Wall clock time and date at job start Tue Mar 31 2020 12:13:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.37471 * 123.34557 * 2 1
4 4 C 1.33820 * 115.09533 * 179.97438 * 3 2 1
5 5 S 1.70610 * 110.95872 * 0.02562 * 4 3 2
6 6 C 1.36645 * 123.35309 * 179.71121 * 2 1 3
7 7 C 1.46580 * 125.45992 * 0.02579 * 6 2 1
8 8 O 1.21703 * 119.99786 * 42.41797 * 7 6 2
9 9 N 1.34780 * 120.00591 * 222.41512 * 7 6 2
10 10 C 1.46806 * 119.56944 * 5.38499 * 9 7 6
11 11 C 1.54497 * 106.66505 * 126.54452 * 10 9 7
12 12 C 1.52732 * 107.46252 * 60.00900 * 11 10 9
13 13 C 1.53013 * 110.80017 * 294.82897 * 12 11 10
14 14 H 1.09001 * 111.38925 * 291.24371 * 13 12 11
15 15 C 1.45116 * 119.57782 * 185.66041 * 9 7 6
16 16 H 1.08999 * 109.97214 * 348.03607 * 15 9 7
17 17 C 1.54421 * 111.60607 * 111.32489 * 15 9 7
18 18 C 1.54564 * 102.44862 * 156.57366 * 17 15 9
19 19 N 1.47122 * 107.25399 * 338.33259 * 18 17 15
20 20 C 1.36940 * 125.76528 * 177.43915 * 19 18 17
21 21 H 1.07997 * 119.99925 * 179.97438 * 20 19 18
22 22 C 1.38807 * 120.00300 * 359.95247 * 20 19 18
23 23 N 1.31621 * 119.99799 * 0.02562 * 22 20 19
24 24 Si 1.86799 * 120.00212 * 180.02562 * 22 20 19
25 25 H 1.48496 * 109.47285 * 89.99696 * 24 22 20
26 26 H 1.48505 * 109.47250 * 209.99940 * 24 22 20
27 27 H 1.48499 * 109.46846 * 329.99653 * 24 22 20
28 28 H 1.09005 * 109.47345 * 90.02669 * 1 2 3
29 29 H 1.08993 * 109.47657 * 330.02251 * 1 2 3
30 30 H 1.08999 * 109.46989 * 210.02124 * 1 2 3
31 31 H 1.08000 * 122.45456 * 359.94214 * 3 2 1
32 32 H 1.08004 * 124.51863 * 180.02562 * 4 3 2
33 33 H 1.08998 * 109.83106 * 247.49472 * 10 9 7
34 34 H 1.08999 * 109.83831 * 8.45369 * 10 9 7
35 35 H 1.08996 * 111.27462 * 299.95687 * 11 10 9
36 36 H 1.09007 * 109.13333 * 178.83411 * 11 10 9
37 37 H 1.09003 * 109.21286 * 174.49374 * 12 11 10
38 38 H 1.08996 * 109.21516 * 55.17248 * 12 11 10
39 39 H 1.09006 * 110.80878 * 274.80985 * 17 15 9
40 40 H 1.08997 * 110.81362 * 38.33168 * 17 15 9
41 41 H 1.08992 * 109.88875 * 218.91895 * 18 17 15
42 42 H 1.09007 * 109.88312 * 97.74171 * 18 17 15
43 43 H 0.97000 * 119.99721 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2627 1.1484 0.0000
4 6 3.5870 0.9564 0.0005
5 16 3.9624 -0.7079 0.0004
6 6 2.2583 -1.1414 0.0058
7 6 1.7285 -2.5081 0.0121
8 8 0.7834 -2.7976 -0.6978
9 7 2.2881 -3.4442 0.8041
10 6 3.3488 -3.0589 1.7430
11 6 2.9101 -3.5602 3.1370
12 6 2.7541 -5.0771 3.0504
13 6 1.6136 -5.4527 2.1020
14 1 0.6445 -5.1727 2.5151
15 6 1.8385 -4.8210 0.7133
16 1 0.9219 -4.8754 0.1261
17 6 2.9275 -5.7363 0.1125
18 6 2.5285 -7.1281 0.6535
19 7 1.6949 -6.9103 1.8460
20 6 1.0961 -7.8889 2.5936
21 1 0.5018 -7.6227 3.4552
22 6 1.2526 -9.2231 2.2438
23 7 1.9770 -9.5475 1.1939
24 14 0.4352 -10.5580 3.2632
25 1 -0.9205 -10.8329 2.7233
26 1 1.2523 -11.7966 3.2036
27 1 0.3241 -10.1057 4.6733
28 1 -0.3634 -0.0005 -1.0277
29 1 -0.3634 0.8901 0.5134
30 1 -0.3633 -0.8898 0.5142
31 1 1.8200 2.1335 -0.0009
32 1 4.3204 1.7492 0.0010
33 1 4.2941 -3.5068 1.4371
34 1 3.4440 -1.9733 1.7684
35 1 1.9640 -3.1111 3.4391
36 1 3.6824 -3.3122 3.8652
37 1 2.5401 -5.4729 4.0431
38 1 3.6835 -5.5129 2.6839
39 1 2.8902 -5.7189 -0.9768
40 1 3.9158 -5.4498 0.4719
41 1 3.4220 -7.6910 0.9235
42 1 1.9602 -7.6706 -0.1021
43 1 2.0860 -10.4798 0.9493
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049292210.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:13:12
Heat of formation + Delta-G solvation = 13.131758 kcal
Electronic energy + Delta-G solvation = -25573.199299 eV
Core-core repulsion = 22131.031402 eV
Total energy + Delta-G solvation = -3442.167897 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.130 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.76490 -39.85745 -38.55017 -36.80841 -34.21597 -33.76280 -31.94606 -31.00885
-30.00598 -28.98758 -26.41921 -25.91223 -24.41611 -23.44290 -22.53459 -21.89659
-20.06466 -19.28792 -19.09276 -18.76635 -17.51640 -16.80428 -16.77289 -16.36964
-15.98300 -15.86481 -15.15446 -15.06806 -14.87550 -14.69999 -14.34798 -14.09348
-13.94912 -13.79793 -13.56749 -13.25695 -13.09955 -12.99728 -12.84677 -12.70021
-12.62350 -12.38878 -12.32205 -12.06359 -11.96848 -11.84681 -11.62206 -11.56022
-11.22798 -11.03368 -10.72282 -9.84134 -9.57967 -9.25736 -8.91001 -7.84619
-5.20766 -0.37128 0.44543 1.00351 1.45156 1.47200 1.47563 1.55716
1.80479 2.06274 2.49477 3.32418 3.43805 3.55373 3.82224 3.91821
3.99646 4.00026 4.07858 4.08192 4.28268 4.32668 4.41197 4.50107
4.54535 4.63842 4.65227 4.72974 4.74444 4.80305 4.92992 5.02907
5.03212 5.07073 5.14495 5.31588 5.38341 5.41703 5.46536 5.52621
5.58518 5.62750 5.72258 6.17114 6.31904 7.02018 7.08502 7.74038
8.39676 9.25464
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.027386 B = 0.003421 C = 0.003352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1022.174144 B = 8182.148388 C = 8352.456116
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.096 4.096
2 C -0.035 4.035
3 C -0.153 4.153
4 C -0.222 4.222
5 S 0.238 5.762
6 C -0.306 4.306
7 C 0.583 3.417
8 O -0.574 6.574
9 N -0.586 5.586
10 C 0.093 3.907
11 C -0.118 4.118
12 C -0.120 4.120
13 C 0.153 3.847
14 H 0.046 0.954
15 C 0.146 3.854
16 H 0.070 0.930
17 C -0.134 4.134
18 C 0.193 3.807
19 N -0.617 5.617
20 C -0.237 4.237
21 H 0.081 0.919
22 C -0.065 4.065
23 N -0.951 5.951
24 Si 0.978 3.022
25 H -0.289 1.289
26 H -0.293 1.293
27 H -0.267 1.267
28 H 0.073 0.927
29 H 0.096 0.904
30 H 0.044 0.956
31 H 0.169 0.831
32 H 0.202 0.798
33 H 0.090 0.910
34 H 0.108 0.892
35 H 0.067 0.933
36 H 0.105 0.895
37 H 0.050 0.950
38 H 0.055 0.945
39 H 0.067 0.933
40 H 0.084 0.916
41 H 0.014 0.986
42 H 0.011 0.989
43 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.195 25.338 0.701 26.349
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.051 4.051
3 C -0.184 4.184
4 C -0.359 4.359
5 S 0.507 5.493
6 C -0.426 4.426
7 C 0.372 3.628
8 O -0.455 6.455
9 N -0.316 5.316
10 C -0.029 4.029
11 C -0.157 4.157
12 C -0.159 4.159
13 C 0.045 3.955
14 H 0.064 0.936
15 C 0.041 3.959
16 H 0.088 0.912
17 C -0.173 4.173
18 C 0.068 3.932
19 N -0.342 5.342
20 C -0.366 4.366
21 H 0.099 0.901
22 C -0.257 4.257
23 N -0.600 5.600
24 Si 0.806 3.194
25 H -0.217 1.217
26 H -0.220 1.220
27 H -0.192 1.192
28 H 0.092 0.908
29 H 0.115 0.885
30 H 0.063 0.937
31 H 0.187 0.813
32 H 0.219 0.781
33 H 0.108 0.892
34 H 0.126 0.874
35 H 0.085 0.915
36 H 0.123 0.877
37 H 0.069 0.931
38 H 0.074 0.926
39 H 0.086 0.914
40 H 0.103 0.897
41 H 0.033 0.967
42 H 0.029 0.971
43 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 8.097 24.119 0.350 25.444
hybrid contribution -2.006 -0.771 0.125 2.153
sum 6.091 23.348 0.475 24.134
Atomic orbital electron populations
1.20538 0.89240 1.02832 1.02830 1.19727 0.97866 0.91092 0.96412
1.20051 0.92758 0.99629 1.05929 1.25788 1.01082 1.02415 1.06643
1.83103 1.00739 0.98226 1.67218 1.24241 1.00089 0.95849 1.22383
1.17565 0.81914 0.84131 0.79185 1.90785 1.29510 1.81553 1.43684
1.47521 1.38464 1.06916 1.38728 1.22660 0.89833 1.02141 0.88228
1.22039 1.02799 0.94366 0.96487 1.21907 0.98659 0.96145 0.99237
1.21502 0.97003 0.83713 0.93245 0.93581 1.21312 0.97320 0.79991
0.97288 0.91165 1.22946 0.98888 0.95497 0.99965 1.20848 0.92973
0.91572 0.87844 1.44938 1.58181 1.00554 1.30568 1.19393 1.24163
0.86257 1.06763 0.90103 1.25619 1.01368 0.99189 0.99571 1.70174
1.44740 1.16350 1.28714 0.85088 0.77284 0.78497 0.78514 1.21661
1.21994 1.19221 0.90791 0.88543 0.93668 0.81330 0.78061 0.89208
0.87419 0.91473 0.87697 0.93089 0.92613 0.91441 0.89717 0.96734
0.97100 0.94418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.05 9.51 71.24 0.68 -1.37 16
2 C -0.04 -0.76 5.90 -20.42 -0.12 -0.88 16
3 C -0.15 -2.22 9.97 21.08 0.21 -2.01 16
4 C -0.22 -2.64 10.92 66.82 0.73 -1.91 16
5 S 0.24 3.86 20.15 -56.49 -1.14 2.72 16
6 C -0.31 -7.63 5.27 24.07 0.13 -7.50 16
7 C 0.58 19.37 6.99 86.42 0.60 19.97 16
8 O -0.57 -23.85 15.38 -4.36 -0.07 -23.92 16
9 N -0.59 -18.47 2.70 -797.13 -2.16 -20.62 16
10 C 0.09 2.15 5.32 86.83 0.46 2.61 16
11 C -0.12 -2.83 6.17 31.01 0.19 -2.64 16
12 C -0.12 -4.07 5.12 30.51 0.16 -3.91 16
13 C 0.15 6.41 3.54 45.08 0.16 6.56 16
14 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16
15 C 0.15 5.75 3.12 46.14 0.14 5.90 16
16 H 0.07 3.23 6.93 -2.39 -0.02 3.21 16
17 C -0.13 -5.29 6.10 31.61 0.19 -5.10 16
18 C 0.19 9.85 5.24 86.79 0.45 10.30 16
19 N -0.62 -32.22 2.95 -667.06 -1.97 -34.18 16
20 C -0.24 -13.45 10.29 84.03 0.86 -12.59 16
21 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16
22 C -0.06 -3.73 5.49 84.86 0.47 -3.26 16
23 N -0.95 -58.06 10.33 21.65 0.22 -57.84 16
24 Si 0.98 46.55 29.55 68.60 2.03 48.58 16
25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16
27 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16
28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16
29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16
30 H 0.04 1.21 7.29 -2.39 -0.02 1.19 16
31 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16
32 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16
33 H 0.09 1.87 7.51 -2.39 -0.02 1.85 16
34 H 0.11 2.00 4.61 -10.33 -0.05 1.95 16
35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16
36 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16
37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
38 H 0.06 1.99 7.20 -2.39 -0.02 1.97 16
39 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16
40 H 0.08 2.92 6.81 -2.39 -0.02 2.91 16
41 H 0.01 0.81 7.60 -2.39 -0.02 0.79 16
42 H 0.01 0.63 7.30 -2.38 -0.02 0.61 16
43 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16
Total: -1.00 -73.81 345.82 3.22 -70.60
By element:
Atomic # 1 Polarization: 9.52 SS G_CDS: 0.98 Total: 10.49 kcal
Atomic # 6 Polarization: -1.14 SS G_CDS: 5.32 Total: 4.18 kcal
Atomic # 7 Polarization: -108.75 SS G_CDS: -3.90 Total: -112.65 kcal
Atomic # 8 Polarization: -23.85 SS G_CDS: -0.07 Total: -23.92 kcal
Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal
Atomic # 16 Polarization: 3.86 SS G_CDS: -1.14 Total: 2.72 kcal
Total: -73.81 3.22 -70.60 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049292210.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.729 kcal
(2) G-P(sol) polarization free energy of solvation -73.814 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.914 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.132 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds