Wall clock time and date at job start Tue Mar 31 2020 12:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70444 * 124.59158 * 2 1 4 4 C 1.75503 * 92.44350 * 180.02562 * 3 2 1 5 5 C 1.32770 * 110.57664 * 359.73998 * 4 3 2 6 6 C 1.36011 * 124.59151 * 180.02562 * 2 1 3 7 7 C 1.47189 * 123.45832 * 359.97249 * 6 2 1 8 8 O 1.21645 * 120.00236 * 5.11746 * 7 6 2 9 9 N 1.34774 * 119.99929 * 185.11292 * 7 6 2 10 10 C 1.46502 * 120.00193 * 182.99397 * 9 7 6 11 11 H 1.09005 * 109.32298 * 52.17744 * 10 9 7 12 12 C 1.53031 * 109.32370 * 292.54222 * 10 9 7 13 13 C 1.53964 * 108.83150 * 295.31685 * 12 10 9 14 14 H 1.09001 * 113.00045 * 168.09067 * 13 12 10 15 15 C 1.55426 * 106.41424 * 293.82814 * 13 12 10 16 16 C 1.55447 * 100.23756 * 73.18975 * 15 13 12 17 17 H 1.09001 * 113.04299 * 163.20996 * 16 15 13 18 18 C 1.52981 * 109.18620 * 171.73979 * 10 9 7 19 19 N 1.47784 * 104.11458 * 40.86945 * 16 15 13 20 20 C 1.36939 * 125.85622 * 153.44662 * 19 16 15 21 21 H 1.07995 * 119.99820 * 14.21868 * 20 19 16 22 22 C 1.38814 * 120.00312 * 194.22325 * 20 19 16 23 23 N 1.31615 * 120.00487 * 194.35657 * 22 20 19 24 24 Si 1.86804 * 119.99703 * 14.35516 * 22 20 19 25 25 H 1.48502 * 109.47125 * 174.63523 * 24 22 20 26 26 H 1.48505 * 109.46965 * 294.63235 * 24 22 20 27 27 H 1.48502 * 109.47207 * 54.63184 * 24 22 20 28 28 C 1.47077 * 108.29034 * 333.17609 * 19 16 15 29 29 H 1.09001 * 109.46738 * 270.00364 * 1 2 3 30 30 H 1.08998 * 109.46884 * 29.99251 * 1 2 3 31 31 H 1.08994 * 109.47600 * 149.99994 * 1 2 3 32 32 H 1.08007 * 124.71418 * 180.02562 * 4 3 2 33 33 H 1.08005 * 123.46138 * 180.23194 * 5 4 3 34 34 H 0.96993 * 120.00142 * 2.99178 * 9 7 6 35 35 H 1.09002 * 109.58061 * 175.51111 * 12 10 9 36 36 H 1.09003 * 109.68597 * 55.19027 * 12 10 9 37 37 H 1.09002 * 111.23490 * 191.15063 * 15 13 12 38 38 H 1.09003 * 111.23527 * 315.59129 * 15 13 12 39 39 H 1.09000 * 109.53811 * 184.97191 * 18 10 9 40 40 H 1.08999 * 109.53271 * 305.12679 * 18 10 9 41 41 H 0.97006 * 119.99706 * 354.84619 * 23 22 20 42 42 H 1.09005 * 109.97493 * 120.72069 * 28 19 16 43 43 H 1.09001 * 109.98270 * 241.96602 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6943 -0.8314 0.0046 6 6 2.2792 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0005 8 8 0.5284 -2.6568 -0.0940 9 7 2.5554 -3.5444 0.1030 10 6 2.0147 -4.9044 0.0370 11 1 1.4005 -5.0054 -0.8579 12 6 1.1535 -5.1675 1.2744 13 6 2.0531 -5.1294 2.5233 14 1 1.4877 -5.1023 3.4548 15 6 3.0176 -6.3427 2.4069 16 6 3.9642 -5.8362 1.2827 17 1 4.8973 -6.3967 1.2260 18 6 3.1718 -5.9030 -0.0276 19 7 4.1806 -4.4111 1.6086 20 6 5.2785 -3.6677 1.2661 21 1 5.9705 -4.0371 0.5238 22 6 5.5019 -2.4394 1.8729 23 7 6.3777 -1.6015 1.3600 24 14 4.5593 -1.9757 3.4176 25 1 5.0689 -0.6818 3.9387 26 1 3.1154 -1.8457 3.0961 27 1 4.7444 -3.0309 4.4460 28 6 3.0118 -3.9264 2.3582 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 4.9538 0.8937 -0.0006 33 1 4.4576 -1.5956 0.0089 34 1 3.5082 -3.4067 0.2211 35 1 0.6849 -6.1481 1.1915 36 1 0.3832 -4.4005 1.3555 37 1 3.5582 -6.5080 3.3388 38 1 2.4852 -7.2419 2.0970 39 1 2.7773 -6.9097 -0.1656 40 1 3.8253 -5.6500 -0.8625 41 1 6.9208 -1.8709 0.6027 42 1 3.3226 -3.5609 3.3371 43 1 2.5176 -3.1291 1.8030 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047064094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:24 Heat of formation + Delta-G solvation = 66.170899 kcal Electronic energy + Delta-G solvation = -27544.666955 eV Core-core repulsion = 24104.799007 eV Total energy + Delta-G solvation = -3439.867948 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57259 -40.01739 -37.73657 -35.58812 -34.97996 -32.97153 -32.70427 -32.35370 -29.91829 -27.80185 -26.87117 -24.91627 -24.65498 -23.00040 -22.32873 -21.70009 -20.29386 -20.10543 -19.44440 -18.17209 -17.80064 -17.24136 -16.81989 -16.24155 -15.93937 -15.47486 -15.26093 -15.10651 -14.62493 -14.28942 -14.18568 -14.14169 -13.99284 -13.64471 -13.52523 -13.44863 -13.23379 -13.05767 -12.95516 -12.69655 -12.51240 -12.46733 -12.32749 -12.06300 -11.90369 -11.45853 -11.27047 -11.04686 -10.88020 -10.50680 -10.44547 -9.66875 -9.44127 -9.14477 -8.97571 -8.47918 -5.44736 -0.11750 0.65629 0.98783 1.16580 1.40144 1.40414 1.60451 2.43148 2.47462 2.67003 3.16297 3.29053 3.69557 3.82844 3.83582 3.88584 4.08121 4.21641 4.26323 4.31479 4.35109 4.45436 4.52788 4.67045 4.69745 4.74438 4.84301 4.88008 4.91597 4.98645 5.01446 5.05649 5.14478 5.16534 5.30734 5.36212 5.42541 5.43258 5.46598 5.49764 5.67865 5.87146 6.16333 6.84141 6.95927 7.45295 7.48870 8.16276 8.93192 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.007896 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.220161 B = 3545.040075 C = 4667.974433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.159 4.159 3 S 0.210 5.790 4 C -0.237 4.237 5 C -0.109 4.109 6 C -0.205 4.205 7 C 0.559 3.441 8 O -0.578 6.578 9 N -0.703 5.703 10 C 0.150 3.850 11 H 0.067 0.933 12 C -0.117 4.117 13 C -0.101 4.101 14 H 0.098 0.902 15 C -0.114 4.114 16 C 0.139 3.861 17 H 0.072 0.928 18 C -0.129 4.129 19 N -0.617 5.617 20 C -0.326 4.326 21 H 0.064 0.936 22 C -0.027 4.027 23 N -0.931 5.931 24 Si 1.087 2.913 25 H -0.316 1.316 26 H -0.279 1.279 27 H -0.302 1.302 28 C 0.084 3.916 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.430 0.570 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.050 0.950 41 H 0.256 0.744 42 H -0.009 1.009 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 -2.932 -2.256 10.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.280 4.280 3 S 0.475 5.525 4 C -0.372 4.372 5 C -0.137 4.137 6 C -0.222 4.222 7 C 0.347 3.653 8 O -0.462 6.462 9 N -0.367 5.367 10 C 0.045 3.955 11 H 0.085 0.915 12 C -0.155 4.155 13 C -0.120 4.120 14 H 0.116 0.884 15 C -0.152 4.152 16 C 0.033 3.967 17 H 0.090 0.910 18 C -0.168 4.168 19 N -0.345 5.345 20 C -0.454 4.454 21 H 0.082 0.918 22 C -0.226 4.226 23 N -0.573 5.573 24 Si 0.922 3.078 25 H -0.246 1.246 26 H -0.206 1.206 27 H -0.231 1.231 28 C -0.040 4.040 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.185 0.815 33 H 0.169 0.831 34 H 0.283 0.717 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.008 0.992 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.151 -0.274 -1.296 11.230 hybrid contribution 1.915 -2.476 -0.747 3.218 sum -9.236 -2.750 -2.043 9.851 Atomic orbital electron populations 1.20612 0.85622 1.04701 1.03574 1.24854 1.02681 0.97277 1.03170 1.82229 0.93672 1.06064 1.70540 1.25507 1.02690 0.97196 1.11766 1.21832 0.94759 0.98086 0.99059 1.20438 0.93378 0.94460 1.13911 1.17833 0.86093 0.84935 0.76487 1.90561 1.15176 1.86790 1.53677 1.47694 1.14576 1.05223 1.69215 1.20926 0.95082 0.81420 0.98024 0.91453 1.22047 0.97115 1.03108 0.93205 1.22599 0.95853 0.94645 0.98878 0.88363 1.23037 0.96569 0.97310 0.98322 1.21869 0.96582 0.84444 0.93785 0.90990 1.22312 0.96282 0.99511 0.98743 1.45319 1.16814 1.07572 1.64753 1.20066 1.03044 1.02507 1.19827 0.91795 1.25984 1.00586 0.93399 1.02628 1.70998 1.25561 1.34631 1.26156 0.83504 0.75350 0.73374 0.75585 1.24585 1.20580 1.23092 1.22878 0.88993 0.99258 0.92916 0.90331 0.89025 0.89302 0.81492 0.83105 0.71723 0.87982 0.92486 0.92074 0.87323 0.87148 0.93147 0.93397 0.99166 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.58 9.67 71.24 0.69 -1.89 16 2 C -0.16 -5.68 6.34 25.17 0.16 -5.53 16 3 S 0.21 6.48 22.97 -56.49 -1.30 5.18 16 4 C -0.24 -9.23 11.12 66.64 0.74 -8.49 16 5 C -0.11 -4.81 8.63 22.67 0.20 -4.61 16 6 C -0.20 -8.61 5.96 -19.87 -0.12 -8.73 16 7 C 0.56 23.94 5.90 86.59 0.51 24.45 16 8 O -0.58 -24.77 12.54 -4.17 -0.05 -24.82 16 9 N -0.70 -28.77 2.76 -445.99 -1.23 -30.01 16 10 C 0.15 5.01 2.76 45.00 0.12 5.13 16 11 H 0.07 2.20 8.11 -2.38 -0.02 2.18 16 12 C -0.12 -3.53 5.13 30.93 0.16 -3.37 16 13 C -0.10 -3.27 4.33 -9.05 -0.04 -3.31 16 14 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 15 C -0.11 -3.20 6.20 32.27 0.20 -3.00 16 16 C 0.14 4.71 4.26 45.68 0.19 4.91 16 17 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 18 C -0.13 -3.80 5.40 30.68 0.17 -3.64 16 19 N -0.62 -26.73 1.66 -665.06 -1.11 -27.84 16 20 C -0.33 -16.47 8.16 84.03 0.69 -15.79 16 21 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 22 C -0.03 -1.41 3.36 84.86 0.29 -1.13 16 23 N -0.93 -51.54 12.76 21.65 0.28 -51.26 16 24 Si 1.09 54.73 24.19 68.60 1.66 56.39 16 25 H -0.32 -16.51 7.11 99.48 0.71 -15.80 16 26 H -0.28 -13.74 5.55 99.48 0.55 -13.19 16 27 H -0.30 -15.06 6.99 99.48 0.70 -14.36 16 28 C 0.08 3.57 3.18 86.85 0.28 3.85 16 29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 2.98 5.83 -2.39 -0.01 2.96 16 32 H 0.17 6.36 8.06 -2.91 -0.02 6.33 16 33 H 0.15 7.49 3.87 -2.91 -0.01 7.48 16 34 H 0.43 19.10 2.74 -92.71 -0.25 18.85 16 35 H 0.10 2.32 7.97 -2.39 -0.02 2.30 16 36 H 0.06 1.99 6.54 -2.39 -0.02 1.97 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 2.20 7.75 -2.39 -0.02 2.18 16 39 H 0.11 2.36 8.00 -2.39 -0.02 2.34 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.26 14.20 8.73 -92.70 -0.81 13.39 16 42 H -0.01 -0.41 3.50 -2.38 -0.01 -0.42 16 43 H 0.07 3.01 3.02 -15.65 -0.05 2.96 16 Total: -1.00 -61.00 317.97 3.03 -57.97 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.55 Total: 35.52 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 4.23 Total: -21.14 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -2.06 Total: -109.10 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 54.73 SS G_CDS: 1.66 Total: 56.39 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.30 Total: 5.18 kcal Total: -61.00 3.03 -57.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047064094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.144 kcal (2) G-P(sol) polarization free energy of solvation -61.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds