Wall clock time and date at job start Tue Mar 31 2020 12:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47589 * 2 1 4 4 C 1.33814 * 124.52594 * 89.99824 * 3 2 1 5 5 C 1.37471 * 115.10092 * 179.71162 * 4 3 2 6 6 C 1.36644 * 113.29828 * 0.49048 * 5 4 3 7 7 C 1.46584 * 125.45931 * 179.79801 * 6 5 4 8 8 O 1.21710 * 119.99872 * 359.72780 * 7 6 5 9 9 N 1.34772 * 120.00009 * 179.72190 * 7 6 5 10 10 C 1.46740 * 125.32994 * 359.69291 * 9 7 6 11 11 C 1.53938 * 106.71998 * 161.92529 * 10 9 7 12 12 H 1.09003 * 113.60206 * 151.17148 * 11 10 9 13 13 C 1.53963 * 109.25161 * 278.36703 * 11 10 9 14 14 N 1.46781 * 106.62678 * 138.18614 * 13 11 10 15 15 C 1.36936 * 125.33768 * 161.51730 * 14 13 11 16 16 H 1.07999 * 120.00027 * 0.02562 * 15 14 13 17 17 C 1.38806 * 119.99825 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00221 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47047 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47234 * 119.99280 * 19 17 15 22 22 H 1.48500 * 109.47516 * 239.99593 * 19 17 15 23 23 C 1.46673 * 109.32130 * 341.48598 * 14 13 11 24 24 C 1.53723 * 107.94230 * 0.54249 * 23 14 13 25 25 H 1.09001 * 113.05987 * 140.00623 * 24 23 14 26 26 C 1.46646 * 125.32835 * 180.02562 * 9 7 6 27 27 S 1.70616 * 124.52056 * 269.97958 * 3 2 1 28 28 H 1.09003 * 109.46896 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46930 * 299.99908 * 1 2 3 30 30 H 1.08998 * 109.47312 * 59.99693 * 1 2 3 31 31 H 1.09004 * 109.47367 * 239.99934 * 2 1 3 32 32 H 1.08998 * 109.47312 * 120.00307 * 2 1 3 33 33 H 1.08001 * 122.44466 * 0.02562 * 4 3 2 34 34 H 1.08001 * 123.34782 * 180.29839 * 5 4 3 35 35 H 1.08998 * 110.01575 * 281.24229 * 10 9 7 36 36 H 1.09001 * 110.00730 * 42.61188 * 10 9 7 37 37 H 1.08996 * 110.02700 * 257.47861 * 13 11 10 38 38 H 1.09001 * 110.02843 * 18.89849 * 13 11 10 39 39 H 0.96998 * 119.99718 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.76842 * 240.92337 * 23 14 13 41 41 H 1.08992 * 109.77060 * 120.16337 * 23 14 13 42 42 H 1.08998 * 109.75889 * 300.21205 * 26 9 7 43 43 H 1.09004 * 109.76197 * 60.92765 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2853 2.1358 1.1025 5 6 2.7433 3.4122 0.8773 6 6 2.8473 3.7230 -0.4492 7 6 3.3021 5.0080 -0.9885 8 8 3.6206 5.9068 -0.2322 9 7 3.3677 5.1940 -2.3217 10 6 3.0198 4.1926 -3.3363 11 6 2.8019 4.9558 -4.6553 12 1 3.0272 4.3654 -5.5435 13 6 1.3807 5.5478 -4.6705 14 7 1.4962 6.9032 -5.2219 15 6 0.4630 7.6391 -5.7377 16 1 -0.5351 7.2272 -5.7598 17 6 0.6985 8.9146 -6.2321 18 7 1.9148 9.4169 -6.2047 19 14 -0.7110 9.9188 -6.9351 20 1 -1.9687 9.1337 -6.8502 21 1 -0.8586 11.1761 -6.1586 22 1 -0.4264 10.2448 -8.3556 23 6 2.8917 7.3460 -5.1331 24 6 3.7106 6.2074 -4.5037 25 1 4.6881 6.0772 -4.9683 26 6 3.8045 6.4265 -2.9854 27 16 2.3553 2.3321 -1.4057 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.1448 1.7373 2.0964 34 1 2.9930 4.1019 1.6701 35 1 3.8345 3.4775 -3.4494 36 1 2.1048 3.6740 -3.0500 37 1 0.7308 4.9421 -5.3019 38 1 0.9831 5.5901 -3.6565 39 1 2.0792 10.3083 -6.5499 40 1 2.9569 8.2364 -4.5077 41 1 3.2726 7.5667 -6.1301 42 1 3.1569 7.2526 -2.6917 43 1 4.8348 6.6493 -2.7080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048925332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:02 Heat of formation + Delta-G solvation = 24.505911 kcal Electronic energy + Delta-G solvation = -24802.347853 eV Core-core repulsion = 21360.673176 eV Total energy + Delta-G solvation = -3441.674677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28395 -38.67092 -37.61234 -35.02860 -33.95361 -32.28747 -30.55835 -29.74627 -28.78982 -26.09468 -25.59782 -24.83298 -23.05779 -22.46334 -20.87285 -20.26423 -19.47290 -18.40700 -18.00512 -16.79190 -16.19243 -15.81263 -15.77446 -14.84559 -14.75493 -14.51074 -14.25823 -13.83165 -13.72340 -13.41335 -13.19804 -12.89555 -12.76564 -12.43037 -12.14497 -12.11241 -11.93520 -11.77373 -11.74612 -11.54064 -11.38051 -10.92497 -10.88270 -10.77797 -10.30145 -10.11991 -10.05323 -9.93001 -9.84520 -9.69514 -8.84723 -8.68545 -8.62494 -8.34886 -6.85827 -5.74403 -3.07967 0.45014 1.38735 1.82695 2.32094 3.08747 3.29750 3.39162 3.44815 3.47207 4.41811 4.46277 4.53778 4.67876 4.72251 4.95324 4.99975 5.12351 5.17013 5.27488 5.39607 5.42443 5.48963 5.51191 5.53068 5.62192 5.63368 5.73690 5.86614 5.87690 5.90411 6.03908 6.07907 6.22659 6.27767 6.30033 6.48484 6.57612 6.64777 6.79047 7.50371 7.54102 7.62402 7.78605 8.23108 8.23801 9.19949 9.80155 10.43595 11.37355 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.003330 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.956124 B = 8406.806118 C = 8988.910228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.217 4.217 4 C -0.155 4.155 5 C -0.056 4.056 6 C -0.260 4.260 7 C 0.600 3.400 8 O -0.534 6.534 9 N -0.604 5.604 10 C 0.101 3.899 11 C -0.105 4.105 12 H 0.103 0.897 13 C 0.143 3.857 14 N -0.602 5.602 15 C -0.229 4.229 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.187 3.813 24 C -0.122 4.122 25 H 0.091 0.909 26 C 0.120 3.880 27 S 0.222 5.778 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.017 0.983 39 H 0.252 0.748 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -19.779 9.870 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.336 4.336 4 C -0.185 4.185 5 C -0.089 4.089 6 C -0.381 4.381 7 C 0.388 3.612 8 O -0.414 6.414 9 N -0.336 5.336 10 C -0.024 4.024 11 C -0.125 4.125 12 H 0.121 0.879 13 C 0.017 3.983 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.743 3.257 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.062 3.938 24 C -0.142 4.142 25 H 0.109 0.891 26 C -0.001 4.001 27 S 0.491 5.509 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.788 -19.393 8.713 21.443 hybrid contribution -0.652 0.809 1.290 1.657 sum 2.136 -18.584 10.003 21.213 Atomic orbital electron populations 1.21805 0.94118 1.02052 1.02739 1.20117 0.96334 0.89615 1.03233 1.24732 1.06805 1.02190 0.99827 1.19882 1.05007 0.94184 0.99414 1.20693 0.96878 0.96240 0.95114 1.24550 1.16301 0.99186 0.98019 1.16556 0.78158 0.85752 0.80702 1.90825 1.50369 1.42979 1.57180 1.48088 1.65224 1.15956 1.04373 1.22107 0.99867 0.91346 0.89086 1.22914 0.98283 0.96013 0.95241 0.87866 1.21264 0.92700 0.87762 0.96579 1.44221 1.05122 1.11874 1.71608 1.19086 0.88039 0.95975 1.32624 0.90341 1.24800 0.96857 0.97361 1.01332 1.69956 1.18477 1.16892 1.51582 0.86032 0.81110 0.80127 0.78409 1.20515 1.21726 1.21728 1.21054 0.82552 0.91218 0.99014 1.23170 0.99581 0.97678 0.93755 0.89077 1.22027 0.99794 0.86412 0.91911 1.83480 1.59755 1.01638 1.06044 0.91975 0.92234 0.92222 0.90726 0.90150 0.84397 0.83173 0.91071 0.90716 0.94489 0.96527 0.93717 0.93149 0.93162 0.90314 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.90 37.16 0.37 -0.65 16 2 C -0.05 -0.39 6.36 -27.88 -0.18 -0.56 16 3 C -0.22 -2.12 5.53 -35.86 -0.20 -2.32 16 4 C -0.15 -1.60 9.99 -41.41 -0.41 -2.01 16 5 C -0.06 -0.71 10.01 -40.44 -0.40 -1.11 16 6 C -0.26 -3.71 6.38 -36.79 -0.23 -3.94 16 7 C 0.60 10.50 7.80 -12.90 -0.10 10.40 16 8 O -0.53 -11.06 17.15 5.18 0.09 -10.97 16 9 N -0.60 -10.03 3.30 -173.95 -0.57 -10.61 16 10 C 0.10 1.39 4.52 -3.42 -0.02 1.37 16 11 C -0.10 -1.65 4.17 -88.35 -0.37 -2.02 16 12 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 13 C 0.14 2.86 6.48 -3.39 -0.02 2.83 16 14 N -0.60 -14.98 3.38 -171.84 -0.58 -15.56 16 15 C -0.23 -6.31 10.25 -15.06 -0.15 -6.46 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 18 N -0.92 -26.65 10.25 55.49 0.57 -26.08 16 19 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.19 4.34 4.77 -3.57 -0.02 4.32 16 24 C -0.12 -2.14 4.01 -88.61 -0.36 -2.50 16 25 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 26 C 0.12 2.15 6.22 -3.60 -0.02 2.13 16 27 S 0.22 2.42 18.43 -107.50 -1.98 0.44 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.07 0.81 8.01 -51.93 -0.42 0.40 16 36 H 0.08 0.97 5.15 -31.85 -0.16 0.81 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.02 0.36 7.71 -51.93 -0.40 -0.04 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.05 1.32 6.73 -51.93 -0.35 0.97 16 41 H 0.05 1.29 7.37 -51.93 -0.38 0.91 16 42 H 0.08 1.65 7.29 -51.93 -0.38 1.27 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -32.24 353.07 -10.68 -42.93 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.29 Total: -1.64 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.21 Total: -0.82 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.59 Total: -52.25 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.98 Total: 0.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.24 -10.68 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048925332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.433 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds