Wall clock time and date at job start Tue Mar 31 2020 12:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32760 * 123.45586 * 2 1 4 4 S 1.75510 * 110.57525 * 180.02562 * 3 2 1 5 5 C 1.70449 * 92.44463 * 359.80465 * 4 3 2 6 6 C 1.36012 * 110.81346 * 0.34391 * 5 4 3 7 7 C 1.47194 * 123.46054 * 179.85294 * 6 5 4 8 8 O 1.21631 * 120.00349 * 184.28708 * 7 6 5 9 9 N 1.34782 * 119.99721 * 4.29382 * 7 6 5 10 10 C 1.46498 * 119.99811 * 175.40459 * 9 7 6 11 11 H 1.08992 * 109.18145 * 52.26951 * 10 9 7 12 12 C 1.53052 * 109.26279 * 292.67098 * 10 9 7 13 13 C 1.53965 * 108.89038 * 295.06643 * 12 10 9 14 14 H 1.09006 * 112.99939 * 168.13719 * 13 12 10 15 15 C 1.55432 * 106.41835 * 293.86847 * 13 12 10 16 16 C 1.55168 * 100.35121 * 73.37511 * 15 13 12 17 17 H 1.09005 * 113.04953 * 162.99235 * 16 15 13 18 18 C 1.52987 * 109.32523 * 171.83248 * 10 9 7 19 19 N 1.47787 * 104.25735 * 40.55015 * 16 15 13 20 20 C 1.36934 * 125.85587 * 153.55623 * 19 16 15 21 21 H 1.08005 * 120.00356 * 11.75171 * 20 19 16 22 22 C 1.38818 * 120.00156 * 191.74777 * 20 19 16 23 23 N 1.31613 * 119.99854 * 3.29010 * 22 20 19 24 24 Si 1.86794 * 120.00170 * 183.28757 * 22 20 19 25 25 H 1.48507 * 109.47079 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47434 * 119.99913 * 24 22 20 27 27 H 1.48500 * 109.47302 * 240.00077 * 24 22 20 28 28 C 1.47079 * 108.28765 * 333.53922 * 19 16 15 29 29 H 1.08998 * 109.47205 * 269.97231 * 1 2 3 30 30 H 1.09003 * 109.47284 * 29.97651 * 1 2 3 31 31 H 1.09001 * 109.47115 * 149.97173 * 1 2 3 32 32 H 1.08002 * 124.71727 * 0.02562 * 3 2 1 33 33 H 1.07997 * 124.59384 * 180.22106 * 5 4 3 34 34 H 0.96997 * 119.99733 * 355.40122 * 9 7 6 35 35 H 1.09002 * 109.51259 * 175.26747 * 12 10 9 36 36 H 1.08990 * 109.69427 * 54.98021 * 12 10 9 37 37 H 1.09000 * 111.23288 * 315.60073 * 15 13 12 38 38 H 1.08996 * 111.23630 * 191.15320 * 15 13 12 39 39 H 1.09005 * 109.53000 * 305.28990 * 18 10 9 40 40 H 1.09000 * 109.53544 * 185.13679 * 18 10 9 41 41 H 0.96997 * 120.00179 * 179.97438 * 23 22 20 42 42 H 1.09003 * 109.97686 * 120.45367 * 28 19 16 43 43 H 1.08997 * 109.97393 * 241.73654 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1076 0.0000 4 16 3.9499 0.7164 -0.0007 5 6 3.6411 -0.9599 0.0048 6 6 2.3033 -1.2049 -0.0006 7 6 1.7262 -2.5590 -0.0009 8 8 0.5218 -2.7069 -0.0845 9 7 2.5324 -3.6351 0.0918 10 6 1.9539 -4.9772 0.1930 11 1 1.2411 -5.1221 -0.6187 12 6 1.2309 -5.1155 1.5349 13 6 2.2657 -5.0194 2.6709 14 1 1.8094 -4.9032 3.6540 15 6 3.1759 -6.2729 2.5433 16 6 4.0080 -5.8871 1.2917 17 1 4.9139 -6.4831 1.1811 18 6 3.0687 -6.0189 0.0799 19 7 4.2970 -4.4495 1.4758 20 6 5.3702 -3.7744 0.9585 21 1 5.9904 -4.2406 0.2072 22 6 5.6611 -2.4907 1.3997 23 7 4.9450 -1.9473 2.3610 24 14 7.0687 -1.5348 0.6291 25 1 7.7119 -2.3626 -0.4229 26 1 6.5448 -0.2845 0.0230 27 1 8.0684 -1.1972 1.6741 28 6 3.2340 -3.8681 2.3097 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 1.8374 2.1102 0.0004 33 1 4.4044 -1.7239 0.0097 34 1 3.4957 -3.5209 0.0914 35 1 0.7281 -6.0816 1.5797 36 1 0.4971 -4.3167 1.6407 37 1 2.5865 -7.1721 2.3637 38 1 3.8126 -6.3894 3.4202 39 1 3.6322 -5.8514 -0.8379 40 1 2.6335 -7.0181 0.0632 41 1 5.1484 -1.0505 2.6696 42 1 3.6629 -3.4437 3.2174 43 1 2.7034 -3.0964 1.7520 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047044953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:41 Heat of formation + Delta-G solvation = 73.186455 kcal Electronic energy + Delta-G solvation = -27480.735432 eV Core-core repulsion = 24041.171702 eV Total energy + Delta-G solvation = -3439.563730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76297 -38.32645 -36.27817 -33.87373 -33.29559 -30.84989 -30.72135 -30.03312 -27.88925 -26.89853 -25.33788 -23.64134 -23.23026 -21.67728 -20.04635 -19.66844 -18.68547 -18.06481 -17.31298 -16.79951 -16.14606 -15.31583 -15.00187 -14.60821 -14.17029 -13.70224 -13.56790 -13.24121 -12.68043 -12.59147 -12.54548 -12.40463 -12.23633 -12.03006 -11.84139 -11.70150 -11.63019 -11.53007 -11.44791 -11.37548 -10.95135 -10.81635 -10.62789 -10.32425 -10.04873 -9.90622 -9.74425 -9.62141 -9.37563 -8.87972 -8.81628 -8.17675 -7.74494 -7.38560 -6.94552 -5.96354 -3.40279 1.60854 2.24812 2.62375 2.67731 3.13575 3.24083 3.29181 4.11201 4.17404 4.32277 5.04453 5.20581 5.27775 5.39665 5.48232 5.60419 5.66624 5.81599 5.86566 5.92279 5.94815 6.04471 6.12270 6.16318 6.18337 6.25196 6.28313 6.30778 6.47199 6.49979 6.55633 6.60754 6.72023 6.82817 6.88682 6.92468 6.94106 7.13165 7.40420 7.53202 7.62139 7.75295 8.06472 8.70917 8.93804 9.27780 9.48989 10.22589 11.03891 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.008577 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.636200 B = 3263.765358 C = 4922.761130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.046 4.046 3 C -0.272 4.272 4 S 0.144 5.856 5 C -0.153 4.153 6 C -0.174 4.174 7 C 0.571 3.429 8 O -0.572 6.572 9 N -0.693 5.693 10 C 0.163 3.837 11 H 0.060 0.940 12 C -0.124 4.124 13 C -0.119 4.119 14 H 0.074 0.926 15 C -0.125 4.125 16 C 0.150 3.850 17 H 0.067 0.933 18 C -0.141 4.141 19 N -0.594 5.594 20 C -0.254 4.254 21 H 0.082 0.918 22 C -0.003 4.003 23 N -0.885 5.885 24 Si 0.874 3.126 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.282 1.282 28 C 0.139 3.861 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.198 0.802 34 H 0.433 0.567 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.259 0.741 42 H 0.057 0.943 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 -0.684 -3.322 5.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.058 4.058 3 C -0.406 4.406 4 S 0.409 5.591 5 C -0.291 4.291 6 C -0.190 4.190 7 C 0.358 3.642 8 O -0.455 6.455 9 N -0.357 5.357 10 C 0.058 3.942 11 H 0.078 0.922 12 C -0.162 4.162 13 C -0.138 4.138 14 H 0.093 0.907 15 C -0.164 4.164 16 C 0.042 3.958 17 H 0.085 0.915 18 C -0.182 4.182 19 N -0.320 5.320 20 C -0.383 4.383 21 H 0.100 0.900 22 C -0.203 4.203 23 N -0.528 5.528 24 Si 0.702 3.298 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.209 1.209 28 C 0.015 3.985 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.173 0.827 33 H 0.214 0.786 34 H 0.287 0.713 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.998 0.305 -3.331 4.492 hybrid contribution 0.105 -0.314 -0.004 0.331 sum -2.894 -0.009 -3.336 4.416 Atomic orbital electron populations 1.20606 0.89652 1.02992 1.02274 1.19801 0.96830 0.90416 0.98772 1.25137 0.97220 1.01787 1.16428 1.82984 1.05282 0.99535 1.71253 1.26636 1.01017 1.01869 0.99582 1.20025 0.92033 0.94098 1.12866 1.17580 0.86100 0.84222 0.76310 1.90589 1.14899 1.86961 1.53043 1.47384 1.13711 1.04347 1.70278 1.20576 0.94322 0.82769 0.96579 0.92184 1.22071 0.97908 1.01188 0.95026 1.22791 0.96311 0.97568 0.97097 0.90725 1.22936 0.98096 0.96738 0.98599 1.21634 0.94656 0.87374 0.92133 0.91506 1.22531 0.97515 0.97311 1.00812 1.44939 1.25012 1.02792 1.59259 1.19227 1.04926 0.96874 1.17244 0.89979 1.24942 0.98391 0.98515 0.98408 1.69994 1.39275 1.15738 1.27832 0.86723 0.83067 0.80802 0.79233 1.19826 1.19526 1.20869 1.22177 0.87240 0.92912 0.96148 0.91717 0.92858 0.88923 0.82691 0.78572 0.71344 0.92524 0.91166 0.92211 0.92132 0.92114 0.91734 0.92934 0.92495 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 9.61 36.01 0.35 -1.27 16 2 C -0.05 -0.88 6.01 -104.06 -0.63 -1.50 16 3 C -0.27 -4.66 10.91 28.86 0.31 -4.35 16 4 S 0.14 2.64 22.05 -107.50 -2.37 0.27 16 5 C -0.15 -3.22 8.28 29.93 0.25 -2.97 16 6 C -0.17 -3.71 5.75 -104.63 -0.60 -4.31 16 7 C 0.57 12.55 5.95 -12.62 -0.08 12.47 16 8 O -0.57 -12.99 12.96 5.25 0.07 -12.92 16 9 N -0.69 -14.47 2.76 -54.94 -0.15 -14.62 16 10 C 0.16 3.02 2.74 -67.91 -0.19 2.83 16 11 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 12 C -0.12 -2.22 5.13 -26.20 -0.13 -2.36 16 13 C -0.12 -2.23 4.33 -87.93 -0.38 -2.61 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -2.13 6.18 -24.29 -0.15 -2.28 16 16 C 0.15 2.76 4.30 -65.62 -0.28 2.48 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -2.36 5.41 -26.28 -0.14 -2.50 16 19 N -0.59 -13.01 1.76 -161.37 -0.28 -13.29 16 20 C -0.25 -5.97 8.09 -15.06 -0.12 -6.09 16 21 H 0.08 1.90 7.83 -52.48 -0.41 1.49 16 22 C 0.00 -0.08 3.04 -17.43 -0.05 -0.14 16 23 N -0.88 -22.04 9.28 55.49 0.51 -21.52 16 24 Si 0.87 18.67 28.05 -169.99 -4.77 13.91 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.45 6.10 56.52 0.35 -5.11 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.14 3.13 4.05 -2.83 -0.01 3.12 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.09 1.71 5.93 -51.93 -0.31 1.40 16 32 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.20 4.41 2.45 -52.49 -0.13 4.28 16 34 H 0.43 9.46 2.80 -40.82 -0.11 9.35 16 35 H 0.06 0.88 7.97 -51.93 -0.41 0.47 16 36 H 0.07 1.40 6.78 -51.93 -0.35 1.05 16 37 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 41 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 42 H 0.06 1.48 6.69 -51.93 -0.35 1.13 16 43 H 0.07 1.67 3.66 -57.99 -0.21 1.46 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -25.54 320.05 -9.70 -35.23 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -5.67 Total: 17.60 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.85 Total: -9.47 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.08 Total: -49.44 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.92 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.77 Total: 13.91 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.37 Total: 0.27 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.54 -9.70 -35.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047044953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.421 kcal (2) G-P(sol) polarization free energy of solvation -25.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds