.52911 * 305.28733 * 17 9 8 41 41 H 0.96996 * 120.00427 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.97805 * 241.74232 * 27 18 15 43 43 H 1.09007 * 110.00782 * 120.48139 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6215 0.8774 0.0049 5 6 3.9492 -0.4492 -0.0010 6 6 5.3123 -0.9884 -0.0011 7 8 6.2640 -0.2370 0.1034 8 7 5.5117 -2.3163 -0.1170 9 6 6.8725 -2.8448 -0.2395 10 1 7.4863 -2.4440 0.5672 11 6 7.4625 -2.4170 -1.5851 12 6 6.6523 -3.0776 -2.7154 13 1 6.8769 -2.6636 -3.6984 14 6 6.9071 -4.6067 -2.6028 15 6 6.0647 -4.9377 -1.3424 16 1 5.8551 -6.0032 -1.2491 17 6 6.8343 -4.3707 -0.1364 18 7 4.8360 -4.1326 -1.5041 19 6 3.6085 -4.4270 -0.9734 20 1 3.5299 -5.1113 -0.1416 21 6 2.4652 -3.8458 -1.5045 22 7 2.5636 -2.9884 -2.4982 23 14 0.7870 -4.2806 -0.8088 24 1 0.7386 -3.9176 0.6304 25 1 -0.2630 -3.5313 -1.5444 26 1 0.5513 -5.7390 -0.9597 27 6 5.1576 -2.9612 -2.3333 28 16 2.4739 -1.4058 -0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8429 2.0964 0.0007 33 1 4.3550 1.6701 0.0099 34 1 4.7541 -2.9221 -0.1192 35 1 7.4060 -1.3327 -1.6807 36 1 8.5034 -2.7352 -1.6452 37 1 6.5311 -5.1352 -3.4789 38 1 7.9634 -4.8199 -2.4390 39 1 7.8518 -4.7616 -0.1368 40 1 6.3315 -4.6611 0.7860 41 1 1.7648 -2.5820 -2.8691 42 1 4.9884 -2.0458 -1.7663 43 1 4.5422 -2.9608 -3.2330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047010848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:18 Heat of formation + Delta-G solvation = 69.750625 kcal Electronic energy + Delta-G solvation = -27204.520452 eV Core-core repulsion = 23764.807733 eV Total energy + Delta-G solvation = -3439.712719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70422 -38.14123 -36.79854 -33.79668 -33.14584 -31.53789 -30.80715 -30.40325 -28.15154 -26.38333 -25.31620 -23.24258 -23.05118 -21.82935 -20.36471 -19.70144 -18.80347 -18.30727 -17.33043 -16.87454 -15.53042 -15.40806 -14.87490 -14.67035 -14.42508 -13.88503 -13.67976 -13.48196 -12.96641 -12.70488 -12.58936 -12.48708 -12.29554 -11.89973 -11.86738 -11.77807 -11.64827 -11.49146 -11.45914 -11.28486 -11.17339 -10.94322 -10.71580 -10.25871 -9.96880 -9.76803 -9.75530 -9.63022 -9.38944 -9.10458 -8.90464 -7.99124 -7.70720 -7.41681 -6.80986 -5.96482 -3.42129 1.27905 2.28802 2.71418 3.04953 3.17022 3.23154 3.30220 3.96657 4.18220 4.21435 5.10349 5.20895 5.28692 5.29390 5.45594 5.56816 5.60087 5.73591 5.76739 5.81454 5.89772 5.91522 5.97300 6.06889 6.11033 6.16126 6.24869 6.27758 6.28544 6.45401 6.59446 6.62736 6.70969 6.80430 6.85381 6.91205 6.94304 7.04815 7.40418 7.43071 7.57817 7.75806 8.09214 8.60596 8.93554 9.17013 9.50453 10.24874 11.02832 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.008087 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.533258 B = 3461.683374 C = 4852.411887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.254 4.254 3 C -0.166 4.166 4 C -0.081 4.081 5 C -0.276 4.276 6 C 0.579 3.421 7 O -0.568 6.568 8 N -0.694 5.694 9 C 0.162 3.838 10 H 0.061 0.939 11 C -0.124 4.124 12 C -0.117 4.117 13 H 0.075 0.925 14 C -0.125 4.125 15 C 0.148 3.852 16 H 0.069 0.931 17 C -0.140 4.140 18 N -0.591 5.591 19 C -0.259 4.259 20 H 0.080 0.920 21 C 0.022 3.978 22 N -0.878 5.878 23 Si 0.861 3.139 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.273 1.273 27 C 0.132 3.868 28 S 0.329 5.671 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.432 0.568 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.261 0.739 42 H 0.062 0.938 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 0.865 3.177 3.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.375 4.375 3 C -0.198 4.198 4 C -0.115 4.115 5 C -0.398 4.398 6 C 0.366 3.634 7 O -0.451 6.451 8 N -0.360 5.360 9 C 0.057 3.943 10 H 0.079 0.921 11 C -0.163 4.163 12 C -0.136 4.136 13 H 0.094 0.906 14 C -0.164 4.164 15 C 0.040 3.960 16 H 0.087 0.913 17 C -0.181 4.181 18 N -0.318 5.318 19 C -0.388 4.388 20 H 0.098 0.902 21 C -0.179 4.179 22 N -0.521 5.521 23 Si 0.688 3.312 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.199 1.199 27 C 0.008 3.992 28 S 0.602 5.398 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.287 0.713 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.420 -0.180 3.185 3.492 hybrid contribution -0.984 1.147 0.042 1.512 sum 0.436 0.967 3.227 3.396 Atomic orbital electron populations 1.20243 0.88817 1.02269 1.02264 1.24629 1.01521 1.00885 1.10502 1.19599 0.92666 0.98612 1.08895 1.20409 0.95632 0.94901 1.00532 1.24739 0.98168 0.98292 1.18562 1.17073 0.86658 0.83104 0.76607 1.90687 1.42313 1.59296 1.52790 1.47457 1.11276 1.07059 1.70199 1.20599 0.83681 0.93356 0.96659 0.92057 1.22082 0.98030 1.01136 0.95023 1.22761 0.98850 0.94891 0.97096 0.90648 1.22946 0.98364 0.96383 0.98686 1.21665 0.87352 0.94897 0.92047 0.91345 1.22515 1.00341 0.94326 1.00883 1.44882 1.04774 1.22430 1.59669 1.19039 0.82110 1.26346 1.11318 0.90240 1.24956 0.97153 0.99128 0.96713 1.69883 1.28128 1.29047 1.25044 0.86883 0.85077 0.79787 0.79427 1.19385 1.20535 1.19854 1.22256 0.89181 0.91183 0.96607 1.84627 0.92604 1.02169 1.60360 0.92161 0.91184 0.91093 0.85525 0.84410 0.71330 0.91331 0.92321 0.92048 0.92238 0.91617 0.92082 0.92839 0.92086 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.33 36.01 0.37 -0.78 16 2 C -0.25 -4.62 6.28 -35.86 -0.23 -4.85 16 3 C -0.17 -2.92 10.00 -41.41 -0.41 -3.33 16 4 C -0.08 -1.57 10.02 -40.44 -0.40 -1.97 16 5 C -0.28 -5.92 6.18 -36.79 -0.23 -6.15 16 6 C 0.58 13.01 5.98 -12.90 -0.08 12.93 16 7 O -0.57 -13.57 15.68 5.18 0.08 -13.49 16 8 N -0.69 -14.71 2.78 -55.14 -0.15 -14.87 16 9 C 0.16 3.04 2.73 -67.92 -0.19 2.86 16 10 H 0.06 1.14 8.01 -51.93 -0.42 0.73 16 11 C -0.12 -2.25 5.14 -26.21 -0.13 -2.39 16 12 C -0.12 -2.20 4.33 -87.93 -0.38 -2.58 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.13 -2.13 6.18 -24.30 -0.15 -2.28 16 15 C 0.15 2.73 4.30 -65.61 -0.28 2.45 16 16 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 17 C -0.14 -2.35 5.41 -26.28 -0.14 -2.49 16 18 N -0.59 -12.97 1.76 -161.37 -0.28 -13.25 16 19 C -0.26 -6.07 8.25 -15.06 -0.12 -6.19 16 20 H 0.08 1.82 7.83 -52.49 -0.41 1.41 16 21 C 0.02 0.52 3.18 -17.43 -0.06 0.47 16 22 N -0.88 -21.86 9.44 55.49 0.52 -21.34 16 23 Si 0.86 18.57 27.61 -169.99 -4.69 13.88 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 C 0.13 2.96 4.27 -2.83 -0.01 2.95 16 28 S 0.33 6.81 16.10 -107.50 -1.73 5.08 16 29 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.14 2.52 8.06 -52.48 -0.42 2.10 16 34 H 0.43 9.47 3.17 -40.82 -0.13 9.34 16 35 H 0.07 1.38 6.85 -51.93 -0.36 1.03 16 36 H 0.06 0.91 7.98 -51.92 -0.41 0.50 16 37 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.06 0.87 7.75 -51.93 -0.40 0.46 16 39 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 42 H 0.06 1.47 3.68 -58.46 -0.22 1.26 16 43 H 0.07 1.68 6.46 -51.92 -0.34 1.34 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -26.28 328.39 -9.79 -36.07 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -6.03 Total: 14.34 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.44 Total: -11.36 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.09 Total: -49.46 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.69 Total: 13.88 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.73 Total: 5.08 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.28 -9.79 -36.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047010848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.818 kcal (2) G-P(sol) polarization free energy of solvation -26.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds