Wall clock time and date at job start Tue Mar 31 2020 12:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33818 * 124.52091 * 2 1 4 4 C 1.37473 * 115.09842 * 179.78565 * 3 2 1 5 5 C 1.50699 * 123.35043 * 180.19450 * 4 3 2 6 6 C 1.36651 * 113.29739 * 0.49841 * 4 3 2 7 7 C 1.46576 * 125.45579 * 179.71600 * 6 4 3 8 8 O 1.21702 * 120.00377 * 359.97438 * 7 6 4 9 9 N 1.34788 * 119.99928 * 179.97438 * 7 6 4 10 10 C 1.47390 * 135.84732 * 359.63382 * 9 7 6 11 11 C 1.52075 * 87.40880 * 154.38389 * 10 9 7 12 12 C 1.47386 * 135.85581 * 179.97438 * 9 7 6 13 13 C 1.53505 * 117.21447 * 267.27884 * 11 10 9 14 14 C 1.54630 * 102.70166 * 262.92931 * 13 11 10 15 15 N 1.47150 * 107.37508 * 339.38520 * 14 13 11 16 16 C 1.36937 * 125.57674 * 179.06839 * 15 14 13 17 17 H 1.08000 * 120.00235 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00410 * 0.02562 * 16 15 14 19 19 N 1.31620 * 119.99758 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00329 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46840 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47276 * 119.99922 * 20 18 16 23 23 H 1.48502 * 109.47240 * 240.00175 * 20 18 16 24 24 C 1.47745 * 108.84065 * 359.08579 * 15 14 13 25 25 S 1.70610 * 124.52179 * 180.30556 * 2 1 3 26 26 H 1.09002 * 109.47152 * 179.72045 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.72146 * 1 2 3 28 28 H 1.09004 * 109.47113 * 299.72126 * 1 2 3 29 29 H 1.08001 * 122.45196 * 0.02562 * 3 2 1 30 30 H 1.09004 * 109.47266 * 270.33267 * 5 4 3 31 31 H 1.08999 * 109.47298 * 30.32771 * 5 4 3 32 32 H 1.09002 * 109.46988 * 150.33258 * 5 4 3 33 33 H 1.08998 * 113.54114 * 268.99276 * 10 9 7 34 34 H 1.08995 * 113.54428 * 39.67635 * 10 9 7 35 35 H 1.09002 * 113.54100 * 320.32849 * 12 9 7 36 36 H 1.09000 * 113.54301 * 90.93174 * 12 9 7 37 37 H 1.08998 * 110.76658 * 21.22830 * 13 11 10 38 38 H 1.08998 * 110.76509 * 144.62456 * 13 11 10 39 39 H 1.09007 * 109.86858 * 98.83298 * 14 13 11 40 40 H 1.09006 * 109.86581 * 219.93349 * 14 13 11 41 41 H 0.97003 * 119.99630 * 179.97438 * 19 18 16 42 42 H 1.09004 * 110.40749 * 263.50660 * 24 15 14 43 43 H 1.09002 * 110.40920 * 141.08091 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6216 0.8775 0.0047 5 6 4.6449 1.9837 0.0097 6 6 3.9493 -0.4491 -0.0024 7 6 5.3123 -0.9882 -0.0057 8 8 6.2659 -0.2320 -0.0025 9 7 5.5097 -2.3215 -0.0123 10 6 4.6489 -3.5180 -0.0111 11 6 5.7966 -4.2596 -0.6786 12 6 6.6800 -3.2174 -0.0176 13 6 5.8038 -4.3069 -2.2129 14 6 5.1649 -5.6825 -2.5137 15 7 5.3022 -6.5053 -1.3014 16 6 4.8459 -7.7878 -1.1531 17 1 4.9958 -8.3098 -0.2196 18 6 4.1906 -8.4172 -2.2026 19 7 4.0083 -7.7813 -3.3405 20 14 3.5675 -10.1665 -2.0000 21 1 3.8965 -10.6543 -0.6365 22 1 2.0955 -10.1932 -2.1941 23 1 4.2158 -11.0428 -3.0085 24 6 6.0125 -5.7209 -0.2704 25 16 2.4739 -1.4057 -0.0075 26 1 -0.3633 -1.0277 -0.0050 27 1 -0.3633 0.5182 -0.8875 28 1 -0.3633 0.5095 0.8925 29 1 1.8429 2.0965 0.0004 30 1 4.8911 2.2558 -1.0167 31 1 4.2387 2.8522 0.5282 32 1 5.5453 1.6434 0.5213 33 1 4.4158 -3.8856 0.9882 34 1 3.7661 -3.4198 -0.6427 35 1 7.4926 -2.8683 -0.6546 36 1 7.0167 -3.4998 0.9799 37 1 5.1984 -3.5008 -2.6273 38 1 6.8232 -4.2622 -2.5962 39 1 4.1101 -5.5557 -2.7577 40 1 5.6846 -6.1585 -3.3453 41 1 3.5507 -8.2212 -4.0740 42 1 7.0753 -5.9633 -0.2735 43 1 5.5821 -5.9082 0.7134 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072780972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:37 Heat of formation + Delta-G solvation = 60.012147 kcal Electronic energy + Delta-G solvation = -24732.427947 eV Core-core repulsion = 21292.292936 eV Total energy + Delta-G solvation = -3440.135011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.70069 -39.05180 -37.57000 -35.66984 -32.80342 -32.24971 -30.01227 -28.97416 -28.30327 -27.33323 -26.07021 -25.45169 -23.68706 -22.13432 -20.78561 -20.27613 -18.66838 -18.07878 -17.73545 -16.74352 -15.97666 -15.73111 -15.63377 -14.86330 -14.53783 -14.46747 -14.19311 -13.83737 -13.66585 -13.27552 -13.17060 -13.09424 -12.81037 -12.44315 -12.31271 -12.04640 -11.91807 -11.87629 -11.76784 -11.69999 -11.11179 -10.94070 -10.89574 -10.58416 -10.43668 -10.20653 -10.09244 -9.86267 -9.70072 -9.58551 -8.81171 -8.62865 -8.58252 -8.39083 -6.86738 -5.73969 -3.07777 0.45930 1.43796 1.85757 2.27898 2.85014 3.24627 3.37989 3.43814 3.46121 4.39290 4.49461 4.55558 4.64637 4.93544 4.96838 5.10055 5.20898 5.24589 5.25121 5.41089 5.47080 5.51886 5.62207 5.62591 5.63803 5.67287 5.76751 5.79011 5.85402 5.89075 5.98675 6.12772 6.20657 6.30905 6.41114 6.44432 6.49989 6.63268 6.67636 7.53328 7.59000 7.77938 7.80234 8.18873 8.21948 9.18719 9.78761 10.44188 11.37608 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.003544 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.178829 B = 7899.677691 C = 9041.874400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.205 4.205 3 C -0.159 4.159 4 C -0.021 4.021 5 C -0.103 4.103 6 C -0.272 4.272 7 C 0.618 3.382 8 O -0.537 6.537 9 N -0.642 5.642 10 C 0.113 3.887 11 C -0.102 4.102 12 C 0.123 3.877 13 C -0.118 4.118 14 C 0.180 3.820 15 N -0.605 5.605 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.154 3.846 25 S 0.220 5.780 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.252 0.748 42 H 0.028 0.972 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 16.397 7.288 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.324 4.324 3 C -0.190 4.190 4 C -0.036 4.036 5 C -0.162 4.162 6 C -0.392 4.392 7 C 0.409 3.591 8 O -0.418 6.418 9 N -0.376 5.376 10 C -0.010 4.010 11 C -0.104 4.104 12 C 0.001 3.999 13 C -0.156 4.156 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.027 3.973 25 S 0.490 5.510 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.158 0.842 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.792 15.278 7.151 17.290 hybrid contribution -0.287 0.634 0.020 0.696 sum -4.079 15.912 7.171 17.924 Atomic orbital electron populations 1.20378 0.87547 1.03246 1.03127 1.24433 1.01723 0.98929 1.07359 1.19747 0.92084 0.99506 1.07654 1.19425 0.94698 0.93271 0.96247 1.20707 0.97951 0.94589 1.02909 1.24272 0.96874 0.97342 1.20741 1.16358 0.86745 0.79883 0.76143 1.90750 1.42266 1.56555 1.52191 1.49673 1.12288 1.03082 1.72575 1.23013 0.95676 0.81252 1.01045 1.22169 0.94842 0.95677 0.97712 1.22772 0.90453 0.85870 1.00806 1.22483 1.01142 1.00551 0.91437 1.21230 0.98765 0.85152 0.89358 1.44549 1.66459 1.12185 1.09939 1.19091 1.30048 0.87776 0.98694 0.90320 1.24793 1.00998 0.98512 0.96063 1.69973 1.47143 1.36166 1.03563 0.86062 0.78270 0.84223 0.77298 1.20503 1.21788 1.21793 1.21140 0.95963 0.86918 0.93286 1.83505 0.93643 1.06191 1.67673 0.91157 0.90354 0.90407 0.84220 0.90833 0.91903 0.88999 0.89105 0.90022 0.90183 0.89571 0.92101 0.91646 0.93478 0.93727 0.93800 0.95415 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.33 36.01 0.37 -0.29 16 2 C -0.20 -2.22 6.28 -35.86 -0.23 -2.45 16 3 C -0.16 -1.76 9.82 -41.41 -0.41 -2.17 16 4 C -0.02 -0.28 5.90 -105.47 -0.62 -0.90 16 5 C -0.10 -1.21 9.55 36.01 0.34 -0.86 16 6 C -0.27 -3.96 6.45 -36.79 -0.24 -4.19 16 7 C 0.62 10.19 8.03 -12.89 -0.10 10.08 16 8 O -0.54 -9.95 15.01 5.19 0.08 -9.88 16 9 N -0.64 -9.88 3.70 -187.33 -0.69 -10.57 16 10 C 0.11 1.69 6.56 -7.33 -0.05 1.65 16 11 C -0.10 -1.66 1.06 -155.23 -0.16 -1.82 16 12 C 0.12 1.77 8.02 -7.48 -0.06 1.71 16 13 C -0.12 -2.13 6.40 -25.61 -0.16 -2.30 16 14 C 0.18 4.16 5.39 -2.83 -0.02 4.15 16 15 N -0.60 -14.56 3.41 -170.53 -0.58 -15.14 16 16 C -0.23 -6.07 10.28 -15.06 -0.15 -6.23 16 17 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -26.27 10.30 55.49 0.57 -25.70 16 20 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.15 2.89 6.70 -3.23 -0.02 2.87 16 25 S 0.22 2.75 19.82 -107.50 -2.13 0.61 16 26 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.26 6.01 -51.93 -0.31 0.95 16 33 H 0.09 1.24 8.06 -51.93 -0.42 0.82 16 34 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 35 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.21 7.39 -51.92 -0.38 0.83 16 40 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -31.11 358.27 -10.43 -41.54 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.44 Total: -1.68 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.60 Total: -1.05 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.70 Total: -51.41 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.13 Total: 0.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.11 -10.43 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072780972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.552 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds