Wall clock time and date at job start Tue Mar 31 2020 12:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33819 * 124.51879 * 2 1 4 4 C 1.37474 * 115.09805 * 179.97438 * 3 2 1 5 5 C 1.50708 * 123.34989 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.30082 * 0.22526 * 4 3 2 7 7 C 1.46578 * 125.45978 * 179.74556 * 6 4 3 8 8 O 1.21703 * 120.00341 * 354.42008 * 7 6 4 9 9 N 1.34780 * 119.99922 * 174.42339 * 7 6 4 10 10 C 1.46662 * 125.33739 * 4.82877 * 9 7 6 11 11 C 1.53728 * 107.94070 * 180.54613 * 10 9 7 12 12 H 1.09007 * 112.56309 * 139.72013 * 11 10 9 13 13 C 1.53689 * 109.34146 * 266.24678 * 11 10 9 14 14 N 1.46647 * 108.00704 * 127.55825 * 13 11 10 15 15 C 1.36933 * 125.32828 * 180.82145 * 14 13 11 16 16 H 1.07999 * 119.99810 * 185.07307 * 15 14 13 17 17 C 1.38812 * 120.00257 * 5.07290 * 15 14 13 18 18 N 1.31622 * 119.99719 * 354.51571 * 17 15 14 19 19 Si 1.86799 * 120.00343 * 174.52349 * 17 15 14 20 20 H 1.48503 * 109.47433 * 94.99327 * 19 17 15 21 21 H 1.48501 * 109.47383 * 214.99575 * 19 17 15 22 22 H 1.48504 * 109.47003 * 334.99404 * 19 17 15 23 23 C 1.46737 * 109.33928 * 0.83908 * 14 13 11 24 24 C 1.53930 * 106.72269 * 341.65975 * 23 14 13 25 25 H 1.09006 * 113.01061 * 150.83555 * 24 23 14 26 26 C 1.46775 * 125.33828 * 184.52479 * 9 7 6 27 27 S 1.70619 * 124.52653 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46917 * 90.01211 * 1 2 3 29 29 H 1.09005 * 109.47250 * 210.00284 * 1 2 3 30 30 H 1.08993 * 109.48005 * 330.00970 * 1 2 3 31 31 H 1.08000 * 122.44855 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47178 * 90.02017 * 5 4 3 33 33 H 1.09010 * 109.46707 * 330.02214 * 5 4 3 34 34 H 1.08994 * 109.46802 * 210.02360 * 5 4 3 35 35 H 1.09005 * 109.77562 * 300.16082 * 10 9 7 36 36 H 1.09001 * 109.77442 * 60.92668 * 10 9 7 37 37 H 1.08999 * 109.76938 * 247.19687 * 13 11 10 38 38 H 1.08998 * 109.76119 * 7.92356 * 13 11 10 39 39 H 0.97004 * 120.00057 * 180.02562 * 18 17 15 40 40 H 1.09009 * 110.01236 * 222.34144 * 23 14 13 41 41 H 1.09004 * 110.01176 * 100.97492 * 23 14 13 42 42 H 1.09000 * 110.02742 * 280.77687 * 26 9 7 43 43 H 1.09003 * 110.02987 * 42.18379 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 4.6449 1.9839 0.0001 6 6 3.9493 -0.4490 -0.0039 7 6 5.3123 -0.9880 -0.0098 8 8 6.2637 -0.2362 -0.1135 9 7 5.5120 -2.3165 0.0996 10 6 4.4558 -3.3335 0.1295 11 6 5.1266 -4.7087 0.2774 12 1 4.5861 -5.3668 0.9580 13 6 5.3371 -5.3247 -1.1148 14 7 6.7462 -5.7142 -1.2299 15 6 7.3226 -6.2844 -2.3334 16 1 8.3508 -6.6127 -2.2968 17 6 6.5853 -6.4404 -3.4992 18 7 5.3037 -6.1407 -3.5123 19 14 7.4119 -7.0758 -5.0492 20 1 7.2152 -8.5443 -5.1487 21 1 6.8129 -6.4146 -6.2363 22 1 8.8648 -6.7736 -4.9948 23 6 7.4417 -5.3977 0.0228 24 6 6.5626 -4.3808 0.7728 25 1 6.6689 -4.4426 1.8559 26 6 6.8210 -2.9726 0.2010 27 16 2.4740 -1.4057 0.0006 28 1 -0.3633 -0.0002 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3635 0.8900 0.5136 31 1 1.8427 2.0965 -0.0004 32 1 4.8916 2.2511 1.0276 33 1 4.2382 2.8548 -0.5142 34 1 5.5448 1.6460 -0.5136 35 1 3.7940 -3.1531 0.9768 36 1 3.8848 -3.2996 -0.7984 37 1 4.7016 -6.2028 -1.2294 38 1 5.0938 -4.5909 -1.8831 39 1 4.7884 -6.2500 -4.3269 40 1 8.4170 -4.9607 -0.1921 41 1 7.5611 -6.3006 0.6217 42 1 7.2795 -3.0454 -0.7851 43 1 7.4691 -2.4108 0.8737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048842864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:25 Heat of formation + Delta-G solvation = 24.334159 kcal Electronic energy + Delta-G solvation = -25154.299357 eV Core-core repulsion = 21712.617232 eV Total energy + Delta-G solvation = -3441.682125 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22702 -38.84416 -37.52311 -34.97486 -32.77642 -32.32863 -30.24103 -29.85014 -28.38883 -27.48541 -25.62775 -25.24064 -23.12451 -22.03093 -20.66537 -20.15958 -19.49297 -17.96563 -17.78056 -16.84544 -16.19674 -15.64193 -15.31577 -14.91467 -14.47196 -14.29715 -14.04401 -13.75596 -13.30200 -13.23840 -13.08428 -13.03369 -12.75224 -12.65175 -12.23123 -12.04310 -11.86825 -11.72236 -11.61147 -11.45651 -11.41239 -10.96027 -10.82724 -10.80599 -10.28656 -10.13689 -10.10092 -9.88339 -9.68765 -9.61675 -8.68425 -8.60052 -8.54115 -8.14744 -6.85824 -5.76126 -3.08579 0.54945 1.51889 1.94285 2.36422 3.19432 3.34909 3.38929 3.45151 3.46808 4.48040 4.58526 4.63038 4.81281 5.01218 5.08435 5.19158 5.23764 5.28998 5.34293 5.40592 5.48502 5.53493 5.64796 5.66917 5.70987 5.73943 5.74377 5.97779 6.00051 6.02629 6.16383 6.18754 6.34917 6.35611 6.49464 6.52944 6.57398 6.64908 6.79864 7.48334 7.54992 7.72499 7.77301 8.23387 8.32523 9.19195 9.79829 10.43339 11.35969 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.003806 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.789351 B = 7354.347329 C = 7800.128348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.217 4.217 3 C -0.157 4.157 4 C -0.023 4.023 5 C -0.106 4.106 6 C -0.270 4.270 7 C 0.603 3.397 8 O -0.536 6.536 9 N -0.604 5.604 10 C 0.100 3.900 11 C -0.117 4.117 12 H 0.094 0.906 13 C 0.184 3.816 14 N -0.602 5.602 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.921 5.921 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.145 3.855 24 C -0.111 4.111 25 H 0.091 0.909 26 C 0.124 3.876 27 S 0.224 5.776 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.054 0.946 39 H 0.252 0.748 40 H 0.040 0.960 41 H 0.021 0.979 42 H 0.080 0.920 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.022 11.348 10.739 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.336 4.336 3 C -0.187 4.187 4 C -0.038 4.038 5 C -0.164 4.164 6 C -0.390 4.390 7 C 0.392 3.608 8 O -0.416 6.416 9 N -0.336 5.336 10 C -0.025 4.025 11 C -0.137 4.137 12 H 0.112 0.888 13 C 0.059 3.941 14 N -0.329 5.329 15 C -0.358 4.358 16 H 0.097 0.903 17 C -0.201 4.201 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.018 3.982 24 C -0.131 4.131 25 H 0.109 0.891 26 C 0.002 3.998 27 S 0.494 5.506 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.098 0.902 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.939 10.193 10.445 17.114 hybrid contribution 0.383 1.176 -0.904 1.532 sum -8.556 11.369 9.540 17.131 Atomic orbital electron populations 1.20357 0.87734 1.03145 1.02947 1.24570 1.01776 0.99710 1.07557 1.19762 0.92100 0.99384 1.07492 1.19399 0.94689 0.93300 0.96389 1.20739 0.98304 0.94643 1.02730 1.24312 0.96868 0.97410 1.20460 1.16493 0.86830 0.80606 0.76846 1.90740 1.42273 1.57082 1.51506 1.48080 1.09053 1.04760 1.71687 1.22074 0.90212 0.88579 1.01589 1.23102 0.94944 0.94161 1.01507 0.88815 1.21134 0.86167 0.98122 0.88682 1.44192 1.05204 1.72315 1.11148 1.19040 0.96091 1.32512 0.88174 0.90326 1.24801 0.95960 1.01469 0.97898 1.69949 1.05689 1.54166 1.27010 0.86125 0.78569 0.78151 0.83087 1.21649 1.21650 1.20588 1.21178 0.94630 0.94149 0.88201 1.22982 0.96483 0.94437 0.99219 0.89095 1.22006 0.84196 0.91682 1.01937 1.83582 0.93486 1.05710 1.67840 0.90509 0.91162 0.90694 0.84452 0.91056 0.91908 0.88626 0.91711 0.90283 0.93860 0.92792 0.93722 0.94202 0.96129 0.90172 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.31 36.00 0.37 -0.29 16 2 C -0.22 -2.43 6.28 -35.86 -0.23 -2.66 16 3 C -0.16 -1.84 9.82 -41.41 -0.41 -2.24 16 4 C -0.02 -0.31 5.90 -105.47 -0.62 -0.94 16 5 C -0.11 -1.34 9.63 36.01 0.35 -1.00 16 6 C -0.27 -4.20 6.38 -36.80 -0.23 -4.43 16 7 C 0.60 10.91 7.78 -12.90 -0.10 10.81 16 8 O -0.54 -10.81 14.53 5.19 0.08 -10.73 16 9 N -0.60 -10.58 3.31 -173.74 -0.58 -11.16 16 10 C 0.10 1.59 4.58 -3.58 -0.02 1.57 16 11 C -0.12 -2.01 4.02 -88.61 -0.36 -2.37 16 12 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 13 C 0.18 4.21 4.76 -3.60 -0.02 4.19 16 14 N -0.60 -14.79 3.37 -171.93 -0.58 -15.37 16 15 C -0.23 -6.28 10.24 -15.06 -0.15 -6.43 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 18 N -0.92 -26.43 10.28 55.49 0.57 -25.86 16 19 Si 0.91 21.96 29.56 -169.99 -5.02 16.93 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.15 2.85 6.37 -3.43 -0.02 2.83 16 24 C -0.11 -1.84 4.19 -88.25 -0.37 -2.21 16 25 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 26 C 0.12 2.19 6.08 -3.29 -0.02 2.17 16 27 S 0.22 2.84 18.35 -107.50 -1.97 0.87 16 28 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.10 1.45 5.88 -51.93 -0.31 1.15 16 35 H 0.06 0.87 6.67 -51.88 -0.35 0.53 16 36 H 0.08 1.34 6.37 -51.93 -0.33 1.01 16 37 H 0.04 1.10 7.59 -51.93 -0.39 0.70 16 38 H 0.05 1.40 6.38 -51.93 -0.33 1.07 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.04 0.78 7.95 -51.92 -0.41 0.36 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 1.66 7.72 -51.93 -0.40 1.26 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -31.52 348.58 -10.47 -41.99 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.29 Total: -0.71 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.92 Total: -1.22 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.58 Total: -52.39 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.97 Total: 0.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.52 -10.47 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048842864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.326 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds