Wall clock time and date at job start Tue Mar 31 2020 12:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33811 * 122.45334 * 2 1 4 4 S 1.70615 * 110.95908 * 180.02562 * 3 2 1 5 5 C 1.75827 * 91.56179 * 359.97438 * 4 3 2 6 6 C 1.46589 * 125.45711 * 179.97438 * 5 4 3 7 7 O 1.21698 * 119.99639 * 138.44837 * 6 5 4 8 8 N 1.34778 * 119.99786 * 318.44204 * 6 5 4 9 9 C 1.47850 * 122.22917 * 4.24651 * 8 6 5 10 10 C 1.52625 * 111.57138 * 231.59740 * 9 8 6 11 11 C 1.53870 * 111.91215 * 312.84194 * 10 9 8 12 12 C 1.51093 * 107.34264 * 55.96582 * 11 10 9 13 13 H 1.09003 * 108.73709 * 51.46936 * 12 11 10 14 14 C 1.45728 * 122.22482 * 184.53046 * 8 6 5 15 15 H 1.09003 * 111.06361 * 240.52273 * 14 8 6 16 16 C 1.53427 * 116.38023 * 9.88883 * 14 8 6 17 17 C 1.55463 * 101.67426 * 152.73803 * 16 14 8 18 18 N 1.45018 * 118.75916 * 176.40145 * 12 11 10 19 19 C 1.36937 * 126.56037 * 330.92271 * 18 12 11 20 20 H 1.07993 * 120.00072 * 7.25111 * 19 18 12 21 21 C 1.38816 * 119.99727 * 187.24460 * 19 18 12 22 22 N 1.31616 * 120.00250 * 354.11787 * 21 19 18 23 23 Si 1.86803 * 119.99755 * 174.12224 * 21 19 18 24 24 H 1.48501 * 109.47186 * 94.98512 * 23 21 19 25 25 H 1.48505 * 109.47040 * 214.98243 * 23 21 19 26 26 H 1.48503 * 109.47153 * 334.98446 * 23 21 19 27 27 C 1.36651 * 109.08559 * 0.02562 * 5 4 3 28 28 H 1.09003 * 109.46839 * 89.97477 * 1 2 3 29 29 H 1.08998 * 109.47225 * 209.97640 * 1 2 3 30 30 H 1.08997 * 109.46847 * 329.97582 * 1 2 3 31 31 H 1.08007 * 124.51982 * 359.76047 * 3 2 1 32 32 H 1.08997 * 109.16242 * 352.88211 * 9 8 6 33 33 H 1.09001 * 109.16110 * 112.07833 * 9 8 6 34 34 H 1.09002 * 109.64109 * 191.68572 * 10 9 8 35 35 H 1.08998 * 108.05041 * 72.93854 * 10 9 8 36 36 H 1.08993 * 109.88321 * 296.50653 * 11 10 9 37 37 H 1.09006 * 109.88379 * 175.41924 * 11 10 9 38 38 H 1.09007 * 110.98483 * 270.83138 * 16 14 8 39 39 H 1.09001 * 110.98998 * 34.63668 * 16 14 8 40 40 H 1.08999 * 109.96390 * 218.01967 * 17 16 14 41 41 H 1.08997 * 109.96305 * 96.77701 * 17 16 14 42 42 H 0.97002 * 120.00387 * 180.02562 * 22 21 19 43 43 H 1.07996 * 123.34935 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1291 0.0000 4 16 3.8970 0.7892 -0.0007 5 6 3.5937 -0.9428 -0.0002 6 6 4.6231 -1.9863 -0.0010 7 8 4.4895 -2.9733 0.6983 8 7 5.7175 -1.8527 -0.7764 9 6 5.9747 -0.6348 -1.5741 10 6 6.2691 -0.9716 -3.0333 11 6 7.2928 -2.1129 -3.1640 12 6 6.7511 -3.2942 -2.3931 13 1 5.7291 -3.4866 -2.7198 14 6 6.7229 -2.9016 -0.8889 15 1 7.6973 -2.5480 -0.5518 16 6 6.3648 -4.2585 -0.2687 17 6 7.2107 -5.2335 -1.1353 18 7 7.4902 -4.5416 -2.4179 19 6 8.2921 -4.9947 -3.4312 20 1 8.5153 -4.3534 -4.2710 21 6 8.8182 -6.2782 -3.3789 22 7 8.6429 -7.0180 -2.3045 23 14 9.7749 -6.9554 -4.8334 24 1 11.2272 -6.7330 -4.6174 25 1 9.5113 -8.4110 -4.9649 26 1 9.3469 -6.2607 -6.0742 27 6 2.2446 -1.1601 -0.0001 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 1.8025 2.1232 -0.0037 32 1 5.1050 0.0198 -1.5182 33 1 6.8401 -0.1145 -1.1637 34 1 6.6539 -0.0881 -3.5428 35 1 5.3346 -1.2756 -3.5049 36 1 8.2493 -1.8029 -2.7434 37 1 7.4175 -2.3808 -4.2132 38 1 6.6686 -4.3021 0.7772 39 1 5.3000 -4.4668 -0.3733 40 1 6.6491 -6.1490 -1.3210 41 1 8.1461 -5.4670 -0.6269 42 1 9.0109 -7.9148 -2.2678 43 1 1.8019 -2.1452 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049462071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:19 Heat of formation + Delta-G solvation = 17.586803 kcal Electronic energy + Delta-G solvation = -25381.252292 eV Core-core repulsion = 21939.277580 eV Total energy + Delta-G solvation = -3441.974712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77424 -39.70493 -38.67350 -37.00525 -34.33980 -33.94351 -32.11976 -30.72150 -29.81816 -28.65084 -26.79906 -26.32820 -24.67177 -22.93024 -22.50182 -21.53236 -20.55848 -19.95059 -18.89258 -18.25315 -17.35452 -16.93086 -16.87424 -16.33608 -16.13365 -15.75631 -15.48892 -15.06944 -14.86736 -14.63864 -14.36383 -14.14428 -14.01418 -13.88895 -13.44233 -13.26396 -13.13733 -13.02566 -12.86049 -12.76568 -12.67807 -12.37259 -12.15623 -12.05115 -11.81220 -11.76302 -11.71648 -11.54837 -11.49612 -10.79831 -10.62067 -9.87092 -9.61133 -9.19319 -8.91858 -7.86317 -5.22618 -0.40142 0.41017 0.95505 1.41551 1.45774 1.48212 1.57214 1.73653 2.08613 2.49866 3.26793 3.33399 3.51212 3.85173 3.92529 3.99768 4.00663 4.09962 4.18131 4.23354 4.29704 4.42073 4.50459 4.53286 4.59832 4.69568 4.71428 4.82495 4.87742 4.93117 4.98290 5.06583 5.08149 5.10395 5.25674 5.37246 5.42216 5.47833 5.50797 5.55278 5.56887 5.68258 6.16145 6.34859 7.01668 7.03965 7.73857 8.44586 9.26615 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.003395 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.785972 B = 8246.048156 C = 8667.402797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.126 4.126 3 C -0.239 4.239 4 S 0.260 5.740 5 C -0.291 4.291 6 C 0.584 3.416 7 O -0.565 6.565 8 N -0.593 5.593 9 C 0.092 3.908 10 C -0.118 4.118 11 C -0.111 4.111 12 C 0.154 3.846 13 H -0.003 1.003 14 C 0.132 3.868 15 H 0.088 0.912 16 C -0.112 4.112 17 C 0.185 3.815 18 N -0.611 5.611 19 C -0.235 4.235 20 H 0.091 0.909 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.265 1.265 27 C -0.070 4.070 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.200 0.800 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.004 0.996 41 H 0.022 0.978 42 H 0.246 0.754 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 23.716 2.563 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C -0.376 4.376 4 S 0.529 5.471 5 C -0.411 4.411 6 C 0.372 3.628 7 O -0.446 6.446 8 N -0.325 5.325 9 C -0.030 4.030 10 C -0.156 4.156 11 C -0.150 4.150 12 C 0.046 3.954 13 H 0.014 0.986 14 C 0.027 3.973 15 H 0.106 0.894 16 C -0.150 4.150 17 C 0.059 3.941 18 N -0.336 5.336 19 C -0.363 4.363 20 H 0.109 0.891 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.807 3.193 24 H -0.212 1.212 25 H -0.225 1.225 26 H -0.189 1.189 27 C -0.104 4.104 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.217 0.783 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.023 0.977 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.492 23.966 2.870 26.733 hybrid contribution -0.706 -2.413 -0.439 2.552 sum -12.198 21.553 2.430 24.884 Atomic orbital electron populations 1.20565 0.87772 1.03641 1.03161 1.18909 0.99154 0.90797 1.05009 1.25692 0.99059 1.04309 1.08500 1.82806 1.03706 0.94021 1.66551 1.24448 0.97480 0.99244 1.19925 1.17464 0.80774 0.85339 0.79197 1.90811 1.78268 1.32475 1.43061 1.47950 1.21098 1.18799 1.44606 1.22376 1.03736 0.85109 0.91764 1.21844 0.98950 0.99386 0.95447 1.21419 0.99278 0.93972 1.00286 1.20929 0.93415 0.87286 0.93811 0.98579 1.22091 0.90615 0.87293 0.97346 0.89375 1.22652 0.99887 0.94045 0.98450 1.21413 0.95350 0.92291 0.85019 1.44342 1.53943 1.18497 1.16792 1.19429 1.21473 0.96786 0.98638 0.89084 1.25739 1.02845 0.97186 1.00366 1.70185 1.51138 1.10109 1.28811 0.85052 0.78018 0.77015 0.79192 1.21171 1.22505 1.18923 1.20737 0.90951 1.00597 0.98124 0.90382 0.91592 0.89709 0.78326 0.87769 0.88776 0.86276 0.92342 0.91196 0.92043 0.91517 0.91697 0.97736 0.95956 0.94437 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 10.13 71.24 0.72 -0.37 16 2 C -0.13 -2.18 5.78 -21.05 -0.12 -2.30 16 3 C -0.24 -3.23 10.67 66.81 0.71 -2.51 16 4 S 0.26 4.17 19.71 -56.49 -1.11 3.06 16 5 C -0.29 -7.57 5.67 24.08 0.14 -7.44 16 6 C 0.58 19.99 7.50 86.42 0.65 20.64 16 7 O -0.57 -23.99 14.03 -4.34 -0.06 -24.05 16 8 N -0.59 -18.92 2.92 -796.09 -2.33 -21.24 16 9 C 0.09 2.02 5.87 86.00 0.50 2.52 16 10 C -0.12 -2.64 5.92 30.76 0.18 -2.46 16 11 C -0.11 -3.61 5.41 30.27 0.16 -3.44 16 12 C 0.15 6.55 2.58 45.51 0.12 6.67 16 13 H 0.00 -0.15 8.05 -2.39 -0.02 -0.17 16 14 C 0.13 5.14 3.32 46.14 0.15 5.29 16 15 H 0.09 3.36 8.13 -2.39 -0.02 3.34 16 16 C -0.11 -5.11 4.94 31.59 0.16 -4.95 16 17 C 0.18 10.04 5.45 86.86 0.47 10.51 16 18 N -0.61 -32.60 3.35 -670.50 -2.25 -34.85 16 19 C -0.23 -13.21 9.94 84.03 0.84 -12.37 16 20 H 0.09 4.78 7.25 -2.91 -0.02 4.75 16 21 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 22 N -0.95 -59.45 10.52 21.65 0.23 -59.22 16 23 Si 0.98 46.30 29.56 68.60 2.03 48.33 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 27 C -0.07 -1.68 10.00 21.72 0.22 -1.47 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.81 8.13 -2.39 -0.02 0.80 16 30 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 31 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.10 1.85 3.98 -17.09 -0.07 1.79 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 37 H 0.06 2.09 7.69 -2.38 -0.02 2.07 16 38 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 39 H 0.06 3.15 6.35 -2.39 -0.02 3.13 16 40 H 0.00 0.27 7.62 -2.39 -0.02 0.25 16 41 H 0.02 1.31 7.45 -2.39 -0.02 1.30 16 42 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -75.58 346.09 2.82 -72.76 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.95 Total: 10.43 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 5.37 Total: 4.80 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -4.35 Total: -115.32 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.11 Total: 3.06 kcal Total: -75.58 2.82 -72.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049462071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.342 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds