Wall clock time and date at job start Tue Mar 31 2020 12:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33812 * 122.44939 * 2 1 4 4 S 1.70618 * 110.95380 * 179.97438 * 3 2 1 5 5 C 1.75830 * 91.56342 * 359.83257 * 4 3 2 6 6 C 1.46584 * 125.45719 * 180.18712 * 5 4 3 7 7 O 1.21695 * 119.99864 * 134.47073 * 6 5 4 8 8 N 1.34773 * 119.99818 * 314.46336 * 6 5 4 9 9 C 1.46805 * 119.57893 * 3.43444 * 8 6 5 10 10 C 1.53463 * 107.59508 * 232.06204 * 9 8 6 11 11 C 1.52734 * 108.43788 * 301.91661 * 10 9 8 12 12 C 1.53008 * 110.80967 * 63.76805 * 11 10 9 13 13 H 1.09000 * 111.38932 * 69.73055 * 12 11 10 14 14 C 1.45123 * 119.57784 * 183.16782 * 8 6 5 15 15 H 1.08997 * 109.96616 * 11.93482 * 14 8 6 16 16 C 1.53905 * 111.89440 * 248.66154 * 14 8 6 17 17 C 1.54567 * 102.54854 * 203.53985 * 16 14 8 18 18 N 1.47126 * 107.25551 * 21.71137 * 17 16 14 19 19 C 1.36939 * 125.76660 * 182.59796 * 18 17 16 20 20 H 1.08001 * 119.99787 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00075 * 359.97438 * 19 18 17 22 22 N 1.31624 * 120.00160 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99887 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47125 * 60.00092 * 23 21 19 25 25 H 1.48500 * 109.47039 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.47221 * 300.00079 * 23 21 19 27 27 C 1.36647 * 109.08268 * 0.28636 * 5 4 3 28 28 H 1.08997 * 109.47279 * 270.02467 * 1 2 3 29 29 H 1.09001 * 109.46897 * 30.02843 * 1 2 3 30 30 H 1.09005 * 109.47155 * 150.02168 * 1 2 3 31 31 H 1.08006 * 124.52429 * 359.95141 * 3 2 1 32 32 H 1.09007 * 109.83160 * 351.58334 * 9 8 6 33 33 H 1.08997 * 109.83291 * 112.47289 * 9 8 6 34 34 H 1.09005 * 109.64150 * 61.59596 * 10 9 8 35 35 H 1.08991 * 109.64258 * 182.23290 * 10 9 8 36 36 H 1.09002 * 109.21278 * 184.10947 * 11 10 9 37 37 H 1.08999 * 109.21365 * 303.42265 * 11 10 9 38 38 H 1.08997 * 110.72157 * 85.28978 * 16 14 8 39 39 H 1.08999 * 110.80413 * 321.83028 * 16 14 8 40 40 H 1.09005 * 109.88579 * 262.30453 * 17 16 14 41 41 H 1.09003 * 110.01973 * 141.19892 * 17 16 14 42 42 H 0.96993 * 120.00075 * 179.97438 * 22 21 19 43 43 H 1.08002 * 123.35349 * 179.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7892 0.0007 5 6 3.5937 -0.9428 0.0061 6 6 4.6231 -1.9863 0.0131 7 8 4.5225 -2.9352 0.7684 8 7 5.6808 -1.8949 -0.8171 9 6 5.8323 -0.7097 -1.6701 10 6 6.0317 -1.1978 -3.1113 11 6 7.2598 -2.1050 -3.1485 12 6 7.0358 -3.3581 -2.2995 13 1 6.2996 -4.0205 -2.7549 14 6 6.6587 -2.9666 -0.8522 15 1 6.2770 -3.8363 -0.3173 16 6 8.0139 -2.5263 -0.2706 17 6 9.0013 -3.5110 -0.9372 18 7 8.3506 -4.0260 -2.1522 19 6 8.8719 -4.9638 -3.0031 20 1 8.3114 -5.2753 -3.8721 21 6 10.1211 -5.5132 -2.7493 22 7 10.8045 -5.1332 -1.6905 23 14 10.8324 -6.7919 -3.9105 24 1 10.9671 -6.2068 -5.2687 25 1 12.1677 -7.2178 -3.4198 26 1 9.9276 -7.9683 -3.9657 27 6 2.2446 -1.1601 0.0006 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 1.8025 2.1232 -0.0008 32 1 4.9353 -0.0932 -1.6092 33 1 6.7000 -0.1326 -1.3507 34 1 5.1532 -1.7569 -3.4336 35 1 6.1875 -0.3430 -3.7693 36 1 7.4564 -2.4005 -4.1791 37 1 8.1207 -1.5594 -2.7623 38 1 8.0242 -2.6419 0.8132 39 1 8.2412 -1.4987 -0.5539 40 1 9.2203 -4.3340 -0.2569 41 1 9.9233 -2.9932 -1.2015 42 1 11.6772 -5.5174 -1.5130 43 1 1.8018 -2.1452 0.0021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049462070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:15 Heat of formation + Delta-G solvation = 13.186170 kcal Electronic energy + Delta-G solvation = -25279.302690 eV Core-core repulsion = 21837.137152 eV Total energy + Delta-G solvation = -3442.165538 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78471 -39.81232 -38.76463 -36.85601 -34.25521 -33.80074 -32.11301 -30.80644 -29.86390 -28.64494 -26.87422 -26.03886 -24.92677 -23.36005 -22.04227 -21.58779 -20.02617 -19.81111 -19.06510 -18.77549 -17.60626 -17.00985 -16.79466 -16.32602 -15.97959 -15.86205 -15.25258 -15.03529 -14.80186 -14.65651 -14.34700 -14.11567 -14.00897 -13.80753 -13.62646 -13.21242 -13.04652 -12.92602 -12.81598 -12.73309 -12.62573 -12.40077 -12.34365 -12.11910 -12.01841 -11.82980 -11.63477 -11.54023 -11.23870 -11.08802 -10.71185 -9.91570 -9.65749 -9.18526 -8.90951 -7.84490 -5.20663 -0.39273 0.38103 0.96613 1.41450 1.45220 1.48697 1.54673 1.72913 2.02664 2.49495 3.31786 3.39372 3.52601 3.84021 3.88338 3.98556 4.04047 4.08316 4.10753 4.23781 4.32281 4.42608 4.50573 4.52855 4.62421 4.71336 4.72650 4.79363 4.88627 4.92442 4.93151 5.03017 5.08267 5.15775 5.31313 5.38400 5.43183 5.50476 5.51734 5.56280 5.62257 5.72427 6.17020 6.26551 6.95523 7.08178 7.73970 8.39625 9.25467 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.003170 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.784928 B = 8831.985051 C = 8881.596631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.125 4.125 3 C -0.236 4.236 4 S 0.254 5.746 5 C -0.291 4.291 6 C 0.581 3.419 7 O -0.579 6.579 8 N -0.582 5.582 9 C 0.089 3.911 10 C -0.119 4.119 11 C -0.119 4.119 12 C 0.152 3.848 13 H 0.050 0.950 14 C 0.146 3.854 15 H 0.070 0.930 16 C -0.133 4.133 17 C 0.193 3.807 18 N -0.618 5.618 19 C -0.238 4.238 20 H 0.082 0.918 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.978 3.022 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.280 1.280 27 C -0.066 4.066 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.199 0.801 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.010 0.990 41 H 0.015 0.985 42 H 0.247 0.753 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.214 19.024 0.566 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.138 4.138 3 C -0.373 4.373 4 S 0.523 5.477 5 C -0.411 4.411 6 C 0.370 3.630 7 O -0.460 6.460 8 N -0.312 5.312 9 C -0.032 4.032 10 C -0.158 4.158 11 C -0.159 4.159 12 C 0.045 3.955 13 H 0.068 0.932 14 C 0.041 3.959 15 H 0.088 0.912 16 C -0.173 4.173 17 C 0.068 3.932 18 N -0.343 5.343 19 C -0.366 4.366 20 H 0.100 0.900 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.806 3.194 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.206 1.206 27 C -0.100 4.100 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.216 0.784 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.029 0.971 41 H 0.033 0.967 42 H 0.056 0.944 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.722 19.329 0.925 26.240 hybrid contribution -0.268 -2.308 -0.250 2.337 sum -17.990 17.020 0.675 24.775 Atomic orbital electron populations 1.20568 0.87654 1.03813 1.03080 1.18918 0.99184 0.90747 1.04914 1.25669 0.98768 1.04408 1.08474 1.83008 1.03946 0.94112 1.66617 1.24327 0.97441 0.99045 1.20276 1.17615 0.80941 0.84866 0.79583 1.90799 1.77929 1.35656 1.41605 1.47520 1.22747 1.20924 1.40014 1.22538 1.04245 0.86205 0.90259 1.21861 0.97723 1.00322 0.95881 1.21913 0.98170 0.96032 0.99781 1.21628 0.87341 0.93515 0.93040 0.93169 1.21305 0.88093 0.89424 0.97117 0.91211 1.22839 0.94461 1.00248 0.99714 1.20851 0.92396 0.93034 0.86965 1.44953 1.16082 1.46569 1.26677 1.19364 0.99845 1.13965 1.03470 0.90030 1.25631 0.97818 1.02504 0.99845 1.70165 1.13605 1.47043 1.29227 0.85158 0.76967 0.78913 0.78314 1.20015 1.22140 1.20638 1.20741 0.90674 1.00719 0.97873 0.90605 0.89685 0.91272 0.78354 0.87228 0.89369 0.91546 0.87416 0.92908 0.92680 0.91488 0.89688 0.97140 0.96666 0.94402 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 10.13 71.24 0.72 -0.23 16 2 C -0.13 -1.99 5.78 -21.05 -0.12 -2.11 16 3 C -0.24 -3.02 10.67 66.81 0.71 -2.31 16 4 S 0.25 4.06 19.88 -56.49 -1.12 2.94 16 5 C -0.29 -7.26 5.41 24.08 0.13 -7.13 16 6 C 0.58 19.44 7.50 86.42 0.65 20.09 16 7 O -0.58 -24.55 16.43 -4.33 -0.07 -24.62 16 8 N -0.58 -18.33 2.74 -799.37 -2.19 -20.52 16 9 C 0.09 2.04 5.53 86.48 0.48 2.52 16 10 C -0.12 -2.79 6.11 30.66 0.19 -2.60 16 11 C -0.12 -4.02 5.10 30.51 0.16 -3.86 16 12 C 0.15 6.32 3.61 45.21 0.16 6.49 16 13 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 14 C 0.15 5.73 3.07 46.10 0.14 5.87 16 15 H 0.07 3.20 6.98 -2.39 -0.02 3.19 16 16 C -0.13 -5.30 6.06 31.43 0.19 -5.11 16 17 C 0.19 9.84 5.19 86.79 0.45 10.29 16 18 N -0.62 -32.10 2.91 -666.29 -1.94 -34.04 16 19 C -0.24 -13.44 10.29 84.03 0.86 -12.57 16 20 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 22 N -0.95 -58.11 10.33 21.65 0.22 -57.89 16 23 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 C -0.07 -1.47 10.02 21.72 0.22 -1.25 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 30 H 0.07 0.71 8.13 -2.38 -0.02 0.69 16 31 H 0.20 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.11 1.99 4.01 -16.26 -0.07 1.92 16 33 H 0.09 1.82 7.53 -2.39 -0.02 1.80 16 34 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.96 7.12 -2.39 -0.02 1.95 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.08 2.94 6.81 -2.39 -0.02 2.93 16 40 H 0.01 0.60 7.30 -2.38 -0.02 0.59 16 41 H 0.02 0.84 7.59 -2.39 -0.02 0.83 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -73.74 347.83 3.29 -70.45 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.96 Total: 10.41 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.41 Total: 4.80 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -3.90 Total: -112.44 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.07 Total: -24.62 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.12 Total: 2.94 kcal Total: -73.74 3.29 -70.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049462070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.636 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds