Wall clock time and date at job start Tue Mar 31 2020 12:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.33814 * 124.52318 * 89.72544 * 3 2 1 5 5 C 1.37476 * 115.10006 * 179.85493 * 4 3 2 6 6 C 1.36643 * 113.29680 * 0.41814 * 5 4 3 7 7 C 1.46586 * 125.46034 * 179.80791 * 6 5 4 8 8 O 1.21704 * 119.99649 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00221 * 179.97438 * 7 6 5 10 10 C 1.47398 * 135.85450 * 359.62828 * 9 7 6 11 11 C 1.52073 * 87.40707 * 154.39315 * 10 9 7 12 12 C 1.47394 * 135.85089 * 180.02562 * 9 7 6 13 13 C 1.53512 * 117.21163 * 267.27479 * 11 10 9 14 14 C 1.54631 * 102.70578 * 262.93721 * 13 11 10 15 15 N 1.47141 * 107.37474 * 339.38303 * 14 13 11 16 16 C 1.36941 * 125.57700 * 179.06495 * 15 14 13 17 17 H 1.08004 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00044 * 0.02562 * 16 15 14 19 19 N 1.31614 * 120.00071 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99782 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46804 * 60.00732 * 20 18 16 22 22 H 1.48500 * 109.46718 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47432 * 300.00469 * 20 18 16 24 24 C 1.47752 * 108.84166 * 359.09018 * 15 14 13 25 25 S 1.70615 * 124.52177 * 270.02714 * 3 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 122.44950 * 0.02562 * 4 3 2 32 32 H 1.08002 * 123.34980 * 180.19650 * 5 4 3 33 33 H 1.08997 * 113.54016 * 269.00199 * 10 9 7 34 34 H 1.09001 * 113.54047 * 39.67934 * 10 9 7 35 35 H 1.08997 * 113.54289 * 320.31386 * 12 9 7 36 36 H 1.08993 * 113.54495 * 90.92884 * 12 9 7 37 37 H 1.09006 * 110.76568 * 21.24405 * 13 11 10 38 38 H 1.08998 * 110.76429 * 144.63194 * 13 11 10 39 39 H 1.09002 * 109.86222 * 98.83644 * 14 13 11 40 40 H 1.09003 * 109.86412 * 219.93221 * 14 13 11 41 41 H 0.97001 * 120.00438 * 179.97438 * 19 18 16 42 42 H 1.09001 * 110.40719 * 263.49864 * 24 15 14 43 43 H 1.09005 * 110.40517 * 141.07625 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1376 1.1025 5 6 2.7361 3.4149 0.8774 6 6 2.8451 3.7239 -0.4491 7 6 3.2994 5.0090 -0.9884 8 8 3.6169 5.9082 -0.2322 9 7 3.3654 5.1949 -2.3216 10 6 3.0852 4.3810 -3.5181 11 6 2.8425 5.6844 -4.2631 12 6 3.7560 6.2982 -3.2175 13 6 1.3987 6.2030 -4.3184 14 6 0.9087 5.6986 -5.6956 15 7 2.1012 5.4222 -6.5120 16 6 2.0950 4.9403 -7.7938 17 1 3.0277 4.7693 -8.3110 18 6 0.8901 4.6715 -8.4285 19 7 -0.2464 4.8803 -7.7984 20 14 0.8817 4.0148 -10.1772 21 1 1.6080 2.7202 -10.2232 22 1 -0.5202 3.8125 -10.6232 23 1 1.5507 4.9899 -11.0755 24 6 3.3064 5.7492 -5.7223 25 16 2.3539 2.3327 -1.4057 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.1352 1.7408 2.0964 32 1 2.9802 4.1065 1.6702 33 1 3.9512 3.8272 -3.8805 34 1 2.1947 3.7596 -3.4232 35 1 3.4256 7.2776 -2.8717 36 1 4.8099 6.2815 -3.4949 37 1 0.8021 5.7719 -3.5143 38 1 1.3773 7.2919 -4.2758 39 1 0.3261 4.7859 -5.5699 40 1 0.3005 6.4651 -6.1758 41 1 -1.0885 4.6928 -8.2420 42 1 3.6592 6.7517 -5.9648 43 1 4.0911 5.0148 -5.9046 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072899866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:46 Heat of formation + Delta-G solvation = 59.080535 kcal Electronic energy + Delta-G solvation = -24542.268756 eV Core-core repulsion = 21102.093347 eV Total energy + Delta-G solvation = -3440.175409 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69845 -38.79502 -37.62808 -35.67910 -33.92194 -32.25591 -30.08682 -29.06119 -28.31094 -26.13941 -26.05495 -24.88705 -23.63613 -22.50010 -20.86852 -20.28692 -18.86912 -18.27558 -17.72673 -16.74855 -16.20100 -15.92290 -15.60992 -15.01737 -14.69896 -14.44665 -14.29730 -14.01481 -13.77881 -13.64957 -13.08319 -12.92611 -12.53269 -12.40922 -12.31540 -12.05170 -12.01676 -11.85953 -11.72270 -11.35342 -11.14304 -10.94444 -10.88791 -10.58004 -10.47390 -10.24720 -10.15852 -9.90278 -9.74826 -9.64106 -8.87457 -8.67319 -8.62296 -8.52104 -6.87111 -5.73852 -3.07808 0.43574 1.39629 1.84193 2.29631 2.82338 3.24738 3.38770 3.43461 3.44543 4.36606 4.44318 4.49605 4.62847 4.76537 4.92806 4.99494 5.12461 5.20112 5.27995 5.42575 5.45595 5.48235 5.56179 5.61084 5.63185 5.64104 5.70918 5.77866 5.80447 5.92306 5.93737 6.07526 6.15636 6.20469 6.26439 6.43030 6.48866 6.62486 6.67120 7.52433 7.58571 7.74580 7.79505 8.15030 8.21911 9.18615 9.78670 10.44125 11.37620 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.003682 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.207144 B = 7602.159713 C = 9073.346397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.205 4.205 4 C -0.156 4.156 5 C -0.057 4.057 6 C -0.262 4.262 7 C 0.616 3.384 8 O -0.541 6.541 9 N -0.641 5.641 10 C 0.113 3.887 11 C -0.102 4.102 12 C 0.123 3.877 13 C -0.118 4.118 14 C 0.180 3.820 15 N -0.604 5.604 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.154 3.846 25 S 0.226 5.774 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.253 0.747 42 H 0.028 0.972 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 -7.318 15.538 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.324 4.324 4 C -0.187 4.187 5 C -0.091 4.091 6 C -0.383 4.383 7 C 0.406 3.594 8 O -0.421 6.421 9 N -0.376 5.376 10 C -0.010 4.010 11 C -0.104 4.104 12 C 0.001 3.999 13 C -0.156 4.156 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.027 3.973 25 S 0.495 5.505 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.375 -7.243 14.440 16.737 hybrid contribution 0.021 -0.159 0.730 0.747 sum 4.396 -7.402 15.170 17.442 Atomic orbital electron populations 1.21810 0.93993 1.02184 1.02761 1.20145 0.96453 0.89445 1.03391 1.24523 1.06832 1.02210 0.98876 1.19885 1.05234 0.94153 0.99432 1.20684 0.97091 0.96268 0.95020 1.24518 1.16433 0.99360 0.97977 1.16401 0.77438 0.85573 0.79956 1.90806 1.51163 1.43153 1.56943 1.49671 1.65783 1.19012 1.03085 1.23030 1.01217 0.95601 0.81149 1.22178 0.97722 0.94846 0.95664 1.22794 0.99342 0.92013 0.85797 1.22490 0.92536 1.00044 1.00564 1.21226 0.88865 0.99198 0.85187 1.44530 0.99692 1.76624 1.12259 1.19001 0.92850 1.36065 0.87899 0.90424 1.24784 0.95315 1.01647 0.98490 1.69945 0.96574 1.53973 1.36401 0.86217 0.76590 0.78787 0.84252 1.21163 1.21627 1.21181 1.21141 0.91207 0.98094 0.86861 1.83516 1.58993 1.01706 1.06301 0.91876 0.92257 0.92108 0.90010 0.90566 0.84202 0.83224 0.89024 0.89979 0.90146 0.89495 0.92094 0.91629 0.93479 0.93729 0.93679 0.95407 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.06 -0.44 6.36 -27.88 -0.18 -0.62 16 3 C -0.20 -2.14 5.53 -35.86 -0.20 -2.34 16 4 C -0.16 -1.64 10.00 -41.41 -0.41 -2.05 16 5 C -0.06 -0.71 10.01 -40.44 -0.40 -1.12 16 6 C -0.26 -3.72 6.45 -36.79 -0.24 -3.96 16 7 C 0.62 10.22 8.03 -12.90 -0.10 10.11 16 8 O -0.54 -10.46 17.61 5.18 0.09 -10.36 16 9 N -0.64 -9.84 3.70 -187.28 -0.69 -10.54 16 10 C 0.11 1.67 6.56 -7.32 -0.05 1.63 16 11 C -0.10 -1.65 1.06 -155.21 -0.16 -1.82 16 12 C 0.12 1.76 8.03 -7.45 -0.06 1.70 16 13 C -0.12 -2.13 6.41 -25.61 -0.16 -2.29 16 14 C 0.18 4.15 5.39 -2.83 -0.02 4.14 16 15 N -0.60 -14.51 3.41 -170.53 -0.58 -15.09 16 16 C -0.23 -6.11 10.28 -15.06 -0.15 -6.27 16 17 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 18 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.20 10.30 55.49 0.57 -25.63 16 20 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.15 2.88 6.70 -3.22 -0.02 2.86 16 25 S 0.23 2.73 19.84 -107.50 -2.13 0.59 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 34 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 35 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.20 7.39 -51.93 -0.38 0.82 16 40 H 0.04 1.15 7.49 -51.93 -0.39 0.77 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -31.25 362.89 -10.75 -41.99 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.56 Total: -1.75 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.89 Total: -1.08 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.70 Total: -51.25 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.13 Total: 0.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.25 -10.75 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072899866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.072 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds