Wall clock time and date at job start Tue Mar 31 2020 12:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70444 * 124.59158 * 2 1 4 4 C 1.75503 * 92.44350 * 180.02562 * 3 2 1 5 5 C 1.32770 * 110.57664 * 359.73998 * 4 3 2 6 6 C 1.36011 * 124.59151 * 180.02562 * 2 1 3 7 7 C 1.47189 * 123.45832 * 359.97249 * 6 2 1 8 8 O 1.21645 * 120.00236 * 5.11746 * 7 6 2 9 9 N 1.34774 * 119.99929 * 185.11292 * 7 6 2 10 10 C 1.46502 * 120.00193 * 182.99397 * 9 7 6 11 11 H 1.09005 * 109.32298 * 52.17744 * 10 9 7 12 12 C 1.53031 * 109.32370 * 292.54222 * 10 9 7 13 13 C 1.53964 * 108.83150 * 295.31685 * 12 10 9 14 14 H 1.09001 * 113.00045 * 168.09067 * 13 12 10 15 15 C 1.55426 * 106.41424 * 293.82814 * 13 12 10 16 16 C 1.55447 * 100.23756 * 73.18975 * 15 13 12 17 17 H 1.09001 * 113.04299 * 163.20996 * 16 15 13 18 18 C 1.52981 * 109.18620 * 171.73979 * 10 9 7 19 19 N 1.47784 * 104.11458 * 40.86945 * 16 15 13 20 20 C 1.36939 * 125.85622 * 153.44662 * 19 16 15 21 21 H 1.07995 * 119.99820 * 14.21868 * 20 19 16 22 22 C 1.38814 * 120.00312 * 194.22325 * 20 19 16 23 23 N 1.31615 * 120.00487 * 194.35657 * 22 20 19 24 24 Si 1.86804 * 119.99703 * 14.35516 * 22 20 19 25 25 H 1.48502 * 109.47125 * 174.63523 * 24 22 20 26 26 H 1.48505 * 109.46965 * 294.63235 * 24 22 20 27 27 H 1.48502 * 109.47207 * 54.63184 * 24 22 20 28 28 C 1.47077 * 108.29034 * 333.17609 * 19 16 15 29 29 H 1.09001 * 109.46738 * 270.00364 * 1 2 3 30 30 H 1.08998 * 109.46884 * 29.99251 * 1 2 3 31 31 H 1.08994 * 109.47600 * 149.99994 * 1 2 3 32 32 H 1.08007 * 124.71418 * 180.02562 * 4 3 2 33 33 H 1.08005 * 123.46138 * 180.23194 * 5 4 3 34 34 H 0.96993 * 120.00142 * 2.99178 * 9 7 6 35 35 H 1.09002 * 109.58061 * 175.51111 * 12 10 9 36 36 H 1.09003 * 109.68597 * 55.19027 * 12 10 9 37 37 H 1.09002 * 111.23490 * 191.15063 * 15 13 12 38 38 H 1.09003 * 111.23527 * 315.59129 * 15 13 12 39 39 H 1.09000 * 109.53811 * 184.97191 * 18 10 9 40 40 H 1.08999 * 109.53271 * 305.12679 * 18 10 9 41 41 H 0.97006 * 119.99706 * 354.84619 * 23 22 20 42 42 H 1.09005 * 109.97493 * 120.72069 * 28 19 16 43 43 H 1.09001 * 109.98270 * 241.96602 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6943 -0.8314 0.0046 6 6 2.2792 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0005 8 8 0.5284 -2.6568 -0.0940 9 7 2.5554 -3.5444 0.1030 10 6 2.0147 -4.9044 0.0370 11 1 1.4005 -5.0054 -0.8579 12 6 1.1535 -5.1675 1.2744 13 6 2.0531 -5.1294 2.5233 14 1 1.4877 -5.1023 3.4548 15 6 3.0176 -6.3427 2.4069 16 6 3.9642 -5.8362 1.2827 17 1 4.8973 -6.3967 1.2260 18 6 3.1718 -5.9030 -0.0276 19 7 4.1806 -4.4111 1.6086 20 6 5.2785 -3.6677 1.2661 21 1 5.9705 -4.0371 0.5238 22 6 5.5019 -2.4394 1.8729 23 7 6.3777 -1.6015 1.3600 24 14 4.5593 -1.9757 3.4176 25 1 5.0689 -0.6818 3.9387 26 1 3.1154 -1.8457 3.0961 27 1 4.7444 -3.0309 4.4460 28 6 3.0118 -3.9264 2.3582 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 4.9538 0.8937 -0.0006 33 1 4.4576 -1.5956 0.0089 34 1 3.5082 -3.4067 0.2211 35 1 0.6849 -6.1481 1.1915 36 1 0.3832 -4.4005 1.3555 37 1 3.5582 -6.5080 3.3388 38 1 2.4852 -7.2419 2.0970 39 1 2.7773 -6.9097 -0.1656 40 1 3.8253 -5.6500 -0.8625 41 1 6.9208 -1.8709 0.6027 42 1 3.3226 -3.5609 3.3371 43 1 2.5176 -3.1291 1.8030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047064094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:25 Heat of formation + Delta-G solvation = 80.672390 kcal Electronic energy + Delta-G solvation = -27544.038123 eV Core-core repulsion = 24104.799007 eV Total energy + Delta-G solvation = -3439.239116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.08503 -38.50814 -36.20239 -33.83690 -33.46484 -31.34841 -31.18145 -30.92600 -28.44482 -26.36594 -25.26111 -23.33341 -23.13846 -21.57504 -20.79927 -20.13466 -18.83324 -18.56649 -17.59421 -16.66756 -16.29816 -15.74073 -15.25372 -14.65263 -14.33177 -13.89516 -13.62808 -13.54617 -13.08519 -12.86871 -12.74066 -12.66883 -12.34588 -12.18491 -12.08922 -12.04861 -11.84784 -11.58806 -11.47973 -11.16084 -11.07828 -10.89105 -10.77664 -10.50152 -10.24009 -9.93858 -9.69286 -9.41296 -9.13196 -8.92110 -8.61507 -8.16917 -7.99019 -7.65293 -7.18585 -6.48382 -3.51514 1.36103 2.05988 2.46703 2.76010 3.38417 3.43048 3.61754 4.03782 4.12641 4.41860 4.81501 5.04634 5.12978 5.24066 5.27572 5.30793 5.54678 5.59176 5.63537 5.67724 5.70901 5.84061 5.92140 5.95297 6.01039 6.09759 6.11577 6.27013 6.31526 6.34521 6.41753 6.44586 6.53515 6.60674 6.66617 6.74125 6.77791 6.91406 6.96345 7.10647 7.34594 7.53302 8.10509 8.53624 8.81613 9.08304 9.30186 10.03277 10.93439 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.007896 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.220161 B = 3545.040075 C = 4667.974433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.152 4.152 3 S 0.120 5.880 4 C -0.218 4.218 5 C -0.092 4.092 6 C -0.169 4.169 7 C 0.566 3.434 8 O -0.567 6.567 9 N -0.696 5.696 10 C 0.161 3.839 11 H 0.064 0.936 12 C -0.126 4.126 13 C -0.103 4.103 14 H 0.082 0.918 15 C -0.129 4.129 16 C 0.151 3.849 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.606 5.606 20 C -0.349 4.349 21 H 0.084 0.916 22 C -0.002 4.002 23 N -0.909 5.909 24 Si 1.060 2.940 25 H -0.301 1.301 26 H -0.282 1.282 27 H -0.299 1.299 28 C 0.091 3.909 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.168 0.832 33 H 0.180 0.820 34 H 0.437 0.563 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.264 0.736 42 H 0.014 0.986 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 -1.885 -2.320 8.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.272 4.272 3 S 0.384 5.616 4 C -0.351 4.351 5 C -0.119 4.119 6 C -0.186 4.186 7 C 0.353 3.647 8 O -0.450 6.450 9 N -0.362 5.362 10 C 0.055 3.945 11 H 0.082 0.918 12 C -0.164 4.164 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.167 4.167 16 C 0.044 3.956 17 H 0.090 0.910 18 C -0.180 4.180 19 N -0.334 5.334 20 C -0.475 4.475 21 H 0.102 0.898 22 C -0.204 4.204 23 N -0.548 5.548 24 Si 0.894 3.106 25 H -0.229 1.229 26 H -0.209 1.209 27 H -0.228 1.228 28 C -0.033 4.033 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.186 0.814 33 H 0.197 0.803 34 H 0.293 0.707 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.934 0.822 -1.356 9.074 hybrid contribution 1.247 -2.841 -0.663 3.172 sum -7.687 -2.019 -2.018 8.200 Atomic orbital electron populations 1.20566 0.87482 1.03824 1.02926 1.24321 1.01048 0.96729 1.05116 1.82643 0.97152 1.09014 1.72777 1.25325 1.00744 0.96884 1.12194 1.22061 0.94746 0.97872 0.97241 1.20366 0.93389 0.93679 1.11197 1.17679 0.86072 0.84454 0.76534 1.90588 1.15066 1.86509 1.52790 1.47580 1.15027 1.04068 1.69568 1.20633 0.94304 0.82382 0.97172 0.91818 1.22108 0.98114 1.01726 0.94499 1.22536 0.96132 0.95953 0.97587 0.89996 1.23067 0.97595 0.96688 0.99385 1.21578 0.95538 0.86696 0.91800 0.90986 1.22388 0.97283 0.97751 1.00571 1.45289 1.17560 1.05720 1.64834 1.20275 1.03232 1.02597 1.21429 0.89830 1.25727 1.00083 0.92898 1.01719 1.70989 1.24158 1.34084 1.25616 0.83888 0.75576 0.74552 0.76547 1.22897 1.20895 1.22768 1.22875 0.88390 0.97449 0.94607 0.91056 0.92297 0.87783 0.81442 0.80345 0.70747 0.91816 0.90448 0.91804 0.91480 0.91378 0.91802 0.92519 0.96926 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 9.67 36.01 0.35 -1.07 16 2 C -0.15 -2.80 6.34 -35.11 -0.22 -3.02 16 3 S 0.12 1.96 22.97 -107.50 -2.47 -0.51 16 4 C -0.22 -4.18 11.12 28.86 0.32 -3.86 16 5 C -0.09 -1.96 8.63 -39.02 -0.34 -2.29 16 6 C -0.17 -3.51 5.96 -104.63 -0.62 -4.14 16 7 C 0.57 12.01 5.90 -12.63 -0.07 11.94 16 8 O -0.57 -12.19 12.54 5.24 0.07 -12.13 16 9 N -0.70 -14.20 2.76 -54.94 -0.15 -14.35 16 10 C 0.16 2.83 2.76 -67.92 -0.19 2.64 16 11 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 12 C -0.13 -2.10 5.13 -26.21 -0.13 -2.24 16 13 C -0.10 -1.81 4.33 -87.93 -0.38 -2.19 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.13 -2.05 6.20 -24.14 -0.15 -2.20 16 16 C 0.15 2.72 4.26 -65.79 -0.28 2.44 16 17 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 18 C -0.14 -2.25 5.40 -26.60 -0.14 -2.39 16 19 N -0.61 -13.18 1.66 -161.56 -0.27 -13.45 16 20 C -0.35 -8.56 8.16 -15.06 -0.12 -8.68 16 21 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 22 C 0.00 -0.04 3.36 -17.43 -0.06 -0.10 16 23 N -0.91 -24.14 12.76 55.49 0.71 -23.43 16 24 Si 1.06 26.18 24.19 -169.99 -4.11 22.07 16 25 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 26 H -0.28 -6.81 5.55 56.52 0.31 -6.49 16 27 H -0.30 -7.38 6.99 56.52 0.39 -6.99 16 28 C 0.09 1.96 3.18 -2.82 -0.01 1.95 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.80 5.83 -51.93 -0.30 1.50 16 32 H 0.17 3.10 8.06 -52.48 -0.42 2.68 16 33 H 0.18 4.20 3.87 -52.48 -0.20 4.00 16 34 H 0.44 9.51 2.74 -40.82 -0.11 9.40 16 35 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 36 H 0.08 1.43 6.54 -51.93 -0.34 1.09 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 39 H 0.07 0.90 8.00 -51.93 -0.42 0.48 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.26 6.97 8.73 -40.82 -0.36 6.61 16 42 H 0.01 0.31 3.50 -51.93 -0.18 0.13 16 43 H 0.08 1.86 3.02 -58.65 -0.18 1.68 16 LS Contribution 317.97 15.07 4.79 4.79 Total: -1.00 -26.92 317.97 -9.09 -36.01 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -5.60 Total: 14.22 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -2.05 Total: -13.22 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.29 Total: -51.24 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.07 Total: -12.13 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.11 Total: 22.07 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.47 Total: -0.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.92 -9.09 -36.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047064094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.687 kcal (2) G-P(sol) polarization free energy of solvation -26.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds