Wall clock time and date at job start Tue Mar 31 2020 12:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37471 * 123.35553 * 2 1 4 4 C 1.33815 * 115.10242 * 180.27097 * 3 2 1 5 5 S 1.70613 * 110.95403 * 359.74961 * 4 3 2 6 6 C 1.36654 * 123.34779 * 179.80335 * 2 1 3 7 7 C 1.46579 * 125.46149 * 0.02562 * 6 2 1 8 8 O 1.21705 * 119.99688 * 320.60985 * 7 6 2 9 9 N 1.34769 * 120.00328 * 140.60204 * 7 6 2 10 10 C 1.47859 * 122.22497 * 354.59550 * 9 7 6 11 11 C 1.52429 * 110.72861 * 233.56407 * 10 9 7 12 12 C 1.53866 * 110.97759 * 310.04128 * 11 10 9 13 13 C 1.51084 * 107.40645 * 57.98067 * 12 11 10 14 14 H 1.09006 * 108.73538 * 51.42384 * 13 12 11 15 15 C 1.45723 * 122.23280 * 174.56194 * 9 7 6 16 16 H 1.09006 * 111.07137 * 240.54789 * 15 9 7 17 17 C 1.53432 * 117.00455 * 9.61857 * 15 9 7 18 18 C 1.55464 * 101.67183 * 152.98115 * 17 15 9 19 19 N 1.45026 * 119.18862 * 176.06982 * 13 12 11 20 20 C 1.36931 * 126.56172 * 331.17424 * 19 13 12 21 21 H 1.07996 * 119.99991 * 359.97438 * 20 19 13 22 22 C 1.38819 * 119.99880 * 179.97438 * 20 19 13 23 23 N 1.31615 * 120.00138 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99772 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46888 * 90.00248 * 24 22 20 26 26 H 1.48501 * 109.46917 * 209.99740 * 24 22 20 27 27 H 1.48499 * 109.47268 * 329.99981 * 24 22 20 28 28 H 1.08994 * 109.47093 * 270.20237 * 1 2 3 29 29 H 1.09001 * 109.47244 * 30.20116 * 1 2 3 30 30 H 1.09002 * 109.47288 * 150.20022 * 1 2 3 31 31 H 1.08002 * 122.44467 * 359.97438 * 3 2 1 32 32 H 1.07995 * 124.52293 * 179.76332 * 4 3 2 33 33 H 1.08993 * 109.16167 * 352.86279 * 10 9 7 34 34 H 1.09001 * 109.16123 * 112.10246 * 10 9 7 35 35 H 1.08995 * 108.52274 * 190.20433 * 11 10 9 36 36 H 1.09007 * 110.15863 * 70.93732 * 11 10 9 37 37 H 1.08994 * 109.88765 * 298.48207 * 12 11 10 38 38 H 1.09003 * 109.88239 * 177.47460 * 12 11 10 39 39 H 1.09002 * 110.98444 * 271.07856 * 17 15 9 40 40 H 1.08991 * 110.98721 * 34.87920 * 17 15 9 41 41 H 1.08997 * 109.96634 * 96.78132 * 18 17 15 42 42 H 1.09007 * 109.96262 * 217.98435 * 18 17 15 43 43 H 0.96993 * 120.00570 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.1483 0.0000 4 6 3.5872 0.9562 -0.0057 5 16 3.9623 -0.7082 -0.0046 6 6 2.2582 -1.1415 0.0039 7 6 1.7284 -2.5082 0.0081 8 8 0.7487 -2.7789 0.6775 9 7 2.3260 -3.4649 -0.7294 10 6 3.4445 -3.1676 -1.6496 11 6 3.1445 -3.6898 -3.0499 12 6 2.6877 -5.1584 -3.0039 13 6 1.4664 -5.2242 -2.1170 14 1 0.7477 -4.4774 -2.4547 15 6 1.9133 -4.8613 -0.6726 16 1 2.7319 -5.4986 -0.3378 17 6 0.6198 -5.1750 0.0906 18 6 0.1424 -6.4730 -0.6196 19 7 0.7709 -6.4876 -1.9637 20 6 0.7059 -7.4998 -2.8836 21 1 1.2054 -7.3972 -3.8356 22 6 -0.0021 -8.6578 -2.5925 23 7 -0.6105 -8.7831 -1.4322 24 14 -0.0901 -10.0389 -3.8472 25 1 1.0430 -10.9747 -3.6336 26 1 -1.3727 -10.7705 -3.6889 27 1 -0.0106 -9.4697 -5.2165 28 1 -0.3633 0.0036 1.0276 29 1 -0.3634 0.8882 -0.5170 30 1 -0.3634 -0.8918 -0.5107 31 1 1.8202 2.1334 -0.0004 32 1 4.3206 1.7489 -0.0102 33 1 3.5834 -2.0881 -1.7068 34 1 4.3557 -3.6255 -1.2648 35 1 4.0527 -3.6179 -3.6482 36 1 2.3639 -3.0884 -3.5159 37 1 3.4808 -5.7806 -2.5895 38 1 2.4354 -5.4997 -4.0080 39 1 0.8238 -5.3596 1.1454 40 1 -0.1088 -4.3734 -0.0299 41 1 0.4601 -7.3468 -0.0508 42 1 -0.9434 -6.4667 -0.7160 43 1 -1.1049 -9.5924 -1.2286 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049292202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:06 Heat of formation + Delta-G solvation = 18.856850 kcal Electronic energy + Delta-G solvation = -25693.280868 eV Core-core repulsion = 22251.361230 eV Total energy + Delta-G solvation = -3441.919639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76056 -39.75559 -38.44938 -36.99635 -34.31229 -33.90145 -31.95026 -31.00585 -29.85487 -29.02177 -26.42288 -26.00558 -24.33788 -22.91324 -22.86648 -21.72897 -21.03590 -19.18409 -18.93458 -18.24905 -17.20226 -16.88053 -16.78347 -16.30233 -16.17567 -15.72381 -15.50817 -15.12261 -14.92041 -14.58976 -14.37696 -14.14687 -13.89498 -13.82724 -13.46942 -13.24767 -13.18408 -13.09721 -12.89890 -12.71621 -12.66222 -12.32286 -12.10899 -12.02172 -11.81903 -11.75962 -11.73259 -11.58159 -11.44868 -10.79178 -10.49731 -9.79105 -9.56312 -9.25240 -8.92021 -7.84153 -5.21416 -0.37204 0.47280 0.99952 1.45846 1.48038 1.48705 1.56965 1.81541 2.11953 2.50475 3.29376 3.34392 3.55520 3.89606 3.93883 3.99214 4.03478 4.06424 4.21155 4.26879 4.29903 4.41674 4.53889 4.55256 4.60246 4.64808 4.71310 4.73833 4.88215 4.98995 5.02287 5.06199 5.07845 5.11575 5.25956 5.38171 5.43390 5.46234 5.47973 5.57902 5.59446 5.71386 6.17073 6.41319 7.04785 7.09725 7.74803 8.45143 9.27779 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.003632 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.555712 B = 7708.198319 C = 8271.637142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.038 4.038 3 C -0.155 4.155 4 C -0.224 4.224 5 S 0.243 5.757 6 C -0.306 4.306 7 C 0.586 3.414 8 O -0.560 6.560 9 N -0.596 5.596 10 C 0.095 3.905 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.154 3.846 14 H -0.005 1.005 15 C 0.133 3.867 16 H 0.085 0.915 17 C -0.116 4.116 18 C 0.184 3.816 19 N -0.612 5.612 20 C -0.234 4.234 21 H 0.090 0.910 22 C -0.069 4.069 23 N -0.955 5.955 24 Si 0.980 3.020 25 H -0.283 1.283 26 H -0.298 1.298 27 H -0.267 1.267 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.167 0.833 32 H 0.202 0.798 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.028 0.972 42 H -0.001 1.001 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.025 22.567 0.375 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.053 4.053 3 C -0.185 4.185 4 C -0.361 4.361 5 S 0.512 5.488 6 C -0.425 4.425 7 C 0.375 3.625 8 O -0.441 6.441 9 N -0.328 5.328 10 C -0.026 4.026 11 C -0.156 4.156 12 C -0.149 4.149 13 C 0.046 3.954 14 H 0.012 0.988 15 C 0.028 3.972 16 H 0.103 0.897 17 C -0.155 4.155 18 C 0.059 3.941 19 N -0.336 5.336 20 C -0.363 4.363 21 H 0.108 0.892 22 C -0.262 4.262 23 N -0.604 5.604 24 Si 0.808 3.192 25 H -0.210 1.210 26 H -0.225 1.225 27 H -0.191 1.191 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.185 0.815 32 H 0.219 0.781 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.017 0.983 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.823 21.432 0.684 26.067 hybrid contribution -2.217 -0.509 -0.249 2.289 sum 12.606 20.923 0.435 24.431 Atomic orbital electron populations 1.20518 0.89449 1.02595 1.02796 1.19718 0.97763 0.91247 0.96600 1.20039 0.92858 0.99564 1.06026 1.25793 1.00983 1.02639 1.06710 1.82936 1.00737 0.97992 1.67149 1.24362 1.00116 0.96031 1.22033 1.17432 0.82411 0.83760 0.78918 1.90784 1.27081 1.81764 1.44457 1.47937 1.36109 1.06602 1.42172 1.22284 0.88301 1.02869 0.89157 1.21815 1.03303 0.94183 0.96280 1.21418 0.96390 0.97622 0.99518 1.20919 0.93095 0.87069 0.94317 0.98786 1.22020 0.96487 0.81172 0.97564 0.89716 1.22743 0.96944 0.97523 0.98259 1.21423 0.94223 0.93451 0.85001 1.44346 1.58565 1.15523 1.15198 1.19425 1.27020 0.93782 0.96029 0.89246 1.25707 1.00275 1.00885 0.99292 1.70177 1.38919 1.27708 1.23596 0.85049 0.76542 0.78963 0.78607 1.20966 1.22502 1.19144 0.90720 0.88826 0.93894 0.81525 0.78061 0.87889 0.88659 0.86657 0.92122 0.91276 0.92296 0.91737 0.90804 0.95411 0.98259 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.22 9.46 71.24 0.67 -1.55 16 2 C -0.04 -0.86 5.90 -20.42 -0.12 -0.98 16 3 C -0.15 -2.40 9.97 21.08 0.21 -2.19 16 4 C -0.22 -2.77 10.92 66.81 0.73 -2.04 16 5 S 0.24 3.90 20.02 -56.49 -1.13 2.77 16 6 C -0.31 -7.84 5.51 24.08 0.13 -7.70 16 7 C 0.59 19.81 7.13 86.42 0.62 20.43 16 8 O -0.56 -23.20 12.67 -4.36 -0.06 -23.25 16 9 N -0.60 -19.03 2.90 -796.46 -2.31 -21.34 16 10 C 0.10 2.13 5.59 85.93 0.48 2.61 16 11 C -0.12 -2.71 5.94 30.70 0.18 -2.52 16 12 C -0.11 -3.67 5.43 30.26 0.16 -3.51 16 13 C 0.15 6.63 2.58 45.50 0.12 6.75 16 14 H -0.01 -0.25 8.06 -2.38 -0.02 -0.27 16 15 C 0.13 5.21 3.30 46.14 0.15 5.36 16 16 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 17 C -0.12 -5.30 5.15 31.59 0.16 -5.14 16 18 C 0.18 10.07 5.47 86.86 0.48 10.54 16 19 N -0.61 -32.87 3.35 -670.50 -2.25 -35.11 16 20 C -0.23 -13.26 9.94 84.04 0.84 -12.42 16 21 H 0.09 4.75 7.30 -2.91 -0.02 4.72 16 22 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 23 N -0.95 -59.61 10.46 21.65 0.23 -59.38 16 24 Si 0.98 46.46 29.55 68.60 2.03 48.48 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.27 7.21 -2.39 -0.02 1.25 16 31 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.10 1.87 4.64 -10.97 -0.05 1.82 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 38 H 0.06 2.04 7.70 -2.39 -0.02 2.02 16 39 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.07 3.58 6.08 -2.39 -0.01 3.56 16 41 H 0.03 1.65 7.18 -2.39 -0.02 1.63 16 42 H 0.00 -0.05 7.81 -2.38 -0.02 -0.07 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -75.57 343.59 2.76 -72.82 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.97 Total: 10.94 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.28 Total: 4.08 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -4.33 Total: -115.84 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.13 Total: 2.77 kcal Total: -75.57 2.76 -72.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049292202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.673 kcal (2) G-P(sol) polarization free energy of solvation -75.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds