Wall clock time and date at job start Tue Mar 31 2020 12:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.33814 * 124.52318 * 89.72544 * 3 2 1 5 5 C 1.37476 * 115.10006 * 179.85493 * 4 3 2 6 6 C 1.36643 * 113.29680 * 0.41814 * 5 4 3 7 7 C 1.46586 * 125.46034 * 179.80791 * 6 5 4 8 8 O 1.21704 * 119.99649 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00221 * 179.97438 * 7 6 5 10 10 C 1.47398 * 135.85450 * 359.62828 * 9 7 6 11 11 C 1.52073 * 87.40707 * 154.39315 * 10 9 7 12 12 C 1.47394 * 135.85089 * 180.02562 * 9 7 6 13 13 C 1.53512 * 117.21163 * 267.27479 * 11 10 9 14 14 C 1.54631 * 102.70578 * 262.93721 * 13 11 10 15 15 N 1.47141 * 107.37474 * 339.38303 * 14 13 11 16 16 C 1.36941 * 125.57700 * 179.06495 * 15 14 13 17 17 H 1.08004 * 119.99880 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00044 * 0.02562 * 16 15 14 19 19 N 1.31614 * 120.00071 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99782 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46804 * 60.00732 * 20 18 16 22 22 H 1.48500 * 109.46718 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47432 * 300.00469 * 20 18 16 24 24 C 1.47752 * 108.84166 * 359.09018 * 15 14 13 25 25 S 1.70615 * 124.52177 * 270.02714 * 3 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 122.44950 * 0.02562 * 4 3 2 32 32 H 1.08002 * 123.34980 * 180.19650 * 5 4 3 33 33 H 1.08997 * 113.54016 * 269.00199 * 10 9 7 34 34 H 1.09001 * 113.54047 * 39.67934 * 10 9 7 35 35 H 1.08997 * 113.54289 * 320.31386 * 12 9 7 36 36 H 1.08993 * 113.54495 * 90.92884 * 12 9 7 37 37 H 1.09006 * 110.76568 * 21.24405 * 13 11 10 38 38 H 1.08998 * 110.76429 * 144.63194 * 13 11 10 39 39 H 1.09002 * 109.86222 * 98.83644 * 14 13 11 40 40 H 1.09003 * 109.86412 * 219.93221 * 14 13 11 41 41 H 0.97001 * 120.00438 * 179.97438 * 19 18 16 42 42 H 1.09001 * 110.40719 * 263.49864 * 24 15 14 43 43 H 1.09005 * 110.40517 * 141.07625 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2801 2.1376 1.1025 5 6 2.7361 3.4149 0.8774 6 6 2.8451 3.7239 -0.4491 7 6 3.2994 5.0090 -0.9884 8 8 3.6169 5.9082 -0.2322 9 7 3.3654 5.1949 -2.3216 10 6 3.0852 4.3810 -3.5181 11 6 2.8425 5.6844 -4.2631 12 6 3.7560 6.2982 -3.2175 13 6 1.3987 6.2030 -4.3184 14 6 0.9087 5.6986 -5.6956 15 7 2.1012 5.4222 -6.5120 16 6 2.0950 4.9403 -7.7938 17 1 3.0277 4.7693 -8.3110 18 6 0.8901 4.6715 -8.4285 19 7 -0.2464 4.8803 -7.7984 20 14 0.8817 4.0148 -10.1772 21 1 1.6080 2.7202 -10.2232 22 1 -0.5202 3.8125 -10.6232 23 1 1.5507 4.9899 -11.0755 24 6 3.3064 5.7492 -5.7223 25 16 2.3539 2.3327 -1.4057 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.1352 1.7408 2.0964 32 1 2.9802 4.1065 1.6702 33 1 3.9512 3.8272 -3.8805 34 1 2.1947 3.7596 -3.4232 35 1 3.4256 7.2776 -2.8717 36 1 4.8099 6.2815 -3.4949 37 1 0.8021 5.7719 -3.5143 38 1 1.3773 7.2919 -4.2758 39 1 0.3261 4.7859 -5.5699 40 1 0.3005 6.4651 -6.1758 41 1 -1.0885 4.6928 -8.2420 42 1 3.6592 6.7517 -5.9648 43 1 4.0911 5.0148 -5.9046 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072899866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:45 Heat of formation + Delta-G solvation = 41.716466 kcal Electronic energy + Delta-G solvation = -24543.021719 eV Core-core repulsion = 21102.093347 eV Total energy + Delta-G solvation = -3440.928371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.99157 -39.95144 -38.69811 -37.30554 -34.68098 -34.09157 -31.54426 -30.61966 -29.45937 -27.53872 -27.28295 -26.13047 -25.13446 -23.25058 -22.17731 -21.87782 -20.08964 -19.49007 -18.82879 -18.56913 -17.32045 -16.96779 -16.86569 -16.70332 -16.13852 -15.64612 -15.51628 -15.21371 -14.94801 -14.65694 -14.23841 -14.09291 -13.87861 -13.71547 -13.64976 -13.37819 -13.29566 -12.89100 -12.85398 -12.71541 -12.44745 -12.34493 -12.08039 -12.05720 -11.91381 -11.84857 -11.72068 -11.63371 -11.20048 -11.07416 -10.64212 -9.98908 -9.58588 -9.57519 -8.83889 -7.79145 -5.14107 -0.52794 0.45981 0.93632 1.35347 1.50945 1.53260 1.59330 1.65077 2.10907 2.54289 3.17303 3.36238 3.46067 3.56328 3.71768 3.79229 4.01632 4.12821 4.18966 4.31661 4.35467 4.39106 4.44961 4.47095 4.57132 4.62172 4.66708 4.78400 4.82094 4.88721 4.92571 5.00186 5.02737 5.13989 5.15074 5.18678 5.21377 5.33102 5.42714 5.52282 5.68303 5.80892 6.23924 6.52587 6.92544 7.15318 7.82771 8.47142 9.31182 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.003682 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.207144 B = 7602.159713 C = 9073.346397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.191 4.191 4 C -0.160 4.160 5 C -0.051 4.051 6 C -0.298 4.298 7 C 0.613 3.387 8 O -0.579 6.579 9 N -0.642 5.642 10 C 0.118 3.882 11 C -0.096 4.096 12 C 0.129 3.871 13 C -0.104 4.104 14 C 0.191 3.809 15 N -0.625 5.625 16 C -0.237 4.237 17 H 0.087 0.913 18 C -0.065 4.065 19 N -0.953 5.953 20 Si 0.974 3.026 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.279 1.279 24 C 0.153 3.847 25 S 0.216 5.784 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.152 0.848 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.013 0.987 40 H 0.005 0.995 41 H 0.245 0.755 42 H 0.038 0.962 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -8.803 16.514 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.311 4.311 4 C -0.189 4.189 5 C -0.086 4.086 6 C -0.417 4.417 7 C 0.405 3.595 8 O -0.461 6.461 9 N -0.375 5.375 10 C -0.005 4.005 11 C -0.098 4.098 12 C 0.007 3.993 13 C -0.142 4.142 14 C 0.066 3.934 15 N -0.351 5.351 16 C -0.366 4.366 17 H 0.105 0.895 18 C -0.257 4.257 19 N -0.602 5.602 20 Si 0.803 3.197 21 H -0.201 1.201 22 H -0.225 1.225 23 H -0.205 1.205 24 C 0.027 3.973 25 S 0.486 5.514 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.186 0.814 32 H 0.170 0.830 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.031 0.969 40 H 0.024 0.976 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.798 -8.727 15.407 18.632 hybrid contribution -0.413 0.258 0.467 0.674 sum 5.386 -8.468 15.874 18.780 Atomic orbital electron populations 1.21814 0.93732 1.03110 1.02066 1.20297 0.96537 0.87895 1.04809 1.24891 1.05240 1.03080 0.97881 1.20121 1.04764 0.93242 1.00796 1.20937 0.95957 0.97131 0.94540 1.24417 1.19032 0.99349 0.98952 1.16717 0.76875 0.86020 0.79899 1.90771 1.53095 1.44589 1.57690 1.49659 1.65464 1.19358 1.03026 1.23066 1.01907 0.94975 0.80513 1.21989 0.96545 0.96451 0.94827 1.22854 1.00258 0.91802 0.84375 1.22283 0.93933 1.00624 0.97391 1.20897 0.88475 0.96510 0.87487 1.44805 1.01700 1.76424 1.12198 1.19439 0.93133 1.34909 0.89137 0.89491 1.25581 0.95169 1.02787 1.02204 1.70172 0.96776 1.55561 1.37668 0.85216 0.75996 0.78517 0.79981 1.20100 1.22543 1.20532 1.21303 0.89727 0.98801 0.87429 1.83489 1.59276 1.01409 1.07274 0.90201 0.92126 0.93650 0.87727 0.90006 0.81364 0.83016 0.87022 0.90561 0.89944 0.86818 0.91578 0.90563 0.96874 0.97625 0.94593 0.94418 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.89 71.98 0.71 -1.25 16 2 C -0.06 -0.74 6.36 29.85 0.19 -0.55 16 3 C -0.19 -3.57 5.53 24.68 0.14 -3.43 16 4 C -0.16 -2.96 10.00 21.08 0.21 -2.75 16 5 C -0.05 -1.22 10.01 21.72 0.22 -1.00 16 6 C -0.30 -8.22 6.45 24.08 0.16 -8.07 16 7 C 0.61 20.00 8.03 86.42 0.69 20.70 16 8 O -0.58 -22.31 17.61 -4.36 -0.08 -22.39 16 9 N -0.64 -18.88 3.70 -864.65 -3.20 -22.08 16 10 C 0.12 3.32 6.56 83.77 0.55 3.87 16 11 C -0.10 -2.98 1.06 -52.62 -0.06 -3.04 16 12 C 0.13 3.42 8.03 83.68 0.67 4.09 16 13 C -0.10 -3.74 6.41 31.32 0.20 -3.54 16 14 C 0.19 9.13 5.39 86.81 0.47 9.60 16 15 N -0.62 -30.08 3.41 -693.45 -2.36 -32.44 16 16 C -0.24 -12.62 10.28 84.03 0.86 -11.75 16 17 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16 18 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 19 N -0.95 -56.07 10.30 21.65 0.22 -55.85 16 20 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 C 0.15 5.48 6.70 86.23 0.58 6.06 16 25 S 0.22 5.00 19.84 -56.49 -1.12 3.88 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.11 2.73 8.06 -2.39 -0.02 2.71 16 34 H 0.08 2.27 6.43 -2.39 -0.02 2.26 16 35 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 36 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 2.30 8.07 -2.38 -0.02 2.28 16 38 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.01 0.70 7.39 -2.39 -0.02 0.68 16 40 H 0.01 0.30 7.49 -2.39 -0.02 0.28 16 41 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.96 8.00 -2.38 -0.02 1.94 16 Total: -1.00 -69.18 362.89 2.55 -66.63 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.00 Total: 9.99 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.06 Total: 5.85 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -5.34 Total: -110.37 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.08 Total: -22.39 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.12 Total: 3.88 kcal Total: -69.18 2.55 -66.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072899866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.350 kcal (2) G-P(sol) polarization free energy of solvation -69.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds