Wall clock time and date at job start Tue Mar 31 2020 12:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33814 * 122.44446 * 2 1 4 4 S 1.70619 * 110.95332 * 179.74823 * 3 2 1 5 5 C 1.75837 * 91.56278 * 0.35351 * 4 3 2 6 6 C 1.46580 * 125.45808 * 179.91177 * 5 4 3 7 7 O 1.21705 * 119.99622 * 222.98755 * 6 5 4 8 8 N 1.34775 * 120.00166 * 42.99794 * 6 5 4 9 9 C 1.47856 * 122.22279 * 355.45038 * 8 6 5 10 10 C 1.52719 * 111.05856 * 127.49568 * 9 8 6 11 11 C 1.53871 * 111.52289 * 48.53061 * 10 9 8 12 12 C 1.51345 * 107.27125 * 302.85889 * 11 10 9 13 13 H 1.08997 * 108.79073 * 308.76775 * 12 11 10 14 14 C 1.45723 * 122.22988 * 175.42802 * 8 6 5 15 15 H 1.09005 * 111.07235 * 118.61372 * 14 8 6 16 16 C 1.53434 * 116.36445 * 350.11813 * 14 8 6 17 17 C 1.55469 * 101.67070 * 207.27598 * 16 14 8 18 18 N 1.45025 * 119.01895 * 183.59429 * 12 11 10 19 19 C 1.36934 * 126.56204 * 29.31982 * 18 12 11 20 20 H 1.07995 * 119.99975 * 359.70968 * 19 18 12 21 21 C 1.38817 * 119.99962 * 179.70958 * 19 18 12 22 22 N 1.31612 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99836 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47079 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47165 * 300.00150 * 23 21 19 26 26 H 1.48509 * 109.47241 * 60.00401 * 23 21 19 27 27 C 1.36654 * 109.07894 * 359.65438 * 5 4 3 28 28 H 1.09001 * 109.47006 * 269.97212 * 1 2 3 29 29 H 1.09000 * 109.47465 * 29.97938 * 1 2 3 30 30 H 1.09003 * 109.46840 * 149.97336 * 1 2 3 31 31 H 1.08003 * 124.52791 * 0.05652 * 3 2 1 32 32 H 1.08996 * 109.16023 * 247.90038 * 9 8 6 33 33 H 1.09001 * 109.16145 * 7.14427 * 9 8 6 34 34 H 1.08996 * 109.07183 * 169.05956 * 10 9 8 35 35 H 1.08999 * 109.07025 * 288.07627 * 10 9 8 36 36 H 1.09005 * 109.88084 * 62.52948 * 11 10 9 37 37 H 1.09002 * 109.88573 * 183.53876 * 11 10 9 38 38 H 1.08996 * 110.99090 * 89.18244 * 16 14 8 39 39 H 1.09008 * 111.01944 * 325.38626 * 16 14 8 40 40 H 1.08999 * 109.96023 * 263.21870 * 17 16 14 41 41 H 1.09003 * 109.95961 * 141.97707 * 17 16 14 42 42 H 0.97003 * 120.00365 * 180.02562 * 22 21 19 43 43 H 1.08002 * 123.35029 * 180.24597 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 16 3.8969 0.7894 0.0070 5 6 3.5938 -0.9427 -0.0009 6 6 4.6233 -1.9861 -0.0015 7 8 4.5042 -2.9579 -0.7244 8 7 5.7015 -1.8694 0.7986 9 6 5.9454 -0.6661 1.6225 10 6 6.1848 -1.0407 3.0835 11 6 7.2149 -2.1763 3.2137 12 6 6.6962 -3.3479 2.4082 13 1 5.6680 -3.5516 2.7069 14 6 6.7042 -2.9209 0.9098 15 1 7.6825 -2.5655 0.5858 16 6 6.3584 -4.2643 0.2539 17 6 7.1858 -5.2579 1.1172 18 7 7.4392 -4.5933 2.4195 19 6 8.2201 -5.0681 3.4392 20 1 8.3309 -4.4935 4.3469 21 6 8.8694 -6.2878 3.3062 22 7 8.7340 -6.9882 2.2002 23 14 9.9353 -6.9350 4.6970 24 1 10.5122 -8.2473 4.3090 25 1 11.0326 -5.9722 4.9688 26 1 9.1078 -7.1005 5.9190 27 6 2.2446 -1.1600 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 1.8025 2.1232 0.0009 32 1 6.8209 -0.1418 1.2395 33 1 5.0787 -0.0081 1.5601 34 1 6.5501 -0.1653 3.6204 35 1 5.2429 -1.3630 3.5275 36 1 8.1782 -1.8496 2.8219 37 1 7.3188 -2.4645 4.2598 38 1 6.6838 -4.2862 -0.7861 39 1 5.2916 -4.4742 0.3317 40 1 8.1315 -5.4816 0.6234 41 1 6.6201 -6.1767 1.2720 42 1 9.1873 -7.8408 2.1073 43 1 1.8020 -2.1451 -0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049462072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:23 Heat of formation + Delta-G solvation = 37.040036 kcal Electronic energy + Delta-G solvation = -25382.910120 eV Core-core repulsion = 21941.778963 eV Total energy + Delta-G solvation = -3441.131157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36109 -38.57130 -37.41587 -35.44619 -32.62944 -32.30880 -31.06556 -28.96532 -28.30583 -27.88873 -25.43459 -24.48377 -23.41797 -21.54068 -20.94696 -19.82198 -19.33454 -19.06655 -17.59928 -16.56314 -16.08536 -15.66078 -15.22003 -14.99617 -14.63547 -14.34576 -14.04154 -13.95331 -13.53166 -13.43781 -13.28427 -12.91403 -12.49574 -12.35289 -12.27373 -12.19021 -12.07684 -11.83554 -11.56695 -11.28265 -10.96263 -10.82551 -10.64837 -10.51877 -10.47353 -10.10994 -10.01901 -9.84834 -9.59955 -9.22447 -8.93148 -8.58117 -8.43094 -8.25299 -6.81926 -5.68357 -3.02828 0.49385 1.27453 1.74124 2.30725 2.97604 3.28030 3.41756 3.45962 3.47538 4.46313 4.51281 4.76179 4.82369 4.95626 5.07945 5.12492 5.26501 5.36106 5.36493 5.37660 5.43955 5.56977 5.63629 5.67524 5.76822 5.78279 5.85145 6.00084 6.07785 6.14976 6.24244 6.25587 6.29238 6.39375 6.55465 6.71519 6.77932 6.89231 7.16176 7.57783 7.61888 7.68777 7.85213 8.26169 8.32380 9.20791 9.84663 10.52928 11.43633 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026420 B = 0.003388 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.534436 B = 8262.935392 C = 8692.879309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.111 4.111 3 C -0.256 4.256 4 S 0.208 5.792 5 C -0.246 4.246 6 C 0.588 3.412 7 O -0.517 6.517 8 N -0.592 5.592 9 C 0.099 3.901 10 C -0.127 4.127 11 C -0.116 4.116 12 C 0.160 3.840 13 H 0.019 0.981 14 C 0.117 3.883 15 H 0.083 0.917 16 C -0.129 4.129 17 C 0.173 3.827 18 N -0.592 5.592 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.286 1.286 27 C -0.069 4.069 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.039 0.961 42 H 0.253 0.747 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 19.154 -3.355 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.393 4.393 4 S 0.476 5.524 5 C -0.366 4.366 6 C 0.374 3.626 7 O -0.395 6.395 8 N -0.324 5.324 9 C -0.025 4.025 10 C -0.166 4.166 11 C -0.155 4.155 12 C 0.051 3.949 13 H 0.036 0.964 14 C 0.013 3.987 15 H 0.101 0.899 16 C -0.168 4.168 17 C 0.048 3.952 18 N -0.317 5.317 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.102 4.102 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.182 0.818 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.918 19.333 -3.710 22.511 hybrid contribution -0.788 -1.072 0.781 1.543 sum -11.706 18.261 -2.929 21.887 Atomic orbital electron populations 1.20514 0.89593 1.02794 1.02372 1.18742 0.97791 0.91515 1.04354 1.25207 0.99461 1.03127 1.11548 1.83115 1.03421 0.98069 1.67767 1.24727 0.98193 0.97421 1.16241 1.16959 0.80428 0.84944 0.80285 1.90855 1.76974 1.31173 1.40463 1.47918 1.22910 1.19250 1.42361 1.22070 1.01800 0.86785 0.91852 1.21878 1.00503 0.99460 0.94757 1.21493 0.97885 0.94583 1.01501 1.20857 0.94987 0.87415 0.91654 0.96355 1.22543 0.89556 0.87332 0.99277 0.89893 1.22950 1.01730 0.93256 0.98848 1.21747 0.97282 0.92272 0.83878 1.44077 1.55133 1.16915 1.15593 1.18940 1.20734 1.01853 0.94043 0.90392 1.24803 1.00618 0.97340 0.97550 1.69932 1.46727 1.14544 1.25484 0.86227 0.80277 0.78078 0.81318 1.21621 1.21184 1.21222 1.20568 0.90856 0.99899 0.98828 0.91171 0.91620 0.91291 0.81768 0.91072 0.90065 0.90720 0.91750 0.91638 0.91363 0.91858 0.90417 0.92435 0.94244 0.93655 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.13 36.01 0.36 -0.32 16 2 C -0.11 -1.10 5.78 -106.45 -0.62 -1.72 16 3 C -0.26 -2.29 10.67 29.18 0.31 -1.98 16 4 S 0.21 2.05 19.80 -107.50 -2.13 -0.07 16 5 C -0.25 -3.33 5.63 -36.79 -0.21 -3.54 16 6 C 0.59 9.99 7.49 -12.90 -0.10 9.89 16 7 O -0.52 -10.49 14.04 5.18 0.07 -10.41 16 8 N -0.59 -9.66 2.91 -165.36 -0.48 -10.14 16 9 C 0.10 1.24 5.89 -3.44 -0.02 1.22 16 10 C -0.13 -1.64 5.93 -26.42 -0.16 -1.80 16 11 C -0.12 -1.98 5.45 -27.11 -0.15 -2.13 16 12 C 0.16 3.36 2.61 -68.06 -0.18 3.18 16 13 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 14 C 0.12 2.25 3.33 -66.63 -0.22 2.03 16 15 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 16 C -0.13 -2.79 4.94 -25.19 -0.12 -2.91 16 17 C 0.17 4.39 5.47 -1.69 -0.01 4.38 16 18 N -0.59 -15.22 3.35 -162.93 -0.55 -15.77 16 19 C -0.23 -6.28 9.94 -15.06 -0.15 -6.43 16 20 H 0.08 2.05 7.31 -52.49 -0.38 1.67 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -27.29 10.46 55.49 0.58 -26.71 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C -0.07 -0.85 10.01 -40.44 -0.40 -1.26 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.88 4.05 -30.05 -0.12 0.76 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 37 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.75 6.35 -51.92 -0.33 1.42 16 40 H 0.06 1.59 7.19 -51.93 -0.37 1.21 16 41 H 0.04 1.10 7.81 -51.93 -0.41 0.69 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -32.21 346.28 -10.27 -42.48 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.21 Total: -0.02 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.75 Total: -1.65 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.45 Total: -52.61 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.13 Total: -0.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.21 -10.27 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049462072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.518 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds