Wall clock time and date at job start Tue Mar 31 2020 12:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33818 * 124.52488 * 2 1 4 4 C 1.37469 * 115.09928 * 179.77472 * 3 2 1 5 5 C 1.36648 * 113.29914 * 0.45123 * 4 3 2 6 6 C 1.46583 * 125.45878 * 179.83971 * 5 4 3 7 7 O 1.21705 * 120.00009 * 5.39653 * 6 5 4 8 8 N 1.34775 * 120.00165 * 185.39454 * 6 5 4 9 9 C 1.46498 * 120.00266 * 174.45110 * 8 6 5 10 10 H 1.08998 * 109.18075 * 51.70734 * 9 8 6 11 11 C 1.53033 * 109.32059 * 292.15758 * 9 8 6 12 12 C 1.53962 * 108.82647 * 295.14010 * 11 9 8 13 13 H 1.08999 * 112.99560 * 168.09351 * 12 11 9 14 14 C 1.55427 * 106.41628 * 293.82351 * 12 11 9 15 15 C 1.55168 * 100.35720 * 73.37924 * 14 12 11 16 16 H 1.08989 * 112.48890 * 162.67212 * 15 14 12 17 17 C 1.52984 * 109.32716 * 171.26799 * 9 8 6 18 18 N 1.47796 * 104.25259 * 40.55007 * 15 14 12 19 19 C 1.36931 * 125.85271 * 153.51408 * 18 15 14 20 20 H 1.07998 * 120.00398 * 19.45596 * 19 18 15 21 21 C 1.38815 * 119.99621 * 199.45194 * 19 18 15 22 22 N 1.31618 * 120.00332 * 358.45358 * 21 19 18 23 23 Si 1.86808 * 119.99786 * 178.44947 * 21 19 18 24 24 H 1.48502 * 109.46943 * 60.00340 * 23 21 19 25 25 H 1.48496 * 109.46866 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47210 * 299.99859 * 23 21 19 27 27 C 1.47077 * 108.28563 * 333.53458 * 18 15 14 28 28 S 1.70620 * 124.52086 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46690 * 299.99946 * 1 2 3 31 31 H 1.08998 * 109.47168 * 59.99852 * 1 2 3 32 32 H 1.08000 * 122.44458 * 0.04405 * 3 2 1 33 33 H 1.08004 * 123.35049 * 180.27813 * 4 3 2 34 34 H 0.97001 * 119.99959 * 354.45036 * 8 6 5 35 35 H 1.09002 * 109.58328 * 54.94703 * 11 9 8 36 36 H 1.09008 * 109.57440 * 175.20828 * 11 9 8 37 37 H 1.09008 * 111.23619 * 191.15556 * 14 12 11 38 38 H 1.09000 * 111.23541 * 315.59713 * 14 12 11 39 39 H 1.09003 * 109.53205 * 185.06483 * 17 9 8 40 40 H 1.08995 * 109.52911 * 305.28733 * 17 9 8 41 41 H 0.96996 * 120.00427 * 180.02562 * 22 21 19 42 42 H 1.08998 * 109.97805 * 241.74232 * 27 18 15 43 43 H 1.09007 * 110.00782 * 120.48139 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6215 0.8774 0.0049 5 6 3.9492 -0.4492 -0.0010 6 6 5.3123 -0.9884 -0.0011 7 8 6.2640 -0.2370 0.1034 8 7 5.5117 -2.3163 -0.1170 9 6 6.8725 -2.8448 -0.2395 10 1 7.4863 -2.4440 0.5672 11 6 7.4625 -2.4170 -1.5851 12 6 6.6523 -3.0776 -2.7154 13 1 6.8769 -2.6636 -3.6984 14 6 6.9071 -4.6067 -2.6028 15 6 6.0647 -4.9377 -1.3424 16 1 5.8551 -6.0032 -1.2491 17 6 6.8343 -4.3707 -0.1364 18 7 4.8360 -4.1326 -1.5041 19 6 3.6085 -4.4270 -0.9734 20 1 3.5299 -5.1113 -0.1416 21 6 2.4652 -3.8458 -1.5045 22 7 2.5636 -2.9884 -2.4982 23 14 0.7870 -4.2806 -0.8088 24 1 0.7386 -3.9176 0.6304 25 1 -0.2630 -3.5313 -1.5444 26 1 0.5513 -5.7390 -0.9597 27 6 5.1576 -2.9612 -2.3333 28 16 2.4739 -1.4058 -0.0006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8429 2.0964 0.0007 33 1 4.3550 1.6701 0.0099 34 1 4.7541 -2.9221 -0.1192 35 1 7.4060 -1.3327 -1.6807 36 1 8.5034 -2.7352 -1.6452 37 1 6.5311 -5.1352 -3.4789 38 1 7.9634 -4.8199 -2.4390 39 1 7.8518 -4.7616 -0.1368 40 1 6.3315 -4.6611 0.7860 41 1 1.7648 -2.5820 -2.8691 42 1 4.9884 -2.0458 -1.7663 43 1 4.5422 -2.9608 -3.2330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047010848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:17 Heat of formation + Delta-G solvation = 57.132756 kcal Electronic energy + Delta-G solvation = -27205.067604 eV Core-core repulsion = 23764.807733 eV Total energy + Delta-G solvation = -3440.259871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27023 -39.74618 -38.31640 -35.49258 -34.76868 -32.97618 -32.39718 -31.93155 -29.68979 -27.84105 -26.98555 -24.84981 -24.49789 -23.30433 -21.92566 -21.30632 -20.36989 -19.82028 -18.91806 -18.53894 -17.11608 -16.98937 -16.49961 -16.30673 -16.05771 -15.38075 -15.28937 -14.79482 -14.47806 -14.28073 -13.97314 -13.92088 -13.88934 -13.41521 -13.35971 -13.29544 -13.15079 -12.99761 -12.93347 -12.80774 -12.63575 -12.54081 -12.26434 -11.93077 -11.68276 -11.34379 -11.32966 -11.09083 -10.94519 -10.74975 -10.62015 -9.52260 -9.29202 -9.03918 -8.53876 -7.76371 -5.23208 -0.25913 0.72111 1.20610 1.44051 1.49045 1.55423 1.56872 2.33445 2.45159 2.63196 3.34232 3.66915 3.81884 3.96345 3.98990 4.07754 4.19823 4.33390 4.36926 4.46168 4.47785 4.53548 4.66979 4.68697 4.71047 4.78913 4.87079 4.91651 5.02388 5.07192 5.14781 5.18162 5.27115 5.32320 5.37304 5.43108 5.52081 5.61240 5.62127 5.80491 5.85652 5.95560 6.29527 6.91896 7.13769 7.48882 7.77332 8.49477 9.21364 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.008087 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.533258 B = 3461.683374 C = 4852.411887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.244 4.244 3 C -0.165 4.165 4 C -0.078 4.078 5 C -0.306 4.306 6 C 0.571 3.429 7 O -0.594 6.594 8 N -0.694 5.694 9 C 0.151 3.849 10 H 0.063 0.937 11 C -0.115 4.115 12 C -0.116 4.116 13 H 0.080 0.920 14 C -0.111 4.111 15 C 0.138 3.862 16 H 0.075 0.925 17 C -0.129 4.129 18 N -0.601 5.601 19 C -0.265 4.265 20 H 0.080 0.920 21 C -0.002 4.002 22 N -0.898 5.898 23 Si 0.892 3.108 24 H -0.255 1.255 25 H -0.285 1.285 26 H -0.276 1.276 27 C 0.138 3.862 28 S 0.283 5.717 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.429 0.571 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.250 0.750 42 H 0.043 0.957 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 0.689 3.837 4.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.365 4.365 3 C -0.195 4.195 4 C -0.113 4.113 5 C -0.428 4.428 6 C 0.359 3.641 7 O -0.479 6.479 8 N -0.358 5.358 9 C 0.046 3.954 10 H 0.081 0.919 11 C -0.153 4.153 12 C -0.135 4.135 13 H 0.098 0.902 14 C -0.149 4.149 15 C 0.032 3.968 16 H 0.093 0.907 17 C -0.169 4.169 18 N -0.328 5.328 19 C -0.394 4.394 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.542 5.542 23 Si 0.719 3.281 24 H -0.180 1.180 25 H -0.211 1.211 26 H -0.203 1.203 27 C 0.013 3.987 28 S 0.556 5.444 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.181 0.819 33 H 0.163 0.837 34 H 0.283 0.717 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.929 -0.395 3.860 4.334 hybrid contribution -1.170 1.267 -0.150 1.731 sum 0.760 0.872 3.710 3.886 Atomic orbital electron populations 1.20406 0.86235 1.02590 1.04550 1.25037 1.03147 0.99537 1.08787 1.19905 0.91662 1.00146 1.07817 1.20740 0.96966 0.94407 0.99202 1.24819 0.97960 0.99169 1.20824 1.17312 0.86936 0.83481 0.76397 1.90644 1.43063 1.59805 1.54436 1.47569 1.12272 1.06624 1.69304 1.20897 0.82594 0.94816 0.97060 0.91922 1.22004 0.99767 0.99360 0.94156 1.22731 0.96344 0.96827 0.97635 0.90159 1.22903 1.00233 0.94232 0.97576 1.21924 0.86312 0.94931 0.93646 0.90666 1.22442 1.02274 0.92477 0.99673 1.44975 1.05458 1.22952 1.59382 1.19196 0.82981 1.25853 1.11373 0.90182 1.25264 0.98885 0.99092 0.96963 1.70062 1.27692 1.30135 1.26323 0.86371 0.82894 0.79053 0.79750 1.18022 1.21086 1.20259 1.22019 0.91090 0.90964 0.94607 1.84623 0.93548 1.04363 1.61915 0.92865 0.88065 0.89413 0.81896 0.83660 0.71749 0.94042 0.88760 0.92689 0.88434 0.87637 0.92411 0.93930 0.93970 0.95833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.16 10.33 71.24 0.74 -1.43 16 2 C -0.24 -8.54 6.28 24.68 0.15 -8.38 16 3 C -0.16 -5.50 10.00 21.08 0.21 -5.28 16 4 C -0.08 -3.02 10.02 21.72 0.22 -2.80 16 5 C -0.31 -13.42 6.18 24.08 0.15 -13.27 16 6 C 0.57 26.30 5.98 86.42 0.52 26.82 16 7 O -0.59 -29.04 15.68 -4.36 -0.07 -29.11 16 8 N -0.69 -29.72 2.78 -446.57 -1.24 -30.97 16 9 C 0.15 5.47 2.73 45.00 0.12 5.59 16 10 H 0.06 2.26 8.01 -2.39 -0.02 2.24 16 11 C -0.11 -3.97 5.14 30.93 0.16 -3.81 16 12 C -0.12 -4.26 4.33 -9.05 -0.04 -4.30 16 13 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 14 C -0.11 -3.48 6.18 32.17 0.20 -3.28 16 15 C 0.14 4.83 4.30 45.79 0.20 5.03 16 16 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 17 C -0.13 -3.96 5.41 30.89 0.17 -3.79 16 18 N -0.60 -26.40 1.76 -664.46 -1.17 -27.57 16 19 C -0.26 -12.54 8.25 84.04 0.69 -11.84 16 20 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 21 C 0.00 -0.12 3.18 84.86 0.27 0.15 16 22 N -0.90 -46.24 9.44 21.65 0.20 -46.04 16 23 Si 0.89 38.24 27.61 68.60 1.89 40.13 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 27 C 0.14 6.32 4.27 86.85 0.37 6.70 16 28 S 0.28 11.82 16.10 -56.49 -0.91 10.91 16 29 H 0.05 1.52 8.11 -2.39 -0.02 1.50 16 30 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.15 5.28 8.06 -2.91 -0.02 5.26 16 34 H 0.43 19.07 3.17 -92.71 -0.29 18.78 16 35 H 0.04 1.66 6.85 -2.39 -0.02 1.65 16 36 H 0.09 2.59 7.98 -2.38 -0.02 2.57 16 37 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.10 2.35 7.75 -2.39 -0.02 2.33 16 39 H 0.11 2.44 8.00 -2.39 -0.02 2.42 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.25 12.94 8.31 -92.71 -0.77 12.17 16 42 H 0.04 2.11 3.68 -15.29 -0.06 2.06 16 43 H 0.02 1.27 6.46 -2.38 -0.02 1.25 16 Total: -1.00 -59.22 328.39 3.52 -55.70 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: 0.69 Total: 40.85 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.12 Total: -13.92 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -2.21 Total: -104.57 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.07 Total: -29.11 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.89 Total: 40.13 kcal Atomic # 16 Polarization: 11.82 SS G_CDS: -0.91 Total: 10.91 kcal Total: -59.22 3.52 -55.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047010848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.833 kcal (2) G-P(sol) polarization free energy of solvation -59.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds