Wall clock time and date at job start Tue Mar 31 2020 12:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33811 * 122.45334 * 2 1 4 4 S 1.70615 * 110.95908 * 180.02562 * 3 2 1 5 5 C 1.75827 * 91.56179 * 359.97438 * 4 3 2 6 6 C 1.46589 * 125.45711 * 179.97438 * 5 4 3 7 7 O 1.21698 * 119.99639 * 138.44837 * 6 5 4 8 8 N 1.34778 * 119.99786 * 318.44204 * 6 5 4 9 9 C 1.47850 * 122.22917 * 4.24651 * 8 6 5 10 10 C 1.52625 * 111.57138 * 231.59740 * 9 8 6 11 11 C 1.53870 * 111.91215 * 312.84194 * 10 9 8 12 12 C 1.51093 * 107.34264 * 55.96582 * 11 10 9 13 13 H 1.09003 * 108.73709 * 51.46936 * 12 11 10 14 14 C 1.45728 * 122.22482 * 184.53046 * 8 6 5 15 15 H 1.09003 * 111.06361 * 240.52273 * 14 8 6 16 16 C 1.53427 * 116.38023 * 9.88883 * 14 8 6 17 17 C 1.55463 * 101.67426 * 152.73803 * 16 14 8 18 18 N 1.45018 * 118.75916 * 176.40145 * 12 11 10 19 19 C 1.36937 * 126.56037 * 330.92271 * 18 12 11 20 20 H 1.07993 * 120.00072 * 7.25111 * 19 18 12 21 21 C 1.38816 * 119.99727 * 187.24460 * 19 18 12 22 22 N 1.31616 * 120.00250 * 354.11787 * 21 19 18 23 23 Si 1.86803 * 119.99755 * 174.12224 * 21 19 18 24 24 H 1.48501 * 109.47186 * 94.98512 * 23 21 19 25 25 H 1.48505 * 109.47040 * 214.98243 * 23 21 19 26 26 H 1.48503 * 109.47153 * 334.98446 * 23 21 19 27 27 C 1.36651 * 109.08559 * 0.02562 * 5 4 3 28 28 H 1.09003 * 109.46839 * 89.97477 * 1 2 3 29 29 H 1.08998 * 109.47225 * 209.97640 * 1 2 3 30 30 H 1.08997 * 109.46847 * 329.97582 * 1 2 3 31 31 H 1.08007 * 124.51982 * 359.76047 * 3 2 1 32 32 H 1.08997 * 109.16242 * 352.88211 * 9 8 6 33 33 H 1.09001 * 109.16110 * 112.07833 * 9 8 6 34 34 H 1.09002 * 109.64109 * 191.68572 * 10 9 8 35 35 H 1.08998 * 108.05041 * 72.93854 * 10 9 8 36 36 H 1.08993 * 109.88321 * 296.50653 * 11 10 9 37 37 H 1.09006 * 109.88379 * 175.41924 * 11 10 9 38 38 H 1.09007 * 110.98483 * 270.83138 * 16 14 8 39 39 H 1.09001 * 110.98998 * 34.63668 * 16 14 8 40 40 H 1.08999 * 109.96390 * 218.01967 * 17 16 14 41 41 H 1.08997 * 109.96305 * 96.77701 * 17 16 14 42 42 H 0.97002 * 120.00387 * 180.02562 * 22 21 19 43 43 H 1.07996 * 123.34935 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1291 0.0000 4 16 3.8970 0.7892 -0.0007 5 6 3.5937 -0.9428 -0.0002 6 6 4.6231 -1.9863 -0.0010 7 8 4.4895 -2.9733 0.6983 8 7 5.7175 -1.8527 -0.7764 9 6 5.9747 -0.6348 -1.5741 10 6 6.2691 -0.9716 -3.0333 11 6 7.2928 -2.1129 -3.1640 12 6 6.7511 -3.2942 -2.3931 13 1 5.7291 -3.4866 -2.7198 14 6 6.7229 -2.9016 -0.8889 15 1 7.6973 -2.5480 -0.5518 16 6 6.3648 -4.2585 -0.2687 17 6 7.2107 -5.2335 -1.1353 18 7 7.4902 -4.5416 -2.4179 19 6 8.2921 -4.9947 -3.4312 20 1 8.5153 -4.3534 -4.2710 21 6 8.8182 -6.2782 -3.3789 22 7 8.6429 -7.0180 -2.3045 23 14 9.7749 -6.9554 -4.8334 24 1 11.2272 -6.7330 -4.6174 25 1 9.5113 -8.4110 -4.9649 26 1 9.3469 -6.2607 -6.0742 27 6 2.2446 -1.1601 -0.0001 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 1.8025 2.1232 -0.0037 32 1 5.1050 0.0198 -1.5182 33 1 6.8401 -0.1145 -1.1637 34 1 6.6539 -0.0881 -3.5428 35 1 5.3346 -1.2756 -3.5049 36 1 8.2493 -1.8029 -2.7434 37 1 7.4175 -2.3808 -4.2132 38 1 6.6686 -4.3021 0.7772 39 1 5.3000 -4.4668 -0.3733 40 1 6.6491 -6.1490 -1.3210 41 1 8.1461 -5.4670 -0.6269 42 1 9.0109 -7.9148 -2.2678 43 1 1.8019 -2.1452 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049462071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:19 Heat of formation + Delta-G solvation = 36.919337 kcal Electronic energy + Delta-G solvation = -25380.413971 eV Core-core repulsion = 21939.277580 eV Total energy + Delta-G solvation = -3441.136391 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.37402 -38.58207 -37.42762 -35.44793 -32.64611 -32.31661 -31.06812 -28.96834 -28.33547 -27.88994 -25.44270 -24.49155 -23.42301 -21.54986 -20.95431 -19.83390 -19.32965 -19.06687 -17.59756 -16.56000 -16.08401 -15.67105 -15.23100 -15.00499 -14.63182 -14.36182 -14.04963 -13.96179 -13.52787 -13.44217 -13.28491 -12.91179 -12.51622 -12.36659 -12.27791 -12.19297 -12.08011 -11.80678 -11.59396 -11.28821 -10.97010 -10.82953 -10.64998 -10.52769 -10.46571 -10.10092 -10.02749 -9.85637 -9.58994 -9.24622 -8.93510 -8.56172 -8.42873 -8.25828 -6.80662 -5.70301 -3.03716 0.48759 1.27790 1.73970 2.30167 2.97222 3.28099 3.40910 3.46393 3.48578 4.46072 4.50873 4.76173 4.82904 4.95574 5.04792 5.12502 5.26661 5.36199 5.36809 5.37683 5.44626 5.55538 5.62876 5.67538 5.76807 5.78499 5.85205 5.98676 6.07416 6.14845 6.24255 6.24811 6.29438 6.38831 6.55338 6.71386 6.77397 6.88788 7.16145 7.58717 7.60292 7.69600 7.84452 8.25545 8.31953 9.20127 9.84197 10.53033 11.42581 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.003395 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.785972 B = 8246.048156 C = 8667.402797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.111 4.111 3 C -0.257 4.257 4 S 0.208 5.792 5 C -0.246 4.246 6 C 0.588 3.412 7 O -0.517 6.517 8 N -0.591 5.591 9 C 0.098 3.902 10 C -0.127 4.127 11 C -0.116 4.116 12 C 0.159 3.841 13 H 0.019 0.981 14 C 0.117 3.883 15 H 0.083 0.917 16 C -0.128 4.128 17 C 0.173 3.827 18 N -0.592 5.592 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 C -0.068 4.068 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.165 0.835 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.253 0.747 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.171 19.231 3.673 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.394 4.394 4 S 0.477 5.523 5 C -0.367 4.367 6 C 0.374 3.626 7 O -0.394 6.394 8 N -0.324 5.324 9 C -0.026 4.026 10 C -0.166 4.166 11 C -0.155 4.155 12 C 0.049 3.951 13 H 0.036 0.964 14 C 0.013 3.987 15 H 0.101 0.899 16 C -0.167 4.167 17 C 0.048 3.952 18 N -0.317 5.317 19 C -0.356 4.356 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.564 5.564 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.101 4.101 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.182 0.818 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.812 19.402 4.009 22.570 hybrid contribution -0.819 -1.090 -0.813 1.587 sum -11.631 18.312 3.196 21.928 Atomic orbital electron populations 1.20512 0.89595 1.02793 1.02374 1.18743 0.97793 0.91516 1.04378 1.25226 0.99545 1.03130 1.11476 1.83114 1.03351 0.98091 1.67742 1.24726 0.98193 0.97395 1.16362 1.16947 0.80412 0.85097 0.80105 1.90853 1.77268 1.30213 1.41109 1.47887 1.21852 1.18524 1.44120 1.22032 1.01629 0.86453 0.92443 1.21856 1.00383 0.99574 0.94812 1.21446 0.97856 0.94486 1.01672 1.20761 0.95015 0.87532 0.91754 0.96385 1.22471 0.89458 0.87486 0.99279 0.89943 1.22933 1.01711 0.93019 0.99008 1.21734 0.96822 0.92470 0.84129 1.44085 1.53939 1.16520 1.17166 1.18979 1.22091 0.96492 0.98068 0.90345 1.24828 1.01051 0.96658 0.97688 1.69956 1.49584 1.10156 1.26738 0.86156 0.79476 0.78426 0.82026 1.21714 1.21662 1.20656 1.20576 0.90866 0.99906 0.98709 0.91175 0.91286 0.91621 0.81773 0.89959 0.91267 0.90574 0.91896 0.91698 0.91241 0.91841 0.90340 0.93732 0.93119 0.93708 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.13 36.00 0.36 -0.32 16 2 C -0.11 -1.11 5.78 -106.46 -0.62 -1.72 16 3 C -0.26 -2.30 10.67 29.18 0.31 -1.99 16 4 S 0.21 2.06 19.71 -107.50 -2.12 -0.06 16 5 C -0.25 -3.34 5.67 -36.79 -0.21 -3.55 16 6 C 0.59 9.99 7.50 -12.89 -0.10 9.90 16 7 O -0.52 -10.47 14.03 5.19 0.07 -10.39 16 8 N -0.59 -9.65 2.92 -165.61 -0.48 -10.13 16 9 C 0.10 1.23 5.87 -3.49 -0.02 1.21 16 10 C -0.13 -1.64 5.92 -26.47 -0.16 -1.80 16 11 C -0.12 -1.98 5.41 -27.24 -0.15 -2.12 16 12 C 0.16 3.33 2.58 -68.36 -0.18 3.15 16 13 H 0.02 0.42 8.05 -51.93 -0.42 0.01 16 14 C 0.12 2.25 3.32 -66.80 -0.22 2.03 16 15 H 0.08 1.59 8.13 -51.93 -0.42 1.16 16 16 C -0.13 -2.76 4.94 -25.20 -0.12 -2.88 16 17 C 0.17 4.39 5.45 -1.69 -0.01 4.38 16 18 N -0.59 -15.21 3.35 -163.28 -0.55 -15.76 16 19 C -0.23 -6.29 9.94 -15.06 -0.15 -6.44 16 20 H 0.08 2.07 7.25 -52.49 -0.38 1.68 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 22 N -0.92 -27.23 10.52 55.49 0.58 -26.65 16 23 Si 0.91 22.09 29.56 -169.99 -5.02 17.07 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C -0.07 -0.84 10.00 -40.43 -0.40 -1.25 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.08 0.89 3.98 -28.81 -0.11 0.78 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 37 H 0.07 1.23 7.69 -51.93 -0.40 0.83 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.77 6.35 -51.93 -0.33 1.44 16 40 H 0.04 1.25 7.62 -51.93 -0.40 0.85 16 41 H 0.05 1.39 7.45 -51.93 -0.39 1.00 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -32.23 346.09 -10.26 -42.49 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.21 Total: -0.13 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.75 Total: -1.65 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.45 Total: -52.53 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.12 Total: -0.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.23 -10.26 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049462071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.411 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds