Wall clock time and date at job start Tue Mar 31 2020 12:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32760 * 123.45586 * 2 1 4 4 S 1.75510 * 110.57525 * 180.02562 * 3 2 1 5 5 C 1.70449 * 92.44463 * 359.80465 * 4 3 2 6 6 C 1.36012 * 110.81346 * 0.34391 * 5 4 3 7 7 C 1.47194 * 123.46054 * 179.85294 * 6 5 4 8 8 O 1.21631 * 120.00349 * 184.28708 * 7 6 5 9 9 N 1.34782 * 119.99721 * 4.29382 * 7 6 5 10 10 C 1.46498 * 119.99811 * 175.40459 * 9 7 6 11 11 H 1.08992 * 109.18145 * 52.26951 * 10 9 7 12 12 C 1.53052 * 109.26279 * 292.67098 * 10 9 7 13 13 C 1.53965 * 108.89038 * 295.06643 * 12 10 9 14 14 H 1.09006 * 112.99939 * 168.13719 * 13 12 10 15 15 C 1.55432 * 106.41835 * 293.86847 * 13 12 10 16 16 C 1.55168 * 100.35121 * 73.37511 * 15 13 12 17 17 H 1.09005 * 113.04953 * 162.99235 * 16 15 13 18 18 C 1.52987 * 109.32523 * 171.83248 * 10 9 7 19 19 N 1.47787 * 104.25735 * 40.55015 * 16 15 13 20 20 C 1.36934 * 125.85587 * 153.55623 * 19 16 15 21 21 H 1.08005 * 120.00356 * 11.75171 * 20 19 16 22 22 C 1.38818 * 120.00156 * 191.74777 * 20 19 16 23 23 N 1.31613 * 119.99854 * 3.29010 * 22 20 19 24 24 Si 1.86794 * 120.00170 * 183.28757 * 22 20 19 25 25 H 1.48507 * 109.47079 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47434 * 119.99913 * 24 22 20 27 27 H 1.48500 * 109.47302 * 240.00077 * 24 22 20 28 28 C 1.47079 * 108.28765 * 333.53922 * 19 16 15 29 29 H 1.08998 * 109.47205 * 269.97231 * 1 2 3 30 30 H 1.09003 * 109.47284 * 29.97651 * 1 2 3 31 31 H 1.09001 * 109.47115 * 149.97173 * 1 2 3 32 32 H 1.08002 * 124.71727 * 0.02562 * 3 2 1 33 33 H 1.07997 * 124.59384 * 180.22106 * 5 4 3 34 34 H 0.96997 * 119.99733 * 355.40122 * 9 7 6 35 35 H 1.09002 * 109.51259 * 175.26747 * 12 10 9 36 36 H 1.08990 * 109.69427 * 54.98021 * 12 10 9 37 37 H 1.09000 * 111.23288 * 315.60073 * 15 13 12 38 38 H 1.08996 * 111.23630 * 191.15320 * 15 13 12 39 39 H 1.09005 * 109.53000 * 305.28990 * 18 10 9 40 40 H 1.09000 * 109.53544 * 185.13679 * 18 10 9 41 41 H 0.96997 * 120.00179 * 179.97438 * 23 22 20 42 42 H 1.09003 * 109.97686 * 120.45367 * 28 19 16 43 43 H 1.08997 * 109.97393 * 241.73654 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1076 0.0000 4 16 3.9499 0.7164 -0.0007 5 6 3.6411 -0.9599 0.0048 6 6 2.3033 -1.2049 -0.0006 7 6 1.7262 -2.5590 -0.0009 8 8 0.5218 -2.7069 -0.0845 9 7 2.5324 -3.6351 0.0918 10 6 1.9539 -4.9772 0.1930 11 1 1.2411 -5.1221 -0.6187 12 6 1.2309 -5.1155 1.5349 13 6 2.2657 -5.0194 2.6709 14 1 1.8094 -4.9032 3.6540 15 6 3.1759 -6.2729 2.5433 16 6 4.0080 -5.8871 1.2917 17 1 4.9139 -6.4831 1.1811 18 6 3.0687 -6.0189 0.0799 19 7 4.2970 -4.4495 1.4758 20 6 5.3702 -3.7744 0.9585 21 1 5.9904 -4.2406 0.2072 22 6 5.6611 -2.4907 1.3997 23 7 4.9450 -1.9473 2.3610 24 14 7.0687 -1.5348 0.6291 25 1 7.7119 -2.3626 -0.4229 26 1 6.5448 -0.2845 0.0230 27 1 8.0684 -1.1972 1.6741 28 6 3.2340 -3.8681 2.3097 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 1.8374 2.1102 0.0004 33 1 4.4044 -1.7239 0.0097 34 1 3.4957 -3.5209 0.0914 35 1 0.7281 -6.0816 1.5797 36 1 0.4971 -4.3167 1.6407 37 1 2.5865 -7.1721 2.3637 38 1 3.8126 -6.3894 3.4202 39 1 3.6322 -5.8514 -0.8379 40 1 2.6335 -7.0181 0.0632 41 1 5.1484 -1.0505 2.6696 42 1 3.6629 -3.4437 3.2174 43 1 2.7034 -3.0964 1.7520 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047044953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:41 Heat of formation + Delta-G solvation = 61.131868 kcal Electronic energy + Delta-G solvation = -27481.258158 eV Core-core repulsion = 24041.171702 eV Total energy + Delta-G solvation = -3440.086456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32058 -39.88232 -37.82091 -35.57309 -34.87949 -32.45872 -32.26212 -31.53415 -29.41546 -28.31396 -27.02898 -25.20179 -24.83152 -23.13343 -21.58940 -21.25149 -20.23044 -19.59143 -18.94351 -18.34266 -17.76791 -16.87039 -16.67250 -16.23050 -15.79113 -15.29774 -15.05608 -14.67923 -14.25239 -14.06626 -14.03259 -13.90979 -13.78311 -13.56980 -13.31053 -13.23447 -13.12483 -13.04879 -12.92705 -12.84906 -12.58978 -12.36076 -12.21481 -11.93999 -11.64958 -11.55988 -11.31255 -11.08425 -10.88300 -10.63340 -10.44160 -9.67104 -9.25323 -8.97241 -8.70044 -7.77887 -5.22526 0.07223 0.78521 1.11579 1.16944 1.41476 1.51284 1.54093 2.40632 2.53943 2.76594 3.25646 3.65464 3.82669 3.98077 4.03329 4.08298 4.28310 4.37769 4.39601 4.47216 4.52527 4.66275 4.67837 4.75464 4.80064 4.87320 4.88544 4.92608 5.01767 5.09925 5.12905 5.14742 5.28538 5.35832 5.41892 5.44903 5.51320 5.58775 5.71140 5.84723 5.92836 5.99623 6.25186 7.02156 7.14261 7.62281 7.75028 8.46052 9.20734 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.008577 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.636200 B = 3263.765358 C = 4922.761130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.071 4.071 3 C -0.252 4.252 4 S 0.164 5.836 5 C -0.174 4.174 6 C -0.194 4.194 7 C 0.562 3.438 8 O -0.588 6.588 9 N -0.694 5.694 10 C 0.153 3.847 11 H 0.062 0.938 12 C -0.114 4.114 13 C -0.118 4.118 14 H 0.079 0.921 15 C -0.112 4.112 16 C 0.139 3.861 17 H 0.073 0.927 18 C -0.130 4.130 19 N -0.603 5.603 20 C -0.260 4.260 21 H 0.082 0.918 22 C -0.029 4.029 23 N -0.904 5.904 24 Si 0.910 3.090 25 H -0.269 1.269 26 H -0.255 1.255 27 H -0.298 1.298 28 C 0.147 3.853 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.193 0.807 33 H 0.182 0.818 34 H 0.428 0.572 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.250 0.750 42 H 0.012 0.988 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -1.293 -4.049 6.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.386 4.386 4 S 0.429 5.571 5 C -0.313 4.313 6 C -0.211 4.211 7 C 0.348 3.652 8 O -0.473 6.473 9 N -0.357 5.357 10 C 0.048 3.952 11 H 0.080 0.920 12 C -0.152 4.152 13 C -0.137 4.137 14 H 0.097 0.903 15 C -0.150 4.150 16 C 0.033 3.967 17 H 0.091 0.909 18 C -0.170 4.170 19 N -0.330 5.330 20 C -0.389 4.389 21 H 0.100 0.900 22 C -0.226 4.226 23 N -0.549 5.549 24 Si 0.738 3.262 25 H -0.194 1.194 26 H -0.181 1.181 27 H -0.226 1.226 28 C 0.023 3.977 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.210 0.790 33 H 0.199 0.801 34 H 0.281 0.719 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.679 -0.338 -4.078 5.503 hybrid contribution 0.339 -0.119 0.225 0.424 sum -3.340 -0.457 -3.853 5.119 Atomic orbital electron populations 1.20551 0.88240 1.03591 1.02364 1.20061 0.98011 0.90102 1.00095 1.25523 0.96167 1.02980 1.13906 1.82784 1.06305 0.97462 1.70501 1.26530 1.00728 1.03249 1.00766 1.20321 0.92648 0.94771 1.13319 1.17835 0.86093 0.84937 0.76288 1.90561 1.15339 1.87323 1.54055 1.47489 1.13407 1.05208 1.69598 1.20844 0.95129 0.82237 0.96949 0.91963 1.21986 0.96999 1.02070 0.94130 1.22757 0.96149 0.97105 0.97695 0.90295 1.22895 0.97511 0.97055 0.97511 1.21900 0.95638 0.85402 0.93740 0.90884 1.22449 0.96416 0.98587 0.99525 1.45033 1.24492 1.04453 1.58975 1.19400 1.05141 0.97215 1.17155 0.89983 1.25295 0.99618 0.99034 0.98676 1.70176 1.40353 1.15292 1.29091 0.86154 0.80998 0.80725 0.78353 1.19397 1.18082 1.22557 1.21926 0.87744 0.94125 0.93951 0.91807 0.89569 0.90961 0.78964 0.80150 0.71934 0.89052 0.93719 0.88428 0.92807 0.92480 0.87833 0.93958 0.96999 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.88 9.61 71.24 0.68 -2.20 16 2 C -0.07 -2.66 6.01 -19.46 -0.12 -2.78 16 3 C -0.25 -8.13 10.91 66.64 0.73 -7.40 16 4 S 0.16 5.84 22.05 -56.49 -1.25 4.59 16 5 C -0.17 -7.42 8.28 67.30 0.56 -6.87 16 6 C -0.19 -8.36 5.75 -19.87 -0.11 -8.48 16 7 C 0.56 25.14 5.95 86.60 0.52 25.65 16 8 O -0.59 -27.17 12.96 -4.13 -0.05 -27.22 16 9 N -0.69 -29.23 2.76 -445.97 -1.23 -30.46 16 10 C 0.15 5.46 2.74 45.00 0.12 5.58 16 11 H 0.06 2.20 8.03 -2.39 -0.02 2.18 16 12 C -0.11 -3.89 5.13 30.94 0.16 -3.73 16 13 C -0.12 -4.31 4.33 -9.05 -0.04 -4.35 16 14 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 15 C -0.11 -3.49 6.18 32.17 0.20 -3.29 16 16 C 0.14 4.88 4.30 45.79 0.20 5.07 16 17 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 18 C -0.13 -3.98 5.41 30.89 0.17 -3.81 16 19 N -0.60 -26.47 1.76 -664.45 -1.17 -27.65 16 20 C -0.26 -12.37 8.09 84.04 0.68 -11.69 16 21 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.03 -1.40 3.04 84.86 0.26 -1.15 16 23 N -0.90 -46.56 9.28 21.65 0.20 -46.36 16 24 Si 0.91 38.69 28.05 68.60 1.92 40.62 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.26 -10.13 6.10 99.48 0.61 -9.52 16 27 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 28 C 0.15 6.74 4.05 86.85 0.35 7.09 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.09 2.17 8.13 -2.39 -0.02 2.15 16 31 H 0.07 2.65 5.93 -2.39 -0.01 2.64 16 32 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.18 8.29 2.45 -2.91 -0.01 8.28 16 34 H 0.43 18.99 2.80 -92.71 -0.26 18.73 16 35 H 0.09 2.49 7.97 -2.39 -0.02 2.48 16 36 H 0.04 1.76 6.78 -2.39 -0.02 1.75 16 37 H 0.10 2.36 7.75 -2.39 -0.02 2.34 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.10 2.40 8.00 -2.39 -0.02 2.38 16 41 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 42 H 0.01 0.64 6.69 -2.39 -0.02 0.63 16 43 H 0.05 2.57 3.66 -14.35 -0.05 2.52 16 Total: -1.00 -57.45 320.05 3.42 -54.03 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: 0.65 Total: 44.79 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 4.35 Total: -12.34 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -2.20 Total: -104.47 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.92 Total: 40.62 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -1.25 Total: 4.59 kcal Total: -57.45 3.42 -54.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047044953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.162 kcal (2) G-P(sol) polarization free energy of solvation -57.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds