Wall clock time and date at job start Tue Mar 31 2020 12:13:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.37471 * 123.34557 * 2 1
4 4 C 1.33820 * 115.09533 * 179.97438 * 3 2 1
5 5 S 1.70610 * 110.95872 * 0.02562 * 4 3 2
6 6 C 1.36645 * 123.35309 * 179.71121 * 2 1 3
7 7 C 1.46580 * 125.45992 * 0.02579 * 6 2 1
8 8 O 1.21703 * 119.99786 * 42.41797 * 7 6 2
9 9 N 1.34780 * 120.00591 * 222.41512 * 7 6 2
10 10 C 1.46806 * 119.56944 * 5.38499 * 9 7 6
11 11 C 1.54497 * 106.66505 * 126.54452 * 10 9 7
12 12 C 1.52732 * 107.46252 * 60.00900 * 11 10 9
13 13 C 1.53013 * 110.80017 * 294.82897 * 12 11 10
14 14 H 1.09001 * 111.38925 * 291.24371 * 13 12 11
15 15 C 1.45116 * 119.57782 * 185.66041 * 9 7 6
16 16 H 1.08999 * 109.97214 * 348.03607 * 15 9 7
17 17 C 1.54421 * 111.60607 * 111.32489 * 15 9 7
18 18 C 1.54564 * 102.44862 * 156.57366 * 17 15 9
19 19 N 1.47122 * 107.25399 * 338.33259 * 18 17 15
20 20 C 1.36940 * 125.76528 * 177.43915 * 19 18 17
21 21 H 1.07997 * 119.99925 * 179.97438 * 20 19 18
22 22 C 1.38807 * 120.00300 * 359.95247 * 20 19 18
23 23 N 1.31621 * 119.99799 * 0.02562 * 22 20 19
24 24 Si 1.86799 * 120.00212 * 180.02562 * 22 20 19
25 25 H 1.48496 * 109.47285 * 89.99696 * 24 22 20
26 26 H 1.48505 * 109.47250 * 209.99940 * 24 22 20
27 27 H 1.48499 * 109.46846 * 329.99653 * 24 22 20
28 28 H 1.09005 * 109.47345 * 90.02669 * 1 2 3
29 29 H 1.08993 * 109.47657 * 330.02251 * 1 2 3
30 30 H 1.08999 * 109.46989 * 210.02124 * 1 2 3
31 31 H 1.08000 * 122.45456 * 359.94214 * 3 2 1
32 32 H 1.08004 * 124.51863 * 180.02562 * 4 3 2
33 33 H 1.08998 * 109.83106 * 247.49472 * 10 9 7
34 34 H 1.08999 * 109.83831 * 8.45369 * 10 9 7
35 35 H 1.08996 * 111.27462 * 299.95687 * 11 10 9
36 36 H 1.09007 * 109.13333 * 178.83411 * 11 10 9
37 37 H 1.09003 * 109.21286 * 174.49374 * 12 11 10
38 38 H 1.08996 * 109.21516 * 55.17248 * 12 11 10
39 39 H 1.09006 * 110.80878 * 274.80985 * 17 15 9
40 40 H 1.08997 * 110.81362 * 38.33168 * 17 15 9
41 41 H 1.08992 * 109.88875 * 218.91895 * 18 17 15
42 42 H 1.09007 * 109.88312 * 97.74171 * 18 17 15
43 43 H 0.97000 * 119.99721 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2627 1.1484 0.0000
4 6 3.5870 0.9564 0.0005
5 16 3.9624 -0.7079 0.0004
6 6 2.2583 -1.1414 0.0058
7 6 1.7285 -2.5081 0.0121
8 8 0.7834 -2.7976 -0.6978
9 7 2.2881 -3.4442 0.8041
10 6 3.3488 -3.0589 1.7430
11 6 2.9101 -3.5602 3.1370
12 6 2.7541 -5.0771 3.0504
13 6 1.6136 -5.4527 2.1020
14 1 0.6445 -5.1727 2.5151
15 6 1.8385 -4.8210 0.7133
16 1 0.9219 -4.8754 0.1261
17 6 2.9275 -5.7363 0.1125
18 6 2.5285 -7.1281 0.6535
19 7 1.6949 -6.9103 1.8460
20 6 1.0961 -7.8889 2.5936
21 1 0.5018 -7.6227 3.4552
22 6 1.2526 -9.2231 2.2438
23 7 1.9770 -9.5475 1.1939
24 14 0.4352 -10.5580 3.2632
25 1 -0.9205 -10.8329 2.7233
26 1 1.2523 -11.7966 3.2036
27 1 0.3241 -10.1057 4.6733
28 1 -0.3634 -0.0005 -1.0277
29 1 -0.3634 0.8901 0.5134
30 1 -0.3633 -0.8898 0.5142
31 1 1.8200 2.1335 -0.0009
32 1 4.3204 1.7492 0.0010
33 1 4.2941 -3.5068 1.4371
34 1 3.4440 -1.9733 1.7684
35 1 1.9640 -3.1111 3.4391
36 1 3.6824 -3.3122 3.8652
37 1 2.5401 -5.4729 4.0431
38 1 3.6835 -5.5129 2.6839
39 1 2.8902 -5.7189 -0.9768
40 1 3.9158 -5.4498 0.4719
41 1 3.4220 -7.6910 0.9235
42 1 1.9602 -7.6706 -0.1021
43 1 2.0860 -10.4798 0.9493
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049292210.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:13:13
Heat of formation + Delta-G solvation = 31.306879 kcal
Electronic energy + Delta-G solvation = -25572.411167 eV
Core-core repulsion = 22131.031402 eV
Total energy + Delta-G solvation = -3441.379765 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.42088 -38.64836 -37.39925 -35.25594 -32.39398 -32.28616 -31.06867 -29.29861
-28.52357 -27.75562 -24.78994 -24.29636 -23.54046 -22.10060 -21.34797 -20.02433
-18.73289 -18.39756 -17.80843 -16.88635 -16.33693 -15.76710 -15.12503 -14.83163
-14.73156 -14.27552 -13.94319 -13.84309 -13.52221 -13.51710 -13.12822 -12.90164
-12.48245 -12.37271 -12.29255 -12.04469 -11.91152 -11.84502 -11.36563 -11.14781
-11.02591 -10.92696 -10.78092 -10.64404 -10.50171 -10.11096 -10.07617 -9.70450
-9.61836 -9.60627 -8.90564 -8.61847 -8.49672 -8.27271 -6.85883 -5.70527
-3.04728 0.47028 1.27838 1.74228 2.29757 3.01110 3.25152 3.41234
3.46258 3.47837 4.48854 4.53453 4.68468 4.93758 5.06763 5.13575
5.18130 5.27766 5.35737 5.37049 5.48387 5.57933 5.60541 5.63821
5.70383 5.76662 5.83106 5.86353 5.99551 6.11459 6.18304 6.21710
6.27075 6.31719 6.36735 6.50263 6.59763 6.73228 6.96633 7.06380
7.54068 7.56826 7.62409 7.82770 8.22953 8.29153 9.21117 9.80775
10.46661 11.40734
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.027386 B = 0.003421 C = 0.003352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1022.174144 B = 8182.148388 C = 8352.456116
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C -0.038 4.038
3 C -0.143 4.143
4 C -0.246 4.246
5 S 0.210 5.790
6 C -0.259 4.259
7 C 0.584 3.416
8 O -0.527 6.527
9 N -0.586 5.586
10 C 0.096 3.904
11 C -0.128 4.128
12 C -0.131 4.131
13 C 0.157 3.843
14 H 0.059 0.941
15 C 0.131 3.869
16 H 0.104 0.896
17 C -0.152 4.152
18 C 0.181 3.819
19 N -0.597 5.597
20 C -0.226 4.226
21 H 0.078 0.922
22 C -0.007 4.007
23 N -0.921 5.921
24 Si 0.912 3.088
25 H -0.289 1.289
26 H -0.291 1.291
27 H -0.282 1.282
28 H 0.078 0.922
29 H 0.066 0.934
30 H 0.072 0.928
31 H 0.142 0.858
32 H 0.166 0.834
33 H 0.075 0.925
34 H 0.082 0.918
35 H 0.066 0.934
36 H 0.068 0.932
37 H 0.060 0.940
38 H 0.063 0.937
39 H 0.061 0.939
40 H 0.059 0.941
41 H 0.042 0.958
42 H 0.052 0.948
43 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.399 21.725 -0.543 22.392
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.052 4.052
3 C -0.174 4.174
4 C -0.383 4.383
5 S 0.479 5.521
6 C -0.379 4.379
7 C 0.371 3.629
8 O -0.405 6.405
9 N -0.317 5.317
10 C -0.028 4.028
11 C -0.167 4.167
12 C -0.171 4.171
13 C 0.049 3.951
14 H 0.077 0.923
15 C 0.027 3.973
16 H 0.122 0.878
17 C -0.192 4.192
18 C 0.056 3.944
19 N -0.322 5.322
20 C -0.355 4.355
21 H 0.096 0.904
22 C -0.203 4.203
23 N -0.568 5.568
24 Si 0.742 3.258
25 H -0.216 1.216
26 H -0.217 1.217
27 H -0.207 1.207
28 H 0.097 0.903
29 H 0.085 0.915
30 H 0.091 0.909
31 H 0.160 0.840
32 H 0.184 0.816
33 H 0.094 0.906
34 H 0.100 0.900
35 H 0.085 0.915
36 H 0.086 0.914
37 H 0.079 0.921
38 H 0.082 0.918
39 H 0.080 0.920
40 H 0.078 0.922
41 H 0.060 0.940
42 H 0.070 0.930
43 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 6.281 20.450 -0.928 21.413
hybrid contribution -1.432 0.229 0.535 1.546
sum 4.849 20.678 -0.393 21.243
Atomic orbital electron populations
1.20529 0.88907 1.02807 1.03120 1.19429 0.97637 0.90447 0.97731
1.19858 0.92561 0.99450 1.05562 1.25318 1.00672 1.02466 1.09840
1.83251 1.03879 0.97220 1.67743 1.24486 0.97421 0.97632 1.18386
1.17060 0.82738 0.82856 0.80276 1.90821 1.27322 1.80433 1.41884
1.47533 1.37736 1.08490 1.37981 1.22370 0.90525 1.00369 0.89525
1.22073 1.01400 0.98115 0.95149 1.22122 1.00974 0.92857 1.01180
1.21316 0.96150 0.86011 0.91672 0.92319 1.21836 0.98675 0.77861
0.98922 0.87839 1.23138 0.97719 0.98519 0.99783 1.21175 0.94901
0.89428 0.88875 1.44694 1.58189 0.98780 1.30526 1.19031 1.24477
0.85323 1.06619 0.90434 1.24791 1.00281 0.97025 0.98222 1.69957
1.43228 1.16543 1.27111 0.86123 0.78697 0.81564 0.79387 1.21603
1.21726 1.20733 0.90317 0.91471 0.90886 0.84033 0.81609 0.90647
0.89963 0.91482 0.91364 0.92099 0.91834 0.91997 0.92226 0.94011
0.92974 0.93745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.05 9.51 36.01 0.34 -0.71 16
2 C -0.04 -0.45 5.90 -105.48 -0.62 -1.07 16
3 C -0.14 -1.33 9.97 -41.41 -0.41 -1.75 16
4 C -0.25 -2.08 10.92 29.18 0.32 -1.77 16
5 S 0.21 2.09 20.15 -107.50 -2.17 -0.07 16
6 C -0.26 -3.44 5.27 -36.80 -0.19 -3.64 16
7 C 0.58 9.66 6.99 -12.90 -0.09 9.57 16
8 O -0.53 -10.44 15.38 5.19 0.08 -10.36 16
9 N -0.59 -9.37 2.70 -165.94 -0.45 -9.82 16
10 C 0.10 1.23 5.32 -3.09 -0.02 1.22 16
11 C -0.13 -1.71 6.17 -26.08 -0.16 -1.87 16
12 C -0.13 -2.28 5.12 -26.86 -0.14 -2.42 16
13 C 0.16 3.21 3.54 -66.35 -0.23 2.97 16
14 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
15 C 0.13 2.50 3.12 -67.29 -0.21 2.28 16
16 H 0.10 2.22 6.93 -51.93 -0.36 1.86 16
17 C -0.15 -2.94 6.10 -25.16 -0.15 -3.10 16
18 C 0.18 4.38 5.24 -2.88 -0.02 4.36 16
19 N -0.60 -14.93 2.95 -162.19 -0.48 -15.41 16
20 C -0.23 -6.21 10.29 -15.06 -0.16 -6.37 16
21 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16
22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16
23 N -0.92 -26.89 10.33 55.49 0.57 -26.32 16
24 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16
25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
27 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16
29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
30 H 0.07 0.95 7.29 -51.93 -0.38 0.57 16
31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16
32 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16
33 H 0.08 0.92 7.51 -51.93 -0.39 0.53 16
34 H 0.08 0.92 4.61 -39.43 -0.18 0.73 16
35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16
37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
38 H 0.06 1.17 7.20 -51.93 -0.37 0.80 16
39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16
40 H 0.06 1.06 6.81 -51.93 -0.35 0.70 16
41 H 0.04 1.10 7.60 -51.93 -0.39 0.71 16
42 H 0.05 1.41 7.30 -51.93 -0.38 1.03 16
43 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16
LS Contribution 345.82 15.07 5.21 5.21
Total: -1.00 -31.42 345.82 -10.25 -41.67
By element:
Atomic # 1 Polarization: 6.76 SS G_CDS: -6.16 Total: 0.60 kcal
Atomic # 6 Polarization: -0.73 SS G_CDS: -1.84 Total: -2.57 kcal
Atomic # 7 Polarization: -51.19 SS G_CDS: -0.35 Total: -51.55 kcal
Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal
Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal
Atomic # 16 Polarization: 2.09 SS G_CDS: -2.17 Total: -0.07 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -31.42 -10.25 -41.67 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049292210.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.980 kcal
(2) G-P(sol) polarization free energy of solvation -31.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.307 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds