Wall clock time and date at job start Tue Mar 31 2020 12:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37471 * 123.35553 * 2 1 4 4 C 1.33815 * 115.10242 * 180.27097 * 3 2 1 5 5 S 1.70613 * 110.95403 * 359.74961 * 4 3 2 6 6 C 1.36654 * 123.34779 * 179.80335 * 2 1 3 7 7 C 1.46579 * 125.46149 * 0.02562 * 6 2 1 8 8 O 1.21705 * 119.99688 * 320.60985 * 7 6 2 9 9 N 1.34769 * 120.00328 * 140.60204 * 7 6 2 10 10 C 1.47859 * 122.22497 * 354.59550 * 9 7 6 11 11 C 1.52429 * 110.72861 * 233.56407 * 10 9 7 12 12 C 1.53866 * 110.97759 * 310.04128 * 11 10 9 13 13 C 1.51084 * 107.40645 * 57.98067 * 12 11 10 14 14 H 1.09006 * 108.73538 * 51.42384 * 13 12 11 15 15 C 1.45723 * 122.23280 * 174.56194 * 9 7 6 16 16 H 1.09006 * 111.07137 * 240.54789 * 15 9 7 17 17 C 1.53432 * 117.00455 * 9.61857 * 15 9 7 18 18 C 1.55464 * 101.67183 * 152.98115 * 17 15 9 19 19 N 1.45026 * 119.18862 * 176.06982 * 13 12 11 20 20 C 1.36931 * 126.56172 * 331.17424 * 19 13 12 21 21 H 1.07996 * 119.99991 * 359.97438 * 20 19 13 22 22 C 1.38819 * 119.99880 * 179.97438 * 20 19 13 23 23 N 1.31615 * 120.00138 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99772 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46888 * 90.00248 * 24 22 20 26 26 H 1.48501 * 109.46917 * 209.99740 * 24 22 20 27 27 H 1.48499 * 109.47268 * 329.99981 * 24 22 20 28 28 H 1.08994 * 109.47093 * 270.20237 * 1 2 3 29 29 H 1.09001 * 109.47244 * 30.20116 * 1 2 3 30 30 H 1.09002 * 109.47288 * 150.20022 * 1 2 3 31 31 H 1.08002 * 122.44467 * 359.97438 * 3 2 1 32 32 H 1.07995 * 124.52293 * 179.76332 * 4 3 2 33 33 H 1.08993 * 109.16167 * 352.86279 * 10 9 7 34 34 H 1.09001 * 109.16123 * 112.10246 * 10 9 7 35 35 H 1.08995 * 108.52274 * 190.20433 * 11 10 9 36 36 H 1.09007 * 110.15863 * 70.93732 * 11 10 9 37 37 H 1.08994 * 109.88765 * 298.48207 * 12 11 10 38 38 H 1.09003 * 109.88239 * 177.47460 * 12 11 10 39 39 H 1.09002 * 110.98444 * 271.07856 * 17 15 9 40 40 H 1.08991 * 110.98721 * 34.87920 * 17 15 9 41 41 H 1.08997 * 109.96634 * 96.78132 * 18 17 15 42 42 H 1.09007 * 109.96262 * 217.98435 * 18 17 15 43 43 H 0.96993 * 120.00570 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.1483 0.0000 4 6 3.5872 0.9562 -0.0057 5 16 3.9623 -0.7082 -0.0046 6 6 2.2582 -1.1415 0.0039 7 6 1.7284 -2.5082 0.0081 8 8 0.7487 -2.7789 0.6775 9 7 2.3260 -3.4649 -0.7294 10 6 3.4445 -3.1676 -1.6496 11 6 3.1445 -3.6898 -3.0499 12 6 2.6877 -5.1584 -3.0039 13 6 1.4664 -5.2242 -2.1170 14 1 0.7477 -4.4774 -2.4547 15 6 1.9133 -4.8613 -0.6726 16 1 2.7319 -5.4986 -0.3378 17 6 0.6198 -5.1750 0.0906 18 6 0.1424 -6.4730 -0.6196 19 7 0.7709 -6.4876 -1.9637 20 6 0.7059 -7.4998 -2.8836 21 1 1.2054 -7.3972 -3.8356 22 6 -0.0021 -8.6578 -2.5925 23 7 -0.6105 -8.7831 -1.4322 24 14 -0.0901 -10.0389 -3.8472 25 1 1.0430 -10.9747 -3.6336 26 1 -1.3727 -10.7705 -3.6889 27 1 -0.0106 -9.4697 -5.2165 28 1 -0.3633 0.0036 1.0276 29 1 -0.3634 0.8882 -0.5170 30 1 -0.3634 -0.8918 -0.5107 31 1 1.8202 2.1334 -0.0004 32 1 4.3206 1.7489 -0.0102 33 1 3.5834 -2.0881 -1.7068 34 1 4.3557 -3.6255 -1.2648 35 1 4.0527 -3.6179 -3.6482 36 1 2.3639 -3.0884 -3.5159 37 1 3.4808 -5.7806 -2.5895 38 1 2.4354 -5.4997 -4.0080 39 1 0.8238 -5.3596 1.1454 40 1 -0.1088 -4.3734 -0.0299 41 1 0.4601 -7.3468 -0.0508 42 1 -0.9434 -6.4667 -0.7160 43 1 -1.1049 -9.5924 -1.2286 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049292202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:07 Heat of formation + Delta-G solvation = 38.019484 kcal Electronic energy + Delta-G solvation = -25692.449914 eV Core-core repulsion = 22251.361230 eV Total energy + Delta-G solvation = -3441.088685 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38779 -38.58709 -37.23402 -35.44338 -32.61850 -32.24109 -31.02122 -29.28915 -28.34225 -27.80805 -24.70715 -24.43711 -23.43782 -21.54798 -21.43041 -20.10245 -19.50895 -18.29905 -17.60439 -16.54237 -15.89897 -15.59375 -15.21094 -15.16350 -14.64110 -14.29880 -14.02499 -13.85141 -13.56956 -13.40851 -13.11288 -12.83360 -12.44596 -12.35600 -12.23400 -12.18896 -11.86243 -11.83245 -11.53914 -11.20042 -10.98059 -10.83333 -10.66621 -10.52977 -10.45483 -10.08520 -9.98679 -9.82977 -9.59022 -9.13351 -8.83875 -8.55563 -8.48700 -8.23336 -6.80195 -5.67629 -3.01811 0.48816 1.31129 1.75571 2.32428 3.03310 3.30339 3.41722 3.46590 3.48811 4.50754 4.54077 4.70689 4.84001 5.09334 5.14405 5.16315 5.28655 5.36556 5.40081 5.44461 5.61136 5.65150 5.67576 5.78369 5.79363 5.86905 5.88418 6.01518 6.09776 6.22087 6.27301 6.31155 6.32967 6.41794 6.57502 6.73688 6.80305 6.91802 7.20357 7.60188 7.64935 7.70547 7.86597 8.27424 8.36925 9.21819 9.85685 10.54146 11.44431 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.003632 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.555712 B = 7708.198319 C = 8271.637142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.037 4.037 3 C -0.142 4.142 4 C -0.246 4.246 5 S 0.203 5.797 6 C -0.259 4.259 7 C 0.590 3.410 8 O -0.515 6.515 9 N -0.594 5.594 10 C 0.101 3.899 11 C -0.127 4.127 12 C -0.116 4.116 13 C 0.159 3.841 14 H 0.018 0.982 15 C 0.117 3.883 16 H 0.081 0.919 17 C -0.133 4.133 18 C 0.173 3.827 19 N -0.593 5.593 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.569 19.711 1.685 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.174 4.174 4 C -0.384 4.384 5 S 0.472 5.528 6 C -0.379 4.379 7 C 0.377 3.623 8 O -0.393 6.393 9 N -0.326 5.326 10 C -0.023 4.023 11 C -0.165 4.165 12 C -0.155 4.155 13 C 0.050 3.950 14 H 0.035 0.965 15 C 0.013 3.987 16 H 0.099 0.901 17 C -0.171 4.171 18 C 0.049 3.951 19 N -0.318 5.318 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.183 0.817 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.312 18.531 2.029 21.806 hybrid contribution -1.144 0.248 -0.674 1.351 sum 10.168 18.779 1.355 21.398 Atomic orbital electron populations 1.20537 0.88815 1.02903 1.03129 1.19452 0.97705 0.90441 0.97544 1.19872 0.92572 0.99481 1.05449 1.25307 1.00651 1.02438 1.09955 1.83159 1.04310 0.97337 1.68010 1.24611 0.97164 0.97838 1.18258 1.16922 0.83096 0.82437 0.79837 1.90824 1.25069 1.80680 1.42707 1.47876 1.35191 1.08217 1.41365 1.21955 0.88987 1.01092 0.90242 1.21831 1.01693 0.97731 0.95286 1.21446 0.98499 0.94280 1.01266 1.20760 0.92247 0.90003 0.92009 0.96450 1.22424 0.97806 0.78709 0.99760 0.90120 1.23020 0.95674 1.00201 0.98232 1.21733 0.96523 0.92523 0.84357 1.44088 1.57806 1.14323 1.15538 1.18987 1.27705 0.93424 0.95316 0.90370 1.24800 1.00109 0.98184 0.97258 1.69942 1.37806 1.27404 1.21530 0.86152 0.77071 0.82279 0.80452 1.21655 1.21711 1.20747 0.90297 0.91558 0.90692 0.84057 0.81677 0.90149 0.91055 0.90866 0.91582 0.91730 0.91420 0.92176 0.89537 0.92569 0.94224 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 9.46 36.01 0.34 -0.77 16 2 C -0.04 -0.45 5.90 -105.47 -0.62 -1.08 16 3 C -0.14 -1.38 9.97 -41.41 -0.41 -1.79 16 4 C -0.25 -2.13 10.92 29.18 0.32 -1.82 16 5 S 0.20 2.02 20.02 -107.50 -2.15 -0.13 16 6 C -0.26 -3.50 5.51 -36.79 -0.20 -3.70 16 7 C 0.59 9.90 7.13 -12.90 -0.09 9.81 16 8 O -0.52 -10.14 12.67 5.18 0.07 -10.08 16 9 N -0.59 -9.64 2.90 -165.73 -0.48 -10.12 16 10 C 0.10 1.27 5.59 -3.59 -0.02 1.25 16 11 C -0.13 -1.65 5.94 -26.57 -0.16 -1.81 16 12 C -0.12 -1.99 5.43 -27.24 -0.15 -2.14 16 13 C 0.16 3.34 2.58 -68.36 -0.18 3.17 16 14 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 15 C 0.12 2.25 3.30 -66.80 -0.22 2.03 16 16 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 17 C -0.13 -2.84 5.15 -25.20 -0.13 -2.97 16 18 C 0.17 4.40 5.47 -1.69 -0.01 4.39 16 19 N -0.59 -15.25 3.35 -163.28 -0.55 -15.80 16 20 C -0.23 -6.25 9.94 -15.06 -0.15 -6.40 16 21 H 0.08 2.07 7.30 -52.49 -0.38 1.68 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -27.30 10.46 55.49 0.58 -26.72 16 24 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.04 7.21 -51.93 -0.37 0.67 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.08 0.88 4.64 -38.44 -0.18 0.70 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 38 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.94 6.08 -51.93 -0.32 1.62 16 41 H 0.06 1.55 7.18 -51.93 -0.37 1.18 16 42 H 0.04 1.10 7.81 -51.93 -0.41 0.70 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -32.00 343.59 -10.37 -42.37 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.21 Total: 0.31 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.78 Total: -2.12 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.45 Total: -52.64 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.15 Total: -0.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.00 -10.37 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049292202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.389 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds