Wall clock time and date at job start Tue Mar 31 2020 12:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33812 * 122.44939 * 2 1 4 4 S 1.70618 * 110.95380 * 179.97438 * 3 2 1 5 5 C 1.75830 * 91.56342 * 359.83257 * 4 3 2 6 6 C 1.46584 * 125.45719 * 180.18712 * 5 4 3 7 7 O 1.21695 * 119.99864 * 134.47073 * 6 5 4 8 8 N 1.34773 * 119.99818 * 314.46336 * 6 5 4 9 9 C 1.46805 * 119.57893 * 3.43444 * 8 6 5 10 10 C 1.53463 * 107.59508 * 232.06204 * 9 8 6 11 11 C 1.52734 * 108.43788 * 301.91661 * 10 9 8 12 12 C 1.53008 * 110.80967 * 63.76805 * 11 10 9 13 13 H 1.09000 * 111.38932 * 69.73055 * 12 11 10 14 14 C 1.45123 * 119.57784 * 183.16782 * 8 6 5 15 15 H 1.08997 * 109.96616 * 11.93482 * 14 8 6 16 16 C 1.53905 * 111.89440 * 248.66154 * 14 8 6 17 17 C 1.54567 * 102.54854 * 203.53985 * 16 14 8 18 18 N 1.47126 * 107.25551 * 21.71137 * 17 16 14 19 19 C 1.36939 * 125.76660 * 182.59796 * 18 17 16 20 20 H 1.08001 * 119.99787 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00075 * 359.97438 * 19 18 17 22 22 N 1.31624 * 120.00160 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99887 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47125 * 60.00092 * 23 21 19 25 25 H 1.48500 * 109.47039 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.47221 * 300.00079 * 23 21 19 27 27 C 1.36647 * 109.08268 * 0.28636 * 5 4 3 28 28 H 1.08997 * 109.47279 * 270.02467 * 1 2 3 29 29 H 1.09001 * 109.46897 * 30.02843 * 1 2 3 30 30 H 1.09005 * 109.47155 * 150.02168 * 1 2 3 31 31 H 1.08006 * 124.52429 * 359.95141 * 3 2 1 32 32 H 1.09007 * 109.83160 * 351.58334 * 9 8 6 33 33 H 1.08997 * 109.83291 * 112.47289 * 9 8 6 34 34 H 1.09005 * 109.64150 * 61.59596 * 10 9 8 35 35 H 1.08991 * 109.64258 * 182.23290 * 10 9 8 36 36 H 1.09002 * 109.21278 * 184.10947 * 11 10 9 37 37 H 1.08999 * 109.21365 * 303.42265 * 11 10 9 38 38 H 1.08997 * 110.72157 * 85.28978 * 16 14 8 39 39 H 1.08999 * 110.80413 * 321.83028 * 16 14 8 40 40 H 1.09005 * 109.88579 * 262.30453 * 17 16 14 41 41 H 1.09003 * 110.01973 * 141.19892 * 17 16 14 42 42 H 0.96993 * 120.00075 * 179.97438 * 22 21 19 43 43 H 1.08002 * 123.35349 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0007 5 6 3.5937 -0.9428 0.0061 6 6 4.6231 -1.9863 0.0131 7 8 4.5225 -2.9352 0.7684 8 7 5.6808 -1.8949 -0.8171 9 6 5.8323 -0.7097 -1.6701 10 6 6.0317 -1.1978 -3.1113 11 6 7.2598 -2.1050 -3.1485 12 6 7.0358 -3.3581 -2.2995 13 1 6.2996 -4.0205 -2.7549 14 6 6.6587 -2.9666 -0.8522 15 1 6.2770 -3.8363 -0.3173 16 6 8.0139 -2.5263 -0.2706 17 6 9.0013 -3.5110 -0.9372 18 7 8.3506 -4.0260 -2.1522 19 6 8.8719 -4.9638 -3.0031 20 1 8.3114 -5.2753 -3.8721 21 6 10.1211 -5.5132 -2.7493 22 7 10.8045 -5.1332 -1.6905 23 14 10.8324 -6.7919 -3.9105 24 1 10.9671 -6.2068 -5.2687 25 1 12.1677 -7.2178 -3.4198 26 1 9.9276 -7.9683 -3.9657 27 6 2.2446 -1.1601 0.0006 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 1.8025 2.1232 -0.0008 32 1 4.9353 -0.0932 -1.6092 33 1 6.7000 -0.1326 -1.3507 34 1 5.1532 -1.7569 -3.4336 35 1 6.1875 -0.3430 -3.7693 36 1 7.4564 -2.4005 -4.1791 37 1 8.1207 -1.5594 -2.7623 38 1 8.0242 -2.6419 0.8132 39 1 8.2412 -1.4987 -0.5539 40 1 9.2203 -4.3340 -0.2569 41 1 9.9233 -2.9932 -1.2015 42 1 11.6772 -5.5174 -1.5130 43 1 1.8018 -2.1452 0.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049462070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:16 Heat of formation + Delta-G solvation = 31.490832 kcal Electronic energy + Delta-G solvation = -25278.508940 eV Core-core repulsion = 21837.137152 eV Total energy + Delta-G solvation = -3441.371788 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41315 -38.64057 -37.60102 -35.29881 -32.43270 -32.35548 -31.11680 -29.05238 -28.38030 -27.89083 -25.45901 -24.30700 -23.69844 -22.02079 -20.57631 -19.98650 -19.19508 -18.52557 -17.82996 -16.89429 -16.41331 -15.94412 -15.04023 -14.80172 -14.66519 -14.29050 -14.10321 -13.93080 -13.54774 -13.48143 -13.29808 -12.94997 -12.55516 -12.36303 -12.31581 -12.15041 -11.96798 -11.88238 -11.37624 -11.21918 -11.00243 -10.91713 -10.78733 -10.63405 -10.50813 -10.14294 -10.10897 -9.73131 -9.62661 -9.60743 -9.00457 -8.62134 -8.43844 -8.30708 -6.86139 -5.70678 -3.04969 0.46790 1.23678 1.72483 2.27458 2.94727 3.22618 3.41350 3.45756 3.46839 4.45441 4.49385 4.73889 4.89555 4.95763 5.09566 5.14236 5.27831 5.33108 5.35001 5.36226 5.48620 5.55960 5.61440 5.64305 5.68091 5.75246 5.85459 5.99512 6.10020 6.11368 6.19718 6.20981 6.30749 6.35500 6.50702 6.58277 6.72639 6.95114 7.04899 7.51520 7.55691 7.61829 7.82549 8.21530 8.26300 9.20722 9.80362 10.46273 11.40507 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.003170 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.784928 B = 8831.985051 C = 8881.596631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.112 4.112 3 C -0.256 4.256 4 S 0.215 5.785 5 C -0.247 4.247 6 C 0.582 3.418 7 O -0.528 6.528 8 N -0.583 5.583 9 C 0.093 3.907 10 C -0.130 4.130 11 C -0.130 4.130 12 C 0.156 3.844 13 H 0.061 0.939 14 C 0.132 3.868 15 H 0.103 0.897 16 C -0.151 4.151 17 C 0.181 3.819 18 N -0.598 5.598 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C -0.069 4.069 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.253 0.747 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.993 15.718 1.729 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.393 4.393 4 S 0.484 5.516 5 C -0.367 4.367 6 C 0.368 3.632 7 O -0.406 6.406 8 N -0.314 5.314 9 C -0.031 4.031 10 C -0.169 4.169 11 C -0.170 4.170 12 C 0.048 3.952 13 H 0.079 0.921 14 C 0.028 3.972 15 H 0.121 0.879 16 C -0.191 4.191 17 C 0.056 3.944 18 N -0.322 5.322 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.102 4.102 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.459 15.971 2.121 22.328 hybrid contribution -0.846 -1.331 -0.633 1.699 sum -16.305 14.641 1.488 21.964 Atomic orbital electron populations 1.20509 0.89580 1.02787 1.02365 1.18732 0.97790 0.91494 1.04488 1.25219 0.99483 1.03180 1.11399 1.83224 1.03245 0.97697 1.67441 1.24620 0.98082 0.97585 1.16458 1.17108 0.80675 0.84728 0.80677 1.90836 1.76813 1.33287 1.39631 1.47530 1.23522 1.20885 1.39487 1.22230 1.02285 0.87271 0.91282 1.21898 1.00130 1.00019 0.94819 1.22134 0.96287 0.97134 1.01488 1.21438 0.89630 0.92501 0.91676 0.92133 1.21810 0.87677 0.89120 0.98619 0.87925 1.23029 0.95726 1.00375 0.99946 1.21182 0.91977 0.93726 0.87527 1.44708 1.14379 1.46356 1.26803 1.18985 0.99684 1.13736 1.03151 0.90481 1.24795 0.97199 1.00198 0.98104 1.69943 1.13645 1.45777 1.27491 0.86200 0.78225 0.81351 0.79966 1.21217 1.21630 1.21165 1.20548 0.90788 0.99878 0.98940 0.91195 0.91588 0.91326 0.81702 0.89778 0.90817 0.91726 0.91146 0.92004 0.91774 0.91907 0.92209 0.92990 0.93943 0.93670 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.13 36.01 0.36 -0.27 16 2 C -0.11 -1.07 5.78 -106.45 -0.62 -1.68 16 3 C -0.26 -2.22 10.67 29.18 0.31 -1.91 16 4 S 0.21 2.11 19.88 -107.50 -2.14 -0.03 16 5 C -0.25 -3.27 5.41 -36.79 -0.20 -3.47 16 6 C 0.58 9.71 7.50 -12.90 -0.10 9.62 16 7 O -0.53 -10.73 16.43 5.19 0.09 -10.65 16 8 N -0.58 -9.36 2.74 -166.65 -0.46 -9.82 16 9 C 0.09 1.19 5.53 -3.64 -0.02 1.17 16 10 C -0.13 -1.72 6.11 -26.63 -0.16 -1.88 16 11 C -0.13 -2.26 5.10 -26.86 -0.14 -2.40 16 12 C 0.16 3.18 3.61 -66.14 -0.24 2.94 16 13 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 14 C 0.13 2.52 3.07 -67.35 -0.21 2.31 16 15 H 0.10 2.21 6.98 -51.93 -0.36 1.85 16 16 C -0.15 -2.94 6.06 -25.44 -0.15 -3.10 16 17 C 0.18 4.38 5.19 -2.88 -0.01 4.36 16 18 N -0.60 -14.93 2.91 -161.95 -0.47 -15.40 16 19 C -0.23 -6.24 10.29 -15.06 -0.15 -6.39 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -26.92 10.33 55.49 0.57 -26.35 16 23 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 C -0.07 -0.81 10.02 -40.44 -0.41 -1.22 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 0.44 8.13 -51.93 -0.42 0.01 16 31 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.08 0.92 4.01 -30.10 -0.12 0.80 16 33 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.18 7.12 -51.93 -0.37 0.81 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.06 6.81 -51.93 -0.35 0.71 16 40 H 0.05 1.41 7.30 -51.93 -0.38 1.03 16 41 H 0.04 1.12 7.59 -51.93 -0.39 0.73 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -31.63 347.83 -10.16 -41.79 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.14 Total: 0.35 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.83 Total: -2.19 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.35 Total: -51.57 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.14 Total: -0.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.63 -10.16 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049462070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.279 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds