Wall clock time and date at job start Tue Mar 31 2020 12:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.37468 * 123.34868 * 264.97314 * 3 2 1 5 5 C 1.33820 * 115.10269 * 180.02562 * 4 3 2 6 6 S 1.70616 * 110.95211 * 359.76681 * 5 4 3 7 7 C 1.36642 * 123.35351 * 85.00193 * 3 2 1 8 8 C 1.46584 * 125.45844 * 359.93912 * 7 3 2 9 9 O 1.21702 * 120.00117 * 0.02562 * 8 7 3 10 10 N 1.34772 * 120.00179 * 179.97438 * 8 7 3 11 11 C 1.47893 * 134.34560 * 179.97438 * 10 8 7 12 12 C 1.52373 * 85.73183 * 156.54250 * 11 10 8 13 13 C 1.48166 * 134.45037 * 359.88057 * 10 8 7 14 14 C 1.53655 * 116.39587 * 141.29013 * 12 11 10 15 15 C 1.54593 * 102.73395 * 162.91473 * 14 12 11 16 16 N 1.47139 * 107.36754 * 339.24537 * 15 14 12 17 17 C 1.36940 * 125.58797 * 179.07556 * 16 15 14 18 18 H 1.07999 * 119.99574 * 174.80960 * 17 16 15 19 19 C 1.38804 * 120.00258 * 354.81372 * 17 16 15 20 20 N 1.31623 * 119.99874 * 7.06035 * 19 17 16 21 21 Si 1.86802 * 120.00140 * 187.06039 * 19 17 16 22 22 H 1.48503 * 109.46827 * 94.98705 * 21 19 17 23 23 H 1.48501 * 109.47017 * 214.98412 * 21 19 17 24 24 H 1.48500 * 109.46794 * 334.98578 * 21 19 17 25 25 C 1.47729 * 108.82164 * 359.07426 * 16 15 14 26 26 H 1.08995 * 109.46919 * 60.00121 * 1 2 3 27 27 H 1.09002 * 109.46869 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47407 * 300.00145 * 1 2 3 29 29 H 1.09003 * 109.47407 * 239.99855 * 2 1 3 30 30 H 1.09000 * 109.47051 * 119.99437 * 2 1 3 31 31 H 1.07999 * 122.45193 * 0.02562 * 4 3 2 32 32 H 1.07999 * 124.52664 * 179.97438 * 5 4 3 33 33 H 1.09003 * 113.84987 * 42.31536 * 11 10 8 34 34 H 1.08994 * 113.85525 * 270.77549 * 11 10 8 35 35 H 1.09000 * 113.73661 * 89.28167 * 13 10 8 36 36 H 1.09005 * 114.04241 * 317.67177 * 13 10 8 37 37 H 1.09003 * 110.75742 * 281.22672 * 14 12 11 38 38 H 1.08998 * 110.75793 * 44.60066 * 14 12 11 39 39 H 1.09001 * 109.87151 * 98.69121 * 15 14 12 40 40 H 1.09000 * 109.86844 * 219.79819 * 15 14 12 41 41 H 0.96998 * 120.00126 * 180.02562 * 20 19 17 42 42 H 1.08995 * 110.40016 * 263.65738 * 25 16 15 43 43 H 1.08999 * 110.39529 * 141.25183 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3790 2.0998 -1.1439 5 6 2.8051 3.3539 -0.9527 6 16 2.7871 3.7583 0.7048 7 6 2.1889 2.1623 1.1370 8 6 1.8989 1.7029 2.4985 9 8 1.4821 0.5747 2.6842 10 7 2.0948 2.5296 3.5447 11 6 1.9142 2.4065 5.0074 12 6 2.9454 3.5231 5.1140 13 6 2.5781 3.9226 3.6901 14 6 2.6999 4.5779 6.2040 15 6 4.0822 5.2570 6.3386 16 7 5.0838 4.3254 5.7966 17 6 6.4304 4.5611 5.7167 18 1 7.0961 3.7805 5.3792 19 6 6.9398 5.8032 6.0695 20 7 6.1520 6.7078 6.6112 21 14 8.7433 6.1908 5.7755 22 1 8.8931 6.8930 4.4755 23 1 9.2473 7.0604 6.8687 24 1 9.5231 4.9274 5.7484 25 6 4.3987 3.0941 5.3530 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 2.3125 1.6538 -2.1252 32 1 3.1155 4.0221 -1.7424 33 1 2.2525 1.4537 5.4146 34 1 0.9204 2.6896 5.3542 35 1 1.7867 4.6699 3.6322 36 1 3.4374 4.1622 3.0638 37 1 1.9459 5.2967 5.8831 38 1 2.4092 4.1042 7.1416 39 1 4.0951 6.1868 5.7698 40 1 4.2946 5.4598 7.3883 41 1 6.5078 7.5759 6.8574 42 1 4.4468 2.3314 6.1302 43 1 4.8426 2.7243 4.4287 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073452949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:27 Heat of formation + Delta-G solvation = 41.442004 kcal Electronic energy + Delta-G solvation = -24962.924752 eV Core-core repulsion = 21521.984479 eV Total energy + Delta-G solvation = -3440.940273 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83588 -40.18662 -38.59690 -37.17416 -34.13818 -33.66839 -31.76612 -30.71380 -29.41323 -27.62175 -27.42205 -26.22695 -25.09615 -23.29385 -22.18712 -21.65863 -19.88278 -19.22577 -19.03710 -18.69554 -17.16667 -16.90611 -16.76089 -16.59136 -16.12920 -15.61042 -15.42826 -15.20354 -14.96231 -14.52575 -14.22556 -14.10606 -13.91778 -13.70655 -13.66833 -13.28960 -13.23742 -12.88960 -12.84576 -12.79050 -12.55493 -12.33348 -12.06916 -11.99101 -11.94597 -11.70890 -11.68001 -11.57780 -11.22820 -10.79500 -10.64117 -9.98389 -9.62907 -9.40390 -8.86557 -7.84095 -5.17645 -0.46402 0.54315 0.99887 1.40517 1.47505 1.48102 1.57042 1.69873 2.14377 2.50184 3.22498 3.36536 3.45584 3.64961 3.71553 3.88767 4.08572 4.12757 4.17257 4.29395 4.42058 4.46800 4.48749 4.53100 4.59630 4.67754 4.73324 4.77255 4.81285 4.91677 4.94809 5.06219 5.07428 5.11352 5.12409 5.20782 5.31566 5.43995 5.48290 5.52889 5.73463 5.83174 6.22844 6.57419 7.02864 7.13765 7.79288 8.43633 9.26106 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.003735 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.145679 B = 7495.756676 C = 8404.921000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.024 4.024 4 C -0.155 4.155 5 C -0.226 4.226 6 S 0.208 5.792 7 C -0.300 4.300 8 C 0.604 3.396 9 O -0.564 6.564 10 N -0.643 5.643 11 C 0.134 3.866 12 C -0.094 4.094 13 C 0.119 3.881 14 C -0.112 4.112 15 C 0.183 3.817 16 N -0.624 5.624 17 C -0.243 4.243 18 H 0.075 0.925 19 C -0.057 4.057 20 N -0.944 5.944 21 Si 0.971 3.029 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.160 3.840 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.170 0.830 32 H 0.196 0.804 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.019 0.981 40 H 0.005 0.995 41 H 0.247 0.753 42 H 0.026 0.974 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.638 -6.649 -14.298 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 C -0.041 4.041 4 C -0.185 4.185 5 C -0.364 4.364 6 S 0.478 5.522 7 C -0.420 4.420 8 C 0.396 3.604 9 O -0.446 6.446 10 N -0.377 5.377 11 C 0.013 3.987 12 C -0.096 4.096 13 C -0.003 4.003 14 C -0.150 4.150 15 C 0.059 3.941 16 N -0.351 5.351 17 C -0.372 4.372 18 H 0.093 0.907 19 C -0.250 4.250 20 N -0.592 5.592 21 Si 0.799 3.201 22 H -0.213 1.213 23 H -0.221 1.221 24 H -0.198 1.198 25 C 0.035 3.965 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.187 0.813 32 H 0.213 0.787 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.037 0.963 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.338 -5.855 -13.502 19.205 hybrid contribution 1.041 -0.716 -0.645 1.419 sum -11.297 -6.571 -14.147 19.260 Atomic orbital electron populations 1.21537 0.93802 1.02209 1.01124 1.20406 0.96932 0.90390 1.03307 1.19814 0.95730 0.97701 0.90834 1.20112 1.04060 0.94357 0.99989 1.25839 1.06189 1.01785 1.02577 1.83536 1.59462 1.10166 0.99066 1.24383 1.19365 1.01374 0.96844 1.16829 0.76865 0.84002 0.82732 1.90738 1.48724 1.19841 1.85297 1.50172 1.65090 1.15079 1.07346 1.23068 0.99554 0.98661 0.77433 1.22239 0.95281 0.96808 0.95285 1.23268 0.99021 0.83220 0.94816 1.22536 0.97450 0.97122 0.97929 1.21021 0.85838 0.91582 0.95695 1.44832 1.03049 1.15037 1.72152 1.19351 0.83042 0.96879 1.37976 0.90749 1.25528 1.01892 0.96359 1.01261 1.70168 1.35416 1.06229 1.47429 0.85179 0.80133 0.77735 0.77020 1.21253 1.22088 1.19766 1.21118 0.90055 0.89048 0.96315 0.91715 0.91313 0.94805 0.88985 0.91484 0.81286 0.78680 0.90068 0.86434 0.86561 0.90591 0.88594 0.89825 0.96251 0.97669 0.94322 0.95629 0.95297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.78 71.98 0.70 -1.98 16 2 C -0.07 -1.62 5.50 29.85 0.16 -1.45 16 3 C -0.02 -0.60 5.16 -20.42 -0.11 -0.70 16 4 C -0.15 -2.93 9.96 21.08 0.21 -2.72 16 5 C -0.23 -4.14 10.92 66.82 0.73 -3.41 16 6 S 0.21 4.87 19.79 -56.49 -1.12 3.75 16 7 C -0.30 -8.45 6.44 24.08 0.16 -8.30 16 8 C 0.60 19.60 8.01 86.42 0.69 20.29 16 9 O -0.56 -20.70 14.44 -4.35 -0.06 -20.77 16 10 N -0.64 -18.99 3.63 -863.92 -3.14 -22.12 16 11 C 0.13 3.53 8.20 85.90 0.70 4.23 16 12 C -0.09 -2.91 0.99 -52.17 -0.05 -2.96 16 13 C 0.12 3.36 6.57 85.85 0.56 3.92 16 14 C -0.11 -3.51 6.36 31.36 0.20 -3.31 16 15 C 0.18 8.45 5.40 86.80 0.47 8.92 16 16 N -0.62 -31.08 3.41 -693.36 -2.36 -33.45 16 17 C -0.24 -13.50 10.26 84.03 0.86 -12.64 16 18 H 0.07 4.04 7.84 -2.91 -0.02 4.02 16 19 C -0.06 -3.17 5.48 84.86 0.46 -2.70 16 20 N -0.94 -55.08 10.35 21.65 0.22 -54.85 16 21 Si 0.97 45.16 29.56 68.60 2.03 47.19 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.16 6.43 6.63 86.28 0.57 7.00 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.03 0.86 7.60 -2.39 -0.02 0.85 16 29 H 0.09 1.58 8.12 -2.39 -0.02 1.56 16 30 H 0.07 1.91 6.33 -2.39 -0.02 1.90 16 31 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.08 2.20 8.12 -2.39 -0.02 2.18 16 34 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.12 2.67 8.04 -2.39 -0.02 2.65 16 36 H 0.08 2.38 6.52 -2.38 -0.02 2.37 16 37 H 0.10 2.47 7.99 -2.39 -0.02 2.45 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.02 0.99 7.30 -2.39 -0.02 0.97 16 40 H 0.01 0.27 7.60 -2.39 -0.02 0.25 16 41 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.03 1.21 8.07 -2.39 -0.02 1.19 16 Total: -1.00 -69.62 356.82 2.91 -66.71 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.00 Total: 9.36 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 6.33 Total: 4.18 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -5.28 Total: -110.42 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.06 Total: -20.77 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -1.12 Total: 3.75 kcal Total: -69.62 2.91 -66.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073452949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.151 kcal (2) G-P(sol) polarization free energy of solvation -69.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds