Wall clock time and date at job start Tue Mar 31 2020 12:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33819 * 124.51879 * 2 1 4 4 C 1.37474 * 115.09805 * 179.97438 * 3 2 1 5 5 C 1.50708 * 123.34989 * 179.97438 * 4 3 2 6 6 C 1.36644 * 113.30082 * 0.22526 * 4 3 2 7 7 C 1.46578 * 125.45978 * 179.74556 * 6 4 3 8 8 O 1.21703 * 120.00341 * 354.42008 * 7 6 4 9 9 N 1.34780 * 119.99922 * 174.42339 * 7 6 4 10 10 C 1.46662 * 125.33739 * 4.82877 * 9 7 6 11 11 C 1.53728 * 107.94070 * 180.54613 * 10 9 7 12 12 H 1.09007 * 112.56309 * 139.72013 * 11 10 9 13 13 C 1.53689 * 109.34146 * 266.24678 * 11 10 9 14 14 N 1.46647 * 108.00704 * 127.55825 * 13 11 10 15 15 C 1.36933 * 125.32828 * 180.82145 * 14 13 11 16 16 H 1.07999 * 119.99810 * 185.07307 * 15 14 13 17 17 C 1.38812 * 120.00257 * 5.07290 * 15 14 13 18 18 N 1.31622 * 119.99719 * 354.51571 * 17 15 14 19 19 Si 1.86799 * 120.00343 * 174.52349 * 17 15 14 20 20 H 1.48503 * 109.47433 * 94.99327 * 19 17 15 21 21 H 1.48501 * 109.47383 * 214.99575 * 19 17 15 22 22 H 1.48504 * 109.47003 * 334.99404 * 19 17 15 23 23 C 1.46737 * 109.33928 * 0.83908 * 14 13 11 24 24 C 1.53930 * 106.72269 * 341.65975 * 23 14 13 25 25 H 1.09006 * 113.01061 * 150.83555 * 24 23 14 26 26 C 1.46775 * 125.33828 * 184.52479 * 9 7 6 27 27 S 1.70619 * 124.52653 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.46917 * 90.01211 * 1 2 3 29 29 H 1.09005 * 109.47250 * 210.00284 * 1 2 3 30 30 H 1.08993 * 109.48005 * 330.00970 * 1 2 3 31 31 H 1.08000 * 122.44855 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47178 * 90.02017 * 5 4 3 33 33 H 1.09010 * 109.46707 * 330.02214 * 5 4 3 34 34 H 1.08994 * 109.46802 * 210.02360 * 5 4 3 35 35 H 1.09005 * 109.77562 * 300.16082 * 10 9 7 36 36 H 1.09001 * 109.77442 * 60.92668 * 10 9 7 37 37 H 1.08999 * 109.76938 * 247.19687 * 13 11 10 38 38 H 1.08998 * 109.76119 * 7.92356 * 13 11 10 39 39 H 0.97004 * 120.00057 * 180.02562 * 18 17 15 40 40 H 1.09009 * 110.01236 * 222.34144 * 23 14 13 41 41 H 1.09004 * 110.01176 * 100.97492 * 23 14 13 42 42 H 1.09000 * 110.02742 * 280.77687 * 26 9 7 43 43 H 1.09003 * 110.02987 * 42.18379 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 4.6449 1.9839 0.0001 6 6 3.9493 -0.4490 -0.0039 7 6 5.3123 -0.9880 -0.0098 8 8 6.2637 -0.2362 -0.1135 9 7 5.5120 -2.3165 0.0996 10 6 4.4558 -3.3335 0.1295 11 6 5.1266 -4.7087 0.2774 12 1 4.5861 -5.3668 0.9580 13 6 5.3371 -5.3247 -1.1148 14 7 6.7462 -5.7142 -1.2299 15 6 7.3226 -6.2844 -2.3334 16 1 8.3508 -6.6127 -2.2968 17 6 6.5853 -6.4404 -3.4992 18 7 5.3037 -6.1407 -3.5123 19 14 7.4119 -7.0758 -5.0492 20 1 7.2152 -8.5443 -5.1487 21 1 6.8129 -6.4146 -6.2363 22 1 8.8648 -6.7736 -4.9948 23 6 7.4417 -5.3977 0.0228 24 6 6.5626 -4.3808 0.7728 25 1 6.6689 -4.4426 1.8559 26 6 6.8210 -2.9726 0.2010 27 16 2.4740 -1.4057 0.0006 28 1 -0.3633 -0.0002 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3635 0.8900 0.5136 31 1 1.8427 2.0965 -0.0004 32 1 4.8916 2.2511 1.0276 33 1 4.2382 2.8548 -0.5142 34 1 5.5448 1.6460 -0.5136 35 1 3.7940 -3.1531 0.9768 36 1 3.8848 -3.2996 -0.7984 37 1 4.7016 -6.2028 -1.2294 38 1 5.0938 -4.5909 -1.8831 39 1 4.7884 -6.2500 -4.3269 40 1 8.4170 -4.9607 -0.1921 41 1 7.5611 -6.3006 0.6217 42 1 7.2795 -3.0454 -0.7851 43 1 7.4691 -2.4108 0.8737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048842864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:24 Heat of formation + Delta-G solvation = 5.992952 kcal Electronic energy + Delta-G solvation = -25155.094692 eV Core-core repulsion = 21712.617232 eV Total energy + Delta-G solvation = -3442.477459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.62369 -40.09698 -38.74432 -36.62786 -34.23648 -33.59815 -31.80018 -31.48582 -29.45811 -28.54981 -27.33948 -26.80321 -24.67462 -22.93094 -21.96639 -21.82034 -20.96404 -19.27975 -18.88970 -18.72536 -17.54199 -16.87047 -16.72100 -16.44908 -16.07265 -15.58365 -15.25731 -15.10873 -14.68771 -14.40007 -14.34356 -14.09522 -13.93340 -13.75924 -13.61635 -13.60010 -13.25014 -13.12349 -12.82614 -12.77936 -12.66573 -12.58379 -12.50086 -12.11380 -12.00367 -11.89625 -11.56423 -11.47335 -11.35363 -10.99705 -10.66421 -9.91646 -9.57069 -9.26442 -8.86263 -7.86859 -5.19945 -0.49053 0.51322 0.97059 1.34716 1.44269 1.46074 1.54647 1.88472 2.09163 2.48673 3.26337 3.30810 3.45804 3.73228 3.80452 3.83743 3.90161 4.17200 4.22308 4.24049 4.26931 4.40053 4.54522 4.55467 4.64385 4.72319 4.73848 4.75503 4.77561 4.86475 4.97953 5.01403 5.04552 5.09379 5.14781 5.23702 5.35274 5.42106 5.48454 5.53110 5.64007 5.77311 6.22071 6.37774 6.97146 7.12099 7.80320 8.41402 9.23633 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.003806 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.789351 B = 7354.347329 C = 7800.128348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.198 4.198 3 C -0.167 4.167 4 C -0.020 4.020 5 C -0.104 4.104 6 C -0.315 4.315 7 C 0.596 3.404 8 O -0.570 6.570 9 N -0.609 5.609 10 C 0.106 3.894 11 C -0.106 4.106 12 H 0.129 0.871 13 C 0.195 3.805 14 N -0.625 5.625 15 C -0.242 4.242 16 H 0.081 0.919 17 C -0.061 4.061 18 N -0.947 5.947 19 Si 0.972 3.028 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.271 1.271 23 C 0.139 3.861 24 C -0.091 4.091 25 H 0.138 0.862 26 C 0.125 3.875 27 S 0.226 5.774 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.167 0.833 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.010 0.990 38 H 0.012 0.988 39 H 0.246 0.754 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 12.150 12.632 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.318 4.318 3 C -0.197 4.197 4 C -0.036 4.036 5 C -0.163 4.163 6 C -0.435 4.435 7 C 0.387 3.613 8 O -0.453 6.453 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.126 4.126 12 H 0.147 0.853 13 C 0.070 3.930 14 N -0.351 5.351 15 C -0.371 4.371 16 H 0.099 0.901 17 C -0.254 4.254 18 N -0.596 5.596 19 Si 0.800 3.200 20 H -0.211 1.211 21 H -0.224 1.224 22 H -0.196 1.196 23 C 0.013 3.987 24 C -0.111 4.111 25 H 0.155 0.845 26 C 0.003 3.997 27 S 0.496 5.504 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.184 0.816 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.522 10.979 12.370 19.603 hybrid contribution 0.846 0.982 -1.507 1.988 sum -9.676 11.961 10.863 18.834 Atomic orbital electron populations 1.20542 0.85039 1.04802 1.04067 1.25030 1.03402 0.98541 1.04834 1.19992 0.90979 1.00954 1.07733 1.19759 0.96073 0.92930 0.94807 1.20726 0.97074 0.95269 1.03203 1.24205 0.96546 0.98670 1.24051 1.16954 0.87807 0.80461 0.76054 1.90709 1.43681 1.57773 1.53114 1.48173 1.09174 1.05055 1.71667 1.22053 0.89997 0.87397 1.02297 1.23028 0.96196 0.94954 0.98417 0.85317 1.20834 0.85011 0.95839 0.91294 1.44499 1.06407 1.72049 1.12156 1.19412 0.96333 1.31930 0.89437 0.90087 1.25575 0.96605 1.02580 1.00685 1.70165 1.06783 1.55550 1.27074 0.85164 0.77961 0.77559 0.79297 1.21078 1.22370 1.19605 1.21383 0.94868 0.95591 0.86837 1.22996 0.94776 0.92158 1.01160 0.84466 1.21894 0.84747 0.93038 1.00050 1.83431 0.92513 1.06422 1.67989 0.89482 0.90055 0.88522 0.81607 0.90149 0.89304 0.91634 0.88351 0.91816 0.97139 0.96997 0.94466 0.94373 0.94494 0.94377 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 10.31 71.23 0.73 -0.30 16 2 C -0.20 -3.88 6.28 24.68 0.15 -3.72 16 3 C -0.17 -3.45 9.82 21.08 0.21 -3.25 16 4 C -0.02 -0.52 5.90 -20.42 -0.12 -0.64 16 5 C -0.10 -2.58 9.63 71.24 0.69 -1.90 16 6 C -0.32 -9.71 6.38 24.07 0.15 -9.55 16 7 C 0.60 22.06 7.78 86.42 0.67 22.73 16 8 O -0.57 -23.95 14.53 -4.36 -0.06 -24.01 16 9 N -0.61 -21.51 3.31 -821.82 -2.72 -24.23 16 10 C 0.11 3.31 4.58 86.59 0.40 3.71 16 11 C -0.11 -3.52 4.02 -9.49 -0.04 -3.56 16 12 H 0.13 3.44 8.14 -2.38 -0.02 3.42 16 13 C 0.20 9.23 4.76 86.58 0.41 9.64 16 14 N -0.62 -31.39 3.37 -697.87 -2.35 -33.74 16 15 C -0.24 -13.55 10.24 84.03 0.86 -12.69 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 17 C -0.06 -3.49 5.48 84.86 0.47 -3.02 16 18 N -0.95 -56.66 10.28 21.65 0.22 -56.44 16 19 Si 0.97 46.26 29.56 68.60 2.03 48.28 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.14 5.36 6.37 86.65 0.55 5.91 16 24 C -0.09 -2.85 4.19 -9.26 -0.04 -2.89 16 25 H 0.14 3.15 8.14 -2.38 -0.02 3.13 16 26 C 0.13 4.46 6.08 86.72 0.53 4.99 16 27 S 0.23 5.44 18.35 -56.49 -1.04 4.40 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.06 2.05 5.88 -2.39 -0.01 2.04 16 35 H 0.10 2.43 6.67 -2.41 -0.02 2.41 16 36 H 0.06 2.21 6.37 -2.39 -0.02 2.19 16 37 H 0.01 0.55 7.59 -2.39 -0.02 0.53 16 38 H 0.01 0.65 6.38 -2.39 -0.02 0.64 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.04 1.48 7.95 -2.38 -0.02 1.46 16 41 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.04 1.66 7.72 -2.39 -0.02 1.64 16 43 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -72.98 348.58 2.72 -70.26 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.01 Total: 10.02 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.63 Total: 5.46 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -4.85 Total: -114.42 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.04 Total: 4.40 kcal Total: -72.98 2.72 -70.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048842864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.258 kcal (2) G-P(sol) polarization free energy of solvation -72.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds